genome.fa.s23.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  211  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61698496--61698531	3	12.0	3	87	0	54	61	2	36	0	1.11
61699801--61699825	3	8.3	3	100	0	50	0	32	0	68	0.90
61700604--61700717	60	1.9	60	85	7	160	40	8	9	41	1.69
61700682--61700735	20	2.7	20	77	11	56	35	11	9	44	1.72
61700775--61700869	40	2.4	41	82	12	117	38	14	8	37	1.77
61700775--61700873	20	4.9	20	76	11	105	38	14	10	37	1.79
61700876--61700922	20	2.3	20	88	0	67	29	8	19	42	1.80
61700985--61701231	20	12.6	20	71	9	159	36	8	13	40	1.76
61703174--61703211	17	2.2	17	86	9	51	28	2	0	68	1.03
61703190--61703236	20	2.4	19	80	13	51	25	4	2	68	1.19
61703423--61703489	20	3.3	20	69	8	64	29	4	2	62	1.29
61703432--61703494	19	3.2	19	69	13	56	25	4	3	66	1.26
61703460--61703513	26	2.0	27	82	10	67	24	5	1	68	1.21
61708449--61708524	38	2.0	38	97	0	143	39	17	15	27	1.90
61709028--61709080	17	3.3	17	65	24	51	41	18	15	24	1.89
61709020--61709080	31	2.0	31	100	0	122	42	16	16	24	1.88
61713008--61713059	24	2.2	24	82	6	61	26	3	5	63	1.34
61713140--61713165	11	2.4	11	100	0	52	53	0	0	46	1.00
61716283--61716329	24	2.0	24	91	8	78	48	14	0	36	1.44
61717612--61717655	22	2.0	21	86	4	61	43	4	11	40	1.61
61717617--61717709	22	4.2	22	67	17	59	38	6	11	43	1.67
61717634--61717727	44	2.1	44	98	0	179	43	6	12	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61731729--61731901	69	2.5	68	83	2	204	28	15	22	32	1.95
61731919--61732256	72	4.4	76	85	5	425	33	14	19	32	1.92
61731919--61732281	79	4.8	77	83	5	425	32	14	19	33	1.92
61732414--61732554	72	2.0	72	94	0	246	21	14	24	39	1.91
61732414--61732707	159	1.8	160	85	5	416	27	14	21	36	1.93
61732546--61732749	71	2.8	73	83	10	240	33	13	18	34	1.90
61743569--61743611	11	3.9	11	82	11	61	53	0	0	46	1.00
61743562--61743613	22	2.3	23	86	3	79	53	0	0	46	1.00
61743563--61743614	11	4.6	11	75	20	54	53	0	0	46	1.00
61743617--61743715	17	5.9	17	77	11	107	61	0	2	36	1.07
61743585--61743656	27	2.6	29	78	10	87	58	0	1	40	1.07
61743617--61743715	31	3.0	32	82	10	110	61	0	2	36	1.07
61743608--61743715	48	2.3	46	85	6	139	62	0	1	35	1.06
61753554--61753715	78	2.1	78	100	0	324	45	20	14	19	1.86
61759845--61759971	58	2.2	58	81	8	141	24	12	12	50	1.75
61766249--61766304	21	2.7	21	83	5	69	14	35	25	25	1.93
61766290--61766341	21	2.5	21	90	0	77	19	26	21	32	1.97
61766365--61766420	21	2.7	21	85	0	76	14	30	25	30	1.95
61766270--61766548	95	2.9	95	81	2	283	19	32	18	29	1.96
61769326--61769395	30	2.3	30	85	0	86	22	34	25	17	1.96
61778445--61778489	20	2.2	20	96	0	81	17	20	17	44	1.87
61790111--61790171	7	8.7	7	83	0	68	24	9	34	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61790111--61790166	21	2.7	21	85	0	76	26	8	32	32	1.87
61791721--61791746	2	13.0	2	100	0	52	50	0	0	50	1.00
61793969--61793996	3	9.3	3	100	0	56	64	0	0	35	0.94
61794484--61794508	2	12.5	2	100	0	50	48	0	0	52	1.00
61794967--61794996	14	2.1	14	93	0	51	56	13	20	10	1.65
61795577--61795652	39	2.0	40	89	5	120	55	6	1	36	1.34
61796222--61796255	15	2.3	15	94	0	59	38	0	5	55	1.24
61797343--61797407	31	2.1	31	88	0	94	43	12	12	32	1.79
61800571--61800624	3	18.0	3	92	0	72	1	5	33	59	1.31
61800923--61800949	2	13.5	2	100	0	54	51	0	48	0	1.00
61802066--61802091	8	3.2	8	100	0	52	11	0	0	88	0.52
61804360--61804726	46	7.6	49	86	8	431	34	14	22	29	1.93
61804360--61804726	98	3.7	97	84	9	492	34	14	22	29	1.93
61804374--61804726	196	1.8	196	92	0	598	34	14	22	28	1.93
61804690--61804799	37	3.0	37	94	1	195	37	16	21	24	1.93
61804360--61804715	150	2.4	149	89	4	458	34	14	21	29	1.93
61823104--61823170	34	1.9	35	87	3	100	44	14	8	31	1.76
61827329--61827376	17	2.9	16	81	9	51	41	4	2	52	1.32
61827383--61827422	21	1.9	21	89	0	62	57	2	2	37	1.26
61828690--61828734	16	2.7	18	80	16	60	24	2	4	68	1.19
61830147--61830272	50	2.5	50	84	5	146	33	21	7	38	1.81
61832070--61832116	23	2.0	24	83	4	60	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61833086--61833129	20	2.2	19	88	8	61	34	0	0	65	0.93
61843831--61843869	19	2.1	19	85	9	53	41	0	0	58	0.98
61848274--61848300	2	13.5	2	100	0	54	51	48	0	0	1.00
61849265--61849306	22	1.9	22	95	0	75	42	0	16	40	1.48
61851260--61851301	22	2.1	19	86	13	57	45	0	4	50	1.23
61851629--61851659	14	2.2	14	94	0	53	54	6	0	38	1.26
61856467--61856507	10	3.8	10	84	15	55	48	12	2	36	1.54
61856462--61856506	14	3.3	14	84	3	56	48	15	2	33	1.57
61859556--61859616	6	10.3	6	85	3	52	22	3	26	47	1.67
61859550--61859616	12	5.7	12	78	3	64	25	2	23	47	1.66
61859570--61859616	18	2.6	18	82	0	58	25	4	23	46	1.70
61861871--61861900	15	1.9	16	93	6	53	36	6	0	56	1.26
61866268--61866297	15	1.9	16	93	6	53	46	0	6	46	1.29
61867905--61867971	31	2.2	31	86	5	91	41	7	16	34	1.76
61868081--61868105	7	3.6	7	100	0	50	0	12	0	88	0.53
61869634--61869718	30	2.8	30	80	7	100	4	28	18	48	1.68
61869679--61869718	15	2.7	15	80	0	53	5	22	20	52	1.65
61872289--61872366	34	2.3	36	78	14	94	43	0	1	55	1.08
61872297--61872382	34	2.7	32	78	12	79	44	0	1	54	1.07
61878927--61878963	19	1.9	19	100	0	74	37	13	21	27	1.91
61882053--61882104	24	2.2	24	89	0	77	55	9	1	32	1.43
61882968--61883010	19	2.2	20	83	8	52	53	0	11	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61883965--61883997	16	1.9	18	88	11	52	30	33	0	36	1.58
61898335--61898363	7	4.1	7	100	0	58	55	0	0	44	0.99
61902157--61902380	111	2.0	111	98	0	430	27	11	19	41	1.86
61924642--61924708	31	2.2	31	88	0	98	41	11	11	34	1.79
61941854--61941910	25	2.3	25	75	6	62	38	17	21	22	1.93
61958907--61958946	19	2.1	19	90	0	62	55	5	17	22	1.61
61959284--61959323	19	2.1	19	86	13	55	12	7	2	77	1.07
61972757--61972796	20	2.0	20	90	0	62	30	10	10	50	1.69
61972742--61972808	34	1.9	35	87	3	100	32	8	11	46	1.72
61975203--61975256	22	2.5	22	75	6	56	11	14	14	59	1.62
61977838--61977867	13	2.3	13	94	0	51	6	10	13	70	1.34
61978140--61978198	28	2.1	28	93	0	100	38	3	20	37	1.69
61978553--61978834	75	3.8	75	90	0	411	32	20	18	27	1.96
61983592--61983644	27	1.9	28	84	3	72	41	11	9	37	1.73
61983887--61983948	21	3.1	21	75	20	62	33	1	0	64	1.03
61983883--61983944	19	3.1	20	72	22	67	33	1	0	64	1.03
61990655--61990767	51	2.2	51	82	3	138	22	33	21	23	1.97
61991555--61991591	6	6.0	6	90	6	56	45	37	0	16	1.47
61991555--61991591	19	2.0	18	89	5	56	45	37	0	16	1.47
61991553--61991591	13	3.1	13	92	3	62	46	38	0	15	1.46
61992134--61992176	16	2.7	16	81	0	59	37	2	9	51	1.47
61992427--61992478	22	2.4	22	93	3	88	30	51	3	13	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61992919--61992962	11	3.9	11	87	3	52	0	59	0	40	0.98
61993427--61993496	3	23.3	3	71	11	54	31	2	5	60	1.35
61993439--61993499	23	2.8	22	85	5	70	32	3	8	55	1.45
61993462--61993507	23	2.0	23	83	8	58	30	2	10	56	1.46
61994059--61994083	11	2.3	11	100	0	50	28	8	8	56	1.57
61994113--61994158	24	2.0	23	86	4	65	30	15	4	50	1.63
61994960--61994984	1	25.0	1	100	0	50	0	0	0	100	0.00
62010349--62010461	51	2.2	51	82	3	138	22	33	21	23	1.97
62011249--62011285	6	6.0	6	90	6	56	45	37	0	16	1.47
62011249--62011285	19	2.0	18	89	5	56	45	37	0	16	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228