genome.fa.s23.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  68  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20364470--20364509	21	1.9	21	100	0	80	55	5	10	30	1.54
20366038--20366093	28	2.0	29	85	3	78	50	0	39	10	1.37
20366270--20366490	114	1.9	114	81	4	268	34	22	15	27	1.94
20367058--20367229	7	24.1	7	71	13	66	44	34	0	19	1.55
20367132--20367311	72	2.5	72	82	5	215	46	28	1	23	1.59
20367107--20367311	14	14.4	14	69	7	99	45	31	0	22	1.59
20367862--20367991	40	3.2	40	78	2	118	22	19	23	34	1.96
20368351--20368393	20	2.2	20	91	0	68	27	2	20	48	1.62
20368944--20368977	11	3.0	11	87	8	50	29	0	0	70	0.87
20368944--20368976	12	2.8	12	90	4	50	27	0	0	72	0.85
20370385--20370423	20	2.0	20	90	10	62	15	23	5	56	1.59
20370712--20370814	50	2.1	50	84	0	134	18	31	22	28	1.97
20372104--20372167	32	2.0	32	84	6	85	68	9	7	14	1.38
20372491--20372529	19	2.0	20	90	5	62	30	10	0	58	1.31
20372446--20372563	60	2.0	60	86	6	168	38	8	0	52	1.32
20372491--20372530	20	2.0	20	85	9	55	32	10	0	57	1.32
20381829--20381876	19	2.5	19	89	0	69	20	20	27	31	1.98
20385183--20385207	13	1.9	13	100	0	50	56	16	12	16	1.68
20396790--20396927	66	2.1	66	86	2	188	16	22	18	42	1.89
20397915--20398004	45	2.0	45	95	0	162	47	13	6	32	1.68
20402925--20402996	27	2.9	24	72	11	72	50	2	4	43	1.36
20403084--20403126	5	8.2	5	85	10	59	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20411564--20411596	11	3.0	11	90	0	57	18	0	24	57	1.40
20413001--20413096	37	2.6	38	86	3	140	30	37	15	16	1.90
20415957--20415999	19	2.3	18	80	11	50	67	2	9	20	1.30
20418049--20418103	3	18.0	3	96	3	101	34	0	0	65	0.93
20424453--20424722	50	5.4	50	73	0	234	30	20	24	24	1.99
20424438--20424696	100	2.6	100	95	2	466	28	21	24	25	1.99
20424716--20425163	132	3.4	132	92	0	682	28	19	24	27	1.99
20426730--20426780	3	17.0	3	91	0	84	33	3	0	62	1.13
20433262--20433353	25	3.9	22	83	7	67	38	22	23	15	1.92
20433285--20433392	25	4.3	25	94	2	173	39	23	21	15	1.91
20433693--20433726	11	3.2	11	87	4	52	20	2	0	76	0.92
20434222--20434253	12	2.6	13	85	14	50	40	25	0	34	1.56
20434429--20434454	11	2.4	11	100	0	52	0	42	7	50	1.31
20434514--20434548	5	6.8	5	87	6	52	60	0	0	40	0.97
20434505--20434548	21	2.0	22	95	4	81	59	0	0	40	0.98
20435303--20435513	64	3.3	65	67	13	175	36	14	16	32	1.89
20435301--20435604	130	2.3	130	90	2	477	36	14	16	32	1.89
20438809--20438872	24	2.7	24	82	0	74	50	15	12	21	1.77
20440116--20440193	42	1.9	42	89	5	124	66	10	11	11	1.45
20442741--20442947	112	1.8	109	83	7	245	32	17	16	32	1.93
20445945--20445994	24	2.1	24	88	0	73	56	2	6	36	1.36
20445949--20446001	24	2.2	23	80	9	61	56	1	5	35	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20446032--20446382	161	2.1	164	89	4	530	54	3	5	36	1.43
20446361--20446401	19	2.2	19	86	0	55	53	2	2	41	1.27
20446187--20446571	189	2.1	189	90	3	620	54	3	5	36	1.39
20449430--20449707	90	3.1	88	75	8	272	50	12	7	28	1.69
20460982--20461031	26	2.0	25	84	11	66	54	0	2	44	1.11
20465274--20465314	13	3.1	13	80	19	57	39	0	2	58	1.11
20467291--20467343	19	2.7	19	85	8	63	24	5	0	69	1.09
20467328--20467369	21	2.0	21	85	4	57	45	7	0	47	1.30
20467390--20467436	9	5.4	9	80	17	55	46	0	2	51	1.13
20467385--20467436	16	3.0	17	86	11	70	44	0	1	53	1.11
20469837--20469861	11	2.3	11	100	0	50	44	20	16	20	1.87
20472864--20472967	30	3.6	29	67	24	74	57	3	4	33	1.38
20473407--20473543	51	2.7	51	79	0	175	40	13	6	39	1.71
20476209--20476345	51	2.7	51	79	0	175	40	13	6	39	1.71
20477017--20477056	13	3.0	13	85	3	53	62	0	0	37	0.95
20477014--20477074	22	2.7	23	76	16	65	59	0	0	40	0.98
20486261--20486308	20	2.4	20	100	0	96	35	16	10	37	1.83
20486400--20486442	9	4.8	9	80	11	52	67	0	0	32	0.91
20486399--20486438	19	2.0	20	90	4	64	67	0	0	32	0.91
20486385--20486461	28	2.8	27	86	7	102	66	0	3	29	1.10
20486428--20486529	19	5.3	18	77	12	69	63	3	5	26	1.35
20486385--20486519	10	14.3	9	72	15	80	62	2	4	30	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20486397--20486528	47	2.7	47	73	15	119	62	3	4	29	1.30
20486984--20487189	90	2.4	86	83	8	240	33	7	21	37	1.82
20488738--20488969	43	5.5	42	80	9	222	22	15	26	35	1.94
20488738--20488974	85	2.8	85	88	0	305	22	16	25	35	1.94
20491935--20492051	34	3.5	33	81	14	136	40	0	14	45	1.45
20492111--20492381	125	2.2	125	85	6	361	36	15	18	29	1.92
20496513--20497577	531	2.0	533	99	0	2116	39	14	14	31	1.86
20499872--20499995	3	41.7	3	96	1	232	66	0	33	0	0.92
20500846--20500891	9	4.9	9	84	10	65	26	0	0	73	0.83
20500816--20500891	29	2.7	28	82	8	75	23	1	6	68	1.21
20505846--20505884	21	1.9	20	84	5	51	15	15	5	64	1.46
20510863--20510899	18	2.1	18	100	0	74	21	0	10	67	1.21
20512707--20512743	12	3.1	12	88	0	56	24	32	29	13	1.93
20513196--20513517	48	6.7	48	91	1	484	48	12	7	31	1.69
20516687--20516746	30	2.0	31	86	3	86	40	0	40	20	1.52
20516960--20516996	9	4.1	9	89	0	56	32	10	10	45	1.74
20517050--20517080	9	3.4	9	90	0	53	38	22	12	25	1.90
20518446--20518490	24	1.9	24	86	4	65	73	13	0	13	1.10
20519083--20519112	15	2.0	15	93	0	51	50	23	0	26	1.50
20520849--20520948	40	2.5	40	86	6	130	37	3	0	60	1.12
20520889--20520948	31	1.9	31	90	6	95	40	1	0	58	1.08
20523322--20523405	43	2.0	43	82	11	104	36	14	0	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20535909--20536286	50	7.6	49	69	10	196	32	24	20	22	1.98
20535846--20536380	99	5.4	99	82	5	578	31	23	21	23	1.98
20535846--20536286	149	3.0	148	71	9	392	32	24	20	22	1.98
20535858--20536338	149	3.2	147	70	8	364	31	24	21	22	1.98
20537789--20537935	41	3.6	40	78	11	145	27	24	19	27	1.99
20537873--20537950	41	1.9	40	82	10	95	30	25	17	25	1.97
20539678--20539702	13	1.9	13	100	0	50	68	24	0	8	1.16
20544933--20544967	17	2.1	17	89	10	54	60	0	0	40	0.97
20545641--20545787	41	3.6	40	77	11	145	27	24	19	27	1.99
20545725--20545802	41	1.9	40	84	10	104	29	25	19	25	1.98
20546613--20546654	18	2.3	18	100	0	84	16	23	11	47	1.80
20547537--20547561	13	1.9	13	100	0	50	68	24	0	8	1.16
20550632--20550683	23	2.3	22	80	9	59	38	0	7	53	1.30
20553506--20553535	14	2.1	14	93	0	51	50	10	6	33	1.62
20558215--20558254	3	13.3	3	100	0	80	67	0	0	32	0.91
20565570--20565619	22	2.3	22	92	0	82	66	14	10	10	1.46
20566758--20566888	61	2.1	63	88	5	196	20	22	22	34	1.97
20570145--20570296	44	3.5	44	92	3	261	50	10	1	36	1.48
20570167--20570280	22	5.2	22	64	23	69	50	10	1	37	1.47
20570222--20570291	22	3.2	22	67	15	63	50	12	0	37	1.41
20570344--20570419	22	3.2	21	67	22	53	60	1	15	22	1.42
20570327--20570665	49	7.1	48	88	5	463	61	1	12	23	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20570342--20570421	21	3.5	21	67	26	54	60	1	16	22	1.43
20570331--20570665	144	2.3	142	87	6	476	62	1	12	23	1.38
20570363--20570647	26	12.1	22	65	23	93	62	0	12	24	1.34
20570512--20570551	20	2.0	20	85	9	55	62	0	12	25	1.30
20570583--20570646	20	3.2	20	78	10	60	64	1	7	26	1.30
20570379--20570663	21	12.2	22	70	20	170	62	0	12	24	1.34
20570656--20570712	5	10.6	5	87	7	69	57	0	22	19	1.40
20570656--20570712	27	2.1	27	93	0	96	57	0	22	19	1.40
20570656--20570712	22	2.6	21	91	5	87	57	0	22	19	1.40
20570682--20570718	17	2.2	17	90	0	56	64	0	21	13	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228