genome.fa.s23.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  212  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62011247--62011285	13	3.1	13	92	3	62	46	38	0	15	1.46
62011828--62011870	16	2.7	16	81	0	59	37	2	9	51	1.47
62012121--62012173	22	2.4	22	93	0	88	30	52	3	13	1.57
62013131--62013201	3	23.3	3	71	8	54	30	2	5	60	1.34
62013144--62013204	23	2.8	22	85	5	70	32	3	8	55	1.45
62013167--62013212	23	2.0	23	83	8	58	30	2	10	56	1.46
62013764--62013790	11	2.5	11	100	0	54	29	7	7	55	1.55
62025829--62026006	73	2.5	71	79	5	191	26	16	23	33	1.96
62026010--62026629	73	8.5	72	86	3	792	30	17	20	32	1.96
62026010--62026629	145	4.2	145	85	2	805	30	17	20	32	1.96
62026010--62026593	218	2.7	218	94	1	1001	29	17	21	32	1.96
62026607--62026999	217	1.8	216	88	1	599	28	16	20	33	1.95
62027735--62027787	22	2.4	22	93	0	88	30	52	3	13	1.57
62028251--62028295	18	2.5	18	89	7	65	0	53	0	46	1.00
62028924--62028959	3	12.0	3	87	0	54	30	2	0	66	1.06
62029393--62029419	11	2.5	11	100	0	54	29	7	7	55	1.55
62033642--62033692	8	6.4	8	75	8	50	66	1	0	31	1.03
62034048--62034086	19	2.1	18	86	13	53	64	10	5	20	1.44
62040396--62040957	51	10.9	51	79	8	532	30	28	16	24	1.97
62040924--62040993	36	1.9	36	88	0	104	27	28	15	28	1.96
62042238--62042330	18	5.2	18	88	0	132	29	24	15	31	1.95
62042244--62042330	36	2.4	36	96	0	156	29	24	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62046384--62046414	11	2.8	11	95	0	53	19	48	3	29	1.64
62056812--62056846	14	2.6	14	90	4	54	85	0	14	0	0.59
62058155--62059127	50	19.5	49	69	7	332	32	23	19	24	1.97
62058143--62059146	100	10.1	100	85	2	1234	32	23	19	24	1.97
62059285--62059319	18	1.9	18	88	0	52	22	31	11	34	1.90
62060858--62060920	3	21.0	3	100	0	126	33	0	0	66	0.92
62061175--62061235	20	3.4	20	64	36	57	26	4	4	63	1.35
62061171--62061234	33	1.9	33	100	0	128	26	4	6	62	1.39
62061318--62061356	16	2.4	17	86	4	53	48	0	0	51	1.00
62061662--62062094	110	4.0	110	90	1	597	31	17	18	33	1.94
62062429--62062461	13	2.5	14	85	14	52	27	0	0	72	0.85
62062594--62062629	17	2.1	18	89	5	56	33	16	2	47	1.61
62081567--62081593	6	4.5	6	100	0	54	62	0	0	37	0.95
62081608--62081647	16	2.5	16	91	0	62	47	2	7	42	1.45
62081580--62081632	22	2.4	22	87	0	70	52	1	1	43	1.23
62081658--62081797	59	2.4	59	97	0	262	39	3	9	47	1.53
62081903--62081947	23	1.9	24	90	4	74	60	2	0	37	1.09
62088747--62088791	21	2.1	22	87	4	65	80	2	4	13	0.97
62088747--62088809	22	2.8	22	83	13	67	76	6	3	14	1.11
62089471--62089520	22	2.2	21	82	10	55	72	4	2	22	1.12
62089503--62089531	11	2.6	11	100	0	58	62	0	0	37	0.96
62089949--62090023	37	2.0	37	100	0	150	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62103815--62103868	22	2.5	21	84	3	72	53	1	1	42	1.22
62103844--62103883	16	2.5	16	91	0	62	47	2	7	42	1.45
62103850--62104071	59	3.5	64	80	15	243	40	4	8	45	1.56
62104136--62104179	23	1.9	23	90	9	72	59	2	0	38	1.10
62110978--62111022	21	2.1	22	87	4	65	80	2	4	13	0.97
62110978--62111040	22	2.8	22	83	13	67	76	6	3	14	1.11
62111703--62111752	22	2.2	21	82	10	55	72	4	2	22	1.12
62111735--62111763	11	2.6	11	100	0	58	62	0	0	37	0.96
62112181--62112255	37	2.0	37	100	0	150	28	18	26	26	1.98
62116631--62116683	21	2.5	21	73	11	54	43	35	0	20	1.52
62124597--62124714	61	2.0	60	88	5	175	29	19	11	38	1.87
62127641--62127702	15	4.1	15	74	12	63	59	1	3	35	1.23
62128694--62128733	16	2.5	15	84	11	53	35	2	0	62	1.09
62132740--62133213	234	2.0	234	97	0	894	33	14	14	37	1.86
62135826--62135852	4	6.8	4	100	0	54	0	74	0	25	0.83
62136077--62136156	38	2.1	38	88	4	117	30	8	23	37	1.85
62138403--62138810	204	2.0	204	99	0	807	29	13	20	35	1.92
62148160--62148202	20	2.2	20	86	0	59	11	6	34	46	1.67
62149636--62149691	26	2.2	26	86	0	76	66	5	1	26	1.23
62149647--62149722	37	2.0	38	90	7	120	64	0	1	34	1.02
62154001--62154025	3	8.3	3	100	0	50	68	0	0	32	0.90
62154121--62154287	87	1.9	88	91	1	273	23	11	10	53	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62158843--62159010	87	1.9	87	89	3	257	38	20	9	32	1.85
62159045--62159093	18	2.6	19	78	18	57	63	0	2	34	1.06
62159045--62159104	19	3.1	19	78	2	66	65	0	1	33	1.03
62159390--62159444	20	2.8	20	78	13	60	29	5	0	65	1.15
62159390--62159434	21	2.1	21	84	8	56	28	6	0	64	1.19
62159530--62159751	91	2.4	91	83	5	288	34	9	20	35	1.85
62165295--62165350	29	1.9	29	88	0	85	62	0	1	35	1.06
62165333--62165370	12	3.3	11	89	10	58	55	0	2	42	1.14
62165326--62165432	42	2.6	43	77	8	132	56	0	1	42	1.10
62165397--62165430	17	2.0	17	94	0	59	61	0	0	38	0.96
62165398--62165436	17	2.2	17	86	4	51	66	0	0	33	0.92
62165398--62165443	18	2.6	17	82	3	56	60	0	0	39	0.97
62180113--62180171	19	3.0	20	83	11	70	59	5	1	33	1.29
62180113--62180157	20	2.2	20	88	7	65	64	4	2	28	1.25
62184569--62184635	32	2.1	32	94	0	116	20	14	34	29	1.93
62187034--62187110	18	4.2	18	71	15	59	40	2	1	55	1.22
62190310--62190356	24	2.0	24	91	0	76	19	23	19	38	1.93
62192014--62192119	42	2.5	42	84	1	131	23	20	24	31	1.98
62194671--62194783	19	5.8	19	85	4	163	34	15	10	38	1.83
62194671--62194782	40	2.8	40	93	2	183	34	15	10	39	1.82
62194997--62195844	44	19.6	43	70	14	396	27	22	19	30	1.98
62194986--62195866	217	4.1	217	92	1	1390	27	22	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62195859--62196343	132	3.7	131	91	1	749	25	23	18	31	1.97
62195883--62196067	44	4.2	44	64	13	110	25	22	20	31	1.98
62202340--62202536	98	2.0	98	92	0	331	37	24	9	28	1.87
62203836--62203948	19	5.8	19	81	4	145	34	15	10	38	1.83
62203836--62203947	40	2.8	40	90	2	165	34	15	10	39	1.82
62205673--62205712	16	2.5	16	91	0	62	47	2	7	42	1.45
62205723--62205862	59	2.4	59	95	0	244	38	5	9	47	1.58
62205968--62206011	24	1.9	22	90	9	70	65	0	0	34	0.93
62207196--62207234	15	2.6	15	95	0	69	56	10	7	25	1.59
62210391--62210433	3	14.3	3	100	0	86	0	32	0	67	0.91
62218084--62218119	14	2.5	15	90	4	56	58	0	0	41	0.98
62230243--62230313	5	14.6	5	71	21	53	38	1	4	56	1.28
62230271--62230318	19	2.5	19	83	10	62	43	4	0	52	1.20
62230323--62230364	15	2.7	15	88	3	57	73	2	19	4	1.12
62230414--62230441	4	7.0	4	100	0	56	75	0	25	0	0.81
62230926--62230983	30	1.9	30	89	0	89	41	3	24	31	1.71
62231195--62231226	13	2.5	13	94	0	55	31	0	12	56	1.37
62231321--62231562	50	4.7	50	84	4	279	26	23	28	20	1.99
62231321--62231570	100	2.4	103	86	6	346	26	23	28	21	1.99
62235889--62235918	10	3.0	10	100	0	60	60	0	0	40	0.97
62236900--62236938	18	2.1	19	95	4	71	30	5	5	58	1.41
62243486--62243531	20	2.2	22	88	7	69	67	13	19	0	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62246746--62246880	67	2.0	67	95	0	243	31	10	14	44	1.78
62251921--62251997	29	2.6	29	79	4	82	48	15	14	22	1.81
62252378--62252434	28	2.0	28	100	0	114	42	3	17	36	1.67
62253707--62253748	17	2.6	17	85	7	52	19	21	0	59	1.38
62254769--62254804	14	2.5	14	86	4	54	11	0	19	69	1.18
62257032--62257070	20	2.0	19	85	14	53	51	0	10	38	1.36
62257881--62257991	37	2.9	37	80	11	111	62	1	4	31	1.26
62261954--62262005	17	2.9	17	80	11	52	65	5	1	26	1.26
62263344--62263409	28	2.3	29	78	14	84	43	3	0	53	1.16
62263902--62263928	14	1.9	14	100	0	54	55	7	14	22	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228