genome.fa.s23.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  226  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67056012--67056052	21	2.0	21	90	0	64	19	29	21	29	1.98
67062365--67062407	23	1.9	23	90	4	70	69	2	13	13	1.28
67063089--67063118	15	2.0	15	93	0	51	63	6	6	23	1.43
67077106--67077136	11	2.8	11	95	0	53	19	48	3	29	1.64
67077682--67077774	18	5.2	18	85	0	123	29	23	15	32	1.95
67077688--67077774	36	2.4	36	92	0	147	29	22	13	33	1.93
67081820--67081850	11	2.8	11	95	0	53	19	48	3	29	1.64
67104299--67104454	77	2.0	77	100	0	312	62	7	6	23	1.45
67105141--67105176	16	2.2	16	100	0	72	63	13	5	16	1.47
67112718--67112752	18	1.9	18	94	0	61	51	14	8	25	1.70
67115639--67115664	3	8.7	3	100	0	52	69	30	0	0	0.89
67121479--67121515	12	3.0	13	84	11	51	29	40	18	10	1.85
67124888--67124925	18	2.2	17	86	13	51	39	0	13	47	1.42
67126783--67126866	31	2.7	31	73	20	79	54	7	13	25	1.63
67136944--67137054	57	1.9	58	94	1	197	25	16	9	48	1.76
67147414--67147525	57	2.0	57	92	0	188	28	14	8	48	1.74
67153253--67153286	16	2.1	16	88	0	50	50	14	17	17	1.79
67156087--67156127	21	2.0	21	90	0	64	29	21	29	19	1.98
67158024--67158057	16	2.1	16	88	0	50	50	14	17	17	1.79
67161356--67161380	8	3.1	8	100	0	50	72	0	0	28	0.86
67163647--67163671	7	3.6	7	100	0	50	44	0	0	56	0.99
67171384--67171430	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67174500--67174529	2	15.0	2	100	0	60	0	50	0	50	1.00
67176866--67176973	36	3.0	36	91	0	189	27	11	25	35	1.90
67176669--67177190	285	1.8	285	89	1	823	30	13	26	29	1.94
67179114--67179139	13	2.0	13	100	0	52	7	23	0	69	1.14
67180963--67181020	30	1.9	31	86	10	84	32	0	3	63	1.11
67192839--67192881	20	2.2	20	87	4	61	18	11	13	55	1.68
67194833--67194869	18	2.2	18	85	9	51	56	2	0	40	1.13
67197711--67197829	30	3.8	30	75	14	100	47	2	12	37	1.55
67204914--67204991	31	2.6	30	76	15	79	47	0	1	51	1.09
67204940--67205001	30	2.0	31	82	14	76	50	0	0	50	1.00
67205120--67205152	15	2.2	15	94	0	57	57	0	0	42	0.98
67206052--67206114	32	2.0	31	84	3	81	36	3	11	49	1.54
67207323--67207364	11	3.7	11	84	6	57	57	0	2	40	1.12
67211228--67211264	14	2.6	14	95	0	65	56	10	8	24	1.60
67212133--67212173	19	2.2	19	86	4	57	58	9	12	19	1.61
67212269--67212303	16	2.2	16	100	0	70	40	11	17	31	1.85
67217868--67217914	22	2.1	23	84	7	62	57	2	0	40	1.11
67218891--67218918	7	4.0	7	100	0	56	14	0	0	85	0.59
67220077--67220108	16	1.9	17	93	6	57	25	21	0	53	1.46
67220773--67220807	17	2.1	17	94	0	61	2	14	5	77	1.07
67220835--67220875	21	1.9	22	85	5	57	56	2	0	41	1.13
67221002--67221066	30	2.3	27	84	7	76	44	3	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67221032--67221069	16	2.4	17	82	13	53	47	0	0	52	1.00
67226045--67226072	12	2.3	12	100	0	56	28	14	42	14	1.84
67227714--67227793	42	1.9	42	92	5	135	45	5	7	42	1.54
67228893--67228936	23	2.0	23	86	4	63	31	4	6	56	1.46
67241965--67242033	35	1.9	36	94	2	122	34	2	27	34	1.72
67253635--67253748	30	3.8	30	91	0	174	24	22	7	44	1.79
67253635--67253711	15	5.1	15	69	12	68	27	22	7	42	1.80
67258653--67258719	23	2.8	25	86	11	95	68	0	1	29	0.98
67258653--67258714	24	2.5	26	87	10	94	67	0	1	30	1.00
67260996--67261045	24	2.1	24	84	0	64	36	2	8	54	1.42
67265332--67265368	19	1.9	19	89	10	58	56	24	10	8	1.60
67266621--67266652	12	2.8	12	95	4	57	34	6	0	59	1.23
67273002--67273539	88	6.2	88	92	1	845	28	22	23	26	1.99
67273138--67273272	43	3.2	42	63	12	112	27	20	22	28	1.99
67273002--67273539	174	3.1	172	91	2	819	28	22	23	26	1.99
67273599--67273873	50	5.6	49	73	3	212	33	22	19	24	1.97
67273572--67273872	98	3.0	99	84	4	374	32	22	19	25	1.97
67273848--67273895	25	1.9	25	82	0	60	37	20	18	22	1.94
67273748--67273985	125	1.9	125	85	1	334	35	22	17	23	1.95
67274112--67274792	44	15.7	44	71	10	375	30	19	21	28	1.97
67274027--67274705	131	5.2	131	95	1	1107	30	18	22	28	1.97
67274157--67274788	85	7.2	86	72	11	333	30	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67274548--67274862	172	1.8	173	91	3	526	29	20	20	28	1.98
67274027--67274840	393	2.1	390	86	4	1111	30	18	22	28	1.97
67274027--67274840	262	3.1	259	87	5	1029	30	18	22	28	1.97
67274847--67274976	44	3.0	43	78	13	160	36	23	20	19	1.95
67274547--67274906	172	2.1	172	85	7	487	31	20	21	27	1.98
67274838--67274964	40	3.1	40	83	7	157	33	23	21	21	1.97
67276537--67276568	12	2.8	12	95	4	57	34	6	0	59	1.23
67289121--67289180	30	1.9	32	86	6	88	26	10	6	56	1.57
67293022--67293057	18	2.0	18	100	0	72	16	38	27	16	1.90
67295376--67295532	82	1.9	81	91	5	255	36	12	3	47	1.59
67304634--67305078	221	2.0	221	98	0	863	39	20	10	30	1.86
67318256--67318346	32	2.8	31	80	6	101	46	13	16	24	1.82
67334002--67334045	21	2.2	20	83	4	52	15	9	2	72	1.19
67341396--67341446	16	3.2	16	83	5	68	43	3	27	25	1.72
67341635--67341845	57	3.8	57	75	16	212	51	5	0	42	1.32
67341645--67341841	107	1.8	110	90	4	319	50	6	1	42	1.34
67345607--67345680	36	2.0	37	89	2	114	37	4	31	27	1.75
67346539--67346569	15	2.1	15	93	0	53	48	22	16	12	1.80
67347379--67347427	24	2.0	24	100	0	98	40	8	20	30	1.81
67348046--67348100	27	2.0	27	100	0	110	30	3	43	21	1.70
67348134--67348171	19	2.0	19	100	0	76	31	10	31	26	1.90
67350948--67350995	23	2.1	23	84	7	62	56	4	2	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67351332--67351473	23	6.2	23	78	5	144	56	4	5	33	1.44
67351332--67351470	47	3.0	46	82	3	161	56	5	5	33	1.45
67352141--67352221	39	2.1	37	86	11	110	61	0	0	38	0.96
67357493--67357535	15	2.8	16	82	10	54	46	9	0	44	1.35
67357974--67358011	18	2.1	18	90	0	58	34	0	5	60	1.19
67358094--67358168	21	3.5	21	70	20	66	68	0	1	30	0.98
67368404--67368451	22	2.2	21	82	10	53	45	0	2	52	1.12
67369555--67369640	35	2.5	35	81	7	86	24	8	27	39	1.83
67369629--67369669	21	2.0	21	85	0	55	14	12	34	39	1.84
67384717--67384751	16	2.2	16	89	0	52	51	17	8	22	1.72
67390692--67390734	21	2.1	21	86	4	61	39	6	4	48	1.51
67392756--67392939	87	2.1	87	88	0	269	38	14	20	26	1.91
67394003--67394078	31	2.5	30	81	10	84	32	7	15	43	1.76
67395434--67395619	87	2.1	87	88	2	266	36	15	23	24	1.94
67395787--67395874	34	2.6	34	82	8	99	42	17	10	30	1.82
67395816--67395916	35	2.9	34	80	5	105	47	16	8	26	1.76
67396683--67396758	31	2.5	30	81	10	84	34	7	15	42	1.76
67400923--67400953	16	1.9	16	93	0	53	54	19	3	22	1.58
67404037--67404070	10	3.4	10	91	0	59	32	41	5	20	1.76
67404036--67404070	5	7.0	5	90	0	52	34	40	5	20	1.76
67407721--67407750	6	5.0	6	91	0	51	36	63	0	0	0.95
67415329--67415385	28	2.0	28	100	0	114	28	10	12	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67415329--67415402	28	2.7	28	87	6	71	31	12	10	45	1.76
67416884--67416970	45	1.9	45	90	0	138	20	19	16	43	1.88
67419976--67420032	29	2.0	29	100	0	114	38	21	12	28	1.89
67422183--67422242	27	2.3	26	91	8	95	63	0	1	35	1.05
67422244--67422269	11	2.4	11	100	0	52	53	0	7	38	1.30
67422828--67422884	27	2.1	27	87	6	80	50	3	12	33	1.57
67424004--67424160	72	2.2	73	83	1	199	42	8	19	29	1.81
67424054--67424160	36	2.9	36	76	1	106	43	7	19	28	1.78
67424613--67424725	49	2.3	49	79	13	133	38	17	21	22	1.93
67425149--67425406	81	3.2	81	79	3	252	34	27	14	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228