genome.fa.s23.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  179  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53538731--53538768	18	2.1	18	95	0	67	23	28	7	39	1.83
53539545--53539920	123	3.0	123	88	2	547	33	22	14	29	1.94
53540522--53540561	21	1.9	21	84	0	53	50	0	0	50	1.00
53542925--53543128	72	2.8	72	89	0	320	28	15	20	35	1.93
53550436--53550517	27	3.0	27	96	0	155	25	21	23	29	1.99
53554467--53554663	44	4.5	44	70	13	129	33	20	20	25	1.97
53554377--53554673	129	2.3	129	84	0	378	34	20	19	26	1.96
53554367--53554705	129	2.6	129	78	4	355	34	20	18	26	1.96
53557141--53557274	71	1.9	70	90	1	214	28	16	20	34	1.95
53559024--53559080	18	3.0	19	75	14	55	56	1	3	38	1.27
53567500--53567547	21	2.2	22	85	3	62	50	12	6	31	1.65
53568637--53568674	14	2.6	14	84	15	51	39	0	2	57	1.12
53571312--53571777	43	10.8	43	79	4	311	27	24	22	25	2.00
53571525--53571832	129	2.4	129	81	4	318	26	23	24	25	2.00
53572143--53572182	21	1.9	21	84	0	53	5	37	20	37	1.74
53572143--53572320	87	2.0	87	91	4	288	11	30	19	39	1.86
53572224--53572269	21	2.2	21	88	0	65	2	39	19	39	1.64
53574792--53575025	62	3.8	62	84	10	268	31	1	20	46	1.61
53574776--53575025	9	28.7	9	71	16	188	31	2	20	46	1.62
53574778--53575025	25	9.5	26	72	18	137	31	2	20	45	1.62
53574920--53575004	34	2.5	34	96	0	152	28	0	24	47	1.53
53575117--53575157	13	2.8	15	85	14	59	34	0	19	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53575116--53575194	16	5.0	16	75	13	74	34	1	17	46	1.56
53575245--53575295	21	2.4	22	80	9	70	50	1	0	47	1.12
53577034--53577060	11	2.5	11	100	0	54	55	0	18	25	1.43
53577939--53577990	27	1.9	27	84	0	68	48	9	0	42	1.36
53579376--53579442	14	4.9	14	78	14	59	41	29	0	28	1.56
53579935--53580255	41	7.8	41	72	9	224	36	21	23	18	1.95
53579976--53580131	83	1.9	83	86	2	224	37	22	21	19	1.95
53583532--53583578	15	3.2	14	80	16	51	31	2	8	57	1.41
53583536--53583581	14	3.1	14	84	6	56	28	2	8	60	1.38
53588300--53588858	44	12.7	45	77	5	516	29	26	16	27	1.97
53588373--53588866	132	3.7	132	96	0	880	29	25	16	27	1.97
53609912--53609940	8	3.6	8	100	0	58	62	0	0	37	0.96
53609903--53609951	16	2.9	17	82	11	66	55	2	4	38	1.31
53611693--53611757	29	2.2	29	83	5	76	52	6	7	33	1.55
53613112--53613150	3	13.0	3	100	0	78	33	0	0	66	0.92
53631475--53631499	11	2.3	11	100	0	50	76	0	24	0	0.80
53634651--53634732	41	2.0	41	100	0	164	26	31	7	34	1.84
53641662--53641711	24	2.1	23	85	3	64	48	4	0	48	1.20
53651668--53651702	16	2.2	16	94	0	61	37	14	14	34	1.86
53658545--53658613	35	2.0	35	97	0	129	50	17	11	20	1.76
53661549--53661692	41	3.5	41	93	0	225	30	21	20	27	1.98
53661830--53662004	64	2.7	67	79	8	182	42	14	8	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53663376--53663475	46	2.1	47	92	1	166	28	1	30	41	1.63
53666450--53666495	23	2.0	23	86	0	65	8	41	17	32	1.80
53668927--53668962	19	1.9	19	88	5	56	50	8	0	41	1.33
53671087--53671166	39	2.1	39	95	0	142	20	20	21	38	1.93
53674800--53674844	21	2.0	22	83	8	56	15	11	8	64	1.49
53676437--53676554	41	2.9	41	89	0	164	19	21	33	26	1.97
53677199--53677229	15	2.1	15	93	0	53	19	0	45	35	1.51
53677202--53677239	14	2.6	15	87	4	51	23	0	39	36	1.55
53677243--53677299	15	3.9	15	81	2	71	21	0	43	35	1.52
53676832--53677713	299	3.0	296	86	5	1143	28	2	27	41	1.68
53677500--53677546	14	3.3	15	88	8	71	25	0	34	40	1.56
53677493--53677610	21	5.5	21	70	11	71	27	0	33	38	1.63
53677543--53677616	15	5.1	14	76	16	64	27	1	33	37	1.65
53686894--53686921	3	9.3	3	100	0	56	35	0	32	32	1.58
53687699--53688035	43	7.9	43	82	4	353	29	16	27	26	1.97
53687699--53688050	85	4.1	86	81	5	358	28	17	27	26	1.97
53699448--53699631	45	4.1	44	86	4	228	34	15	20	29	1.94
53699448--53699844	89	4.3	90	73	13	317	32	16	20	30	1.95
53699464--53699651	45	4.2	44	81	9	204	34	16	21	28	1.95
53713435--53713490	24	2.3	24	84	0	76	39	10	17	32	1.84
53713800--53714083	88	3.2	88	89	0	451	27	19	24	28	1.99
53714026--53714526	132	3.8	132	89	1	729	29	19	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53714803--53714963	88	1.8	88	82	2	207	29	19	21	29	1.98
53718559--53718602	22	2.0	22	86	0	61	38	2	22	36	1.67
53719185--53719241	30	1.9	30	88	0	87	15	15	24	43	1.86
53722281--53722322	21	2.0	21	85	0	57	59	11	0	28	1.33
53722327--53722371	21	2.3	19	84	7	54	46	8	0	44	1.34
53727775--53727968	94	2.1	94	99	0	381	42	18	7	31	1.77
53729730--53729776	16	3.1	16	90	6	71	57	0	0	42	0.98
53732945--53733145	41	4.9	41	84	3	235	29	19	27	23	1.98
53733332--53733420	37	2.5	35	89	7	128	26	11	28	33	1.91
53740291--53740449	41	3.9	41	88	1	221	27	20	28	23	1.99
53740291--53740492	41	4.9	41	81	6	180	29	19	27	23	1.98
53740291--53740490	82	2.4	82	80	8	221	29	19	27	23	1.98
53740680--53740756	37	2.1	37	92	0	127	29	6	27	36	1.82
53742855--53742888	6	5.7	6	96	0	59	29	0	0	70	0.87
53743570--53743609	20	2.0	20	100	0	80	25	20	15	40	1.90
53754820--53754862	20	2.1	20	83	12	52	67	0	4	27	1.10
53764193--53764243	19	2.7	19	88	8	70	43	5	19	31	1.75
53766020--53766066	9	5.8	8	82	9	51	59	2	4	34	1.29
53777400--53777452	3	17.7	3	100	0	106	33	0	33	32	1.58
53786974--53787017	2	22.0	2	80	0	52	40	0	59	0	0.98
53791037--53791266	112	2.1	112	99	0	451	40	13	22	23	1.89
53794443--53794469	4	6.8	4	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53797761--53798069	152	2.0	153	97	2	584	36	12	19	32	1.89
53798264--53798314	26	2.0	26	84	7	68	27	11	11	49	1.74
53803352--53803541	102	1.9	102	84	0	254	40	15	12	32	1.84
53810080--53810117	16	2.4	16	91	8	60	42	0	28	28	1.56
53810099--53810191	44	2.1	46	89	4	145	29	4	30	36	1.77
53810099--53810204	39	2.5	44	82	11	132	30	3	31	34	1.75
53810340--53810376	16	2.2	17	86	13	51	59	0	0	40	0.97
53810333--53810372	14	2.9	15	82	14	50	52	0	0	47	1.00
53810368--53810402	15	2.2	17	90	10	56	51	5	0	42	1.25
53810357--53810664	61	5.1	61	69	13	260	50	4	2	43	1.35
53810328--53810679	120	2.9	120	96	0	659	50	3	2	43	1.34
53810462--53810496	18	2.0	17	88	5	52	54	0	2	42	1.15
53810488--53810517	15	1.9	16	93	6	53	50	6	0	43	1.28
53810582--53810616	18	2.0	17	88	5	52	54	0	0	45	0.99
53810328--53810616	59	4.8	59	70	14	225	50	3	2	43	1.30
53810608--53810637	15	1.9	16	93	6	53	50	6	0	43	1.28
53811670--53811694	13	1.9	13	100	0	50	8	28	16	48	1.74
53814963--53815016	16	3.4	16	84	0	72	42	5	29	22	1.76
53814995--53815082	45	2.0	44	82	6	106	31	5	26	36	1.80
53815174--53815262	35	2.5	35	80	10	92	51	2	1	44	1.21
53819012--53819038	14	1.9	14	100	0	54	62	0	29	7	1.22
53824040--53824075	15	2.4	15	100	0	72	25	13	36	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53827100--53827226	67	1.9	67	95	0	227	36	19	10	33	1.86
53827893--53827922	15	2.1	15	93	6	53	53	26	0	20	1.46
53827891--53827928	14	2.6	16	84	16	55	55	26	0	18	1.43
53830975--53831031	19	2.7	22	84	10	66	36	8	15	38	1.79
53846980--53847010	4	7.8	4	92	0	53	25	0	22	51	1.48
53849040--53849079	13	3.1	13	92	0	71	30	7	25	37	1.83
53851991--53852039	23	2.1	23	100	0	98	67	0	0	32	0.91
53851991--53852048	23	2.5	23	91	0	80	67	0	1	31	1.01
53856980--53857102	60	2.1	60	83	4	151	27	18	12	41	1.86
53858823--53858849	4	6.8	4	100	0	54	22	0	0	77	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228