genome.fa.s23.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  146  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43925107--43925146	20	2.0	20	100	0	80	30	10	15	45	1.78
43925235--43925277	20	2.2	20	86	0	59	46	4	2	46	1.36
43925322--43925379	22	2.5	25	78	18	63	62	5	0	32	1.18
43927279--43927315	12	3.2	12	84	7	58	43	0	56	0	0.99
43927281--43927315	17	2.1	17	94	0	61	42	0	57	0	0.99
43927281--43927314	6	5.8	6	89	6	52	44	0	55	0	0.99
43928756--43928900	49	2.9	49	82	6	184	22	27	20	28	1.99
43936527--43936633	50	2.1	50	82	3	135	21	31	19	27	1.97
43952006--43952183	27	6.6	27	85	3	214	26	14	28	30	1.95
43952007--43952162	82	1.9	81	89	3	242	26	14	28	30	1.95
43952003--43952183	82	2.2	81	84	2	238	27	14	27	30	1.95
43970772--43970822	20	2.5	20	84	6	59	25	15	19	39	1.91
43972805--43972890	6	14.3	6	87	0	109	2	5	47	44	1.39
43972805--43972890	4	21.5	4	90	0	109	2	5	47	44	1.39
43972805--43972890	10	8.6	10	88	0	109	2	5	47	44	1.39
43980669--43980714	24	1.9	24	86	0	65	45	17	26	10	1.81
43982967--43983004	9	4.0	10	86	13	53	84	10	5	0	0.77
43982971--43983015	8	5.5	8	84	12	56	88	8	2	0	0.58
43982968--43983010	18	2.4	18	92	3	70	88	9	2	0	0.60
43982970--43983015	10	4.7	10	89	2	58	89	8	2	0	0.57
43984577--43984703	43	2.9	44	70	16	111	27	22	24	25	2.00
43984697--43985340	132	4.9	132	91	1	947	28	17	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43984943--43985256	44	7.1	44	66	7	109	26	18	24	29	1.98
43985116--43985301	44	4.2	45	67	8	105	25	19	24	31	1.98
44015287--44015529	103	2.4	102	89	6	361	39	4	10	45	1.57
44015270--44015529	104	2.5	102	87	7	368	40	4	10	45	1.58
44016839--44016868	14	2.1	14	100	0	60	56	6	13	23	1.60
44020432--44020470	20	2.0	20	89	0	60	28	30	0	41	1.57
44032431--44032490	30	2.0	30	90	0	93	35	11	20	33	1.88
44041137--44041162	5	5.2	5	100	0	52	0	38	0	61	0.96
44041509--44041566	30	1.9	31	85	3	82	31	20	3	44	1.68
44041731--44041774	23	1.9	23	95	0	79	27	0	25	47	1.52
44041793--44042174	42	9.1	42	87	1	516	21	18	22	37	1.94
44043355--44043399	20	2.2	20	84	7	56	48	8	8	33	1.65
44044652--44044828	94	1.9	93	84	11	238	40	3	10	45	1.56
44044469--44044778	144	2.2	144	84	6	400	45	3	9	41	1.53
44044744--44044789	20	2.2	21	84	3	58	39	0	10	50	1.38
44044743--44044790	21	2.3	22	78	10	55	37	0	10	52	1.36
44044678--44044878	94	2.1	94	79	7	221	44	3	10	40	1.57
44047150--44047207	27	2.1	27	87	0	80	43	20	18	17	1.89
44053874--44054068	98	2.0	98	93	0	336	17	11	13	56	1.66
44056042--44056074	5	6.8	5	96	3	59	42	0	0	57	0.98
44056124--44056154	15	2.0	16	93	6	55	67	0	32	0	0.91
44058762--44058808	24	2.0	23	83	4	58	55	2	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44062601--44062626	8	3.2	8	100	0	52	61	0	11	26	1.30
44067582--44067772	26	7.3	26	85	1	240	41	20	13	24	1.88
44068135--44068218	33	2.8	28	70	16	69	21	20	22	35	1.96
44068144--44068239	33	2.9	32	86	6	120	20	19	21	37	1.94
44072922--44072957	18	2.0	18	94	0	63	22	13	11	52	1.72
44072929--44072964	18	2.1	18	89	5	56	22	22	11	44	1.84
44073536--44073562	10	2.7	10	100	0	54	40	14	0	44	1.46
44074132--44074157	8	3.2	8	100	0	52	26	0	34	38	1.57
44075975--44076007	13	2.6	13	90	4	50	63	0	3	33	1.10
44076957--44077066	40	2.7	42	83	6	129	25	24	18	31	1.97
44079474--44079512	20	2.0	20	85	5	53	25	2	0	71	0.98
44092018--44092046	13	2.2	13	100	0	58	41	41	0	17	1.49
44092187--44092263	9	8.4	9	83	8	93	23	10	25	40	1.86
44092423--44092447	12	2.1	12	100	0	50	16	24	36	24	1.94
44092779--44092831	22	2.3	23	78	12	56	50	3	9	35	1.53
44097515--44097545	14	2.2	14	100	0	62	48	16	22	12	1.80
44098295--44098348	21	2.6	21	85	5	74	22	22	33	22	1.97
44101431--44101523	37	2.5	38	82	10	120	35	40	8	15	1.77
44101997--44102038	21	2.0	21	81	9	50	26	14	35	23	1.93
44102021--44102069	21	2.3	21	82	0	62	28	20	30	20	1.98
44105466--44105649	40	4.6	40	83	6	205	23	21	27	27	1.99
44105466--44105646	80	2.3	81	84	9	230	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44107417--44107455	18	2.1	18	85	4	51	64	0	17	17	1.30
44115393--44115463	37	1.9	37	100	0	142	21	7	19	52	1.70
44122810--44123188	47	8.1	47	92	0	589	32	9	29	28	1.88
44123307--44123385	37	2.1	37	86	4	106	25	17	30	26	1.97
44125685--44125937	27	9.4	27	77	6	219	43	17	18	19	1.88
44125695--44125935	81	3.0	81	83	2	279	43	18	18	19	1.88
44126288--44126350	28	2.3	28	86	2	83	19	22	25	33	1.97
44129323--44129384	28	2.2	28	80	2	72	35	24	19	20	1.96
44129726--44129905	27	6.7	27	78	6	177	16	18	20	44	1.87
44129736--44129905	54	3.2	54	80	6	202	16	18	19	45	1.85
44132888--44132932	21	2.1	21	95	0	81	37	35	8	17	1.81
44132893--44132940	21	2.5	19	83	10	62	41	33	8	16	1.78
44149096--44149147	25	2.1	25	92	0	86	15	36	30	17	1.91
44150167--44150329	35	4.6	35	80	3	148	39	31	11	17	1.85
44162785--44162819	13	2.7	13	90	0	52	22	40	22	14	1.90
44170142--44170365	44	4.8	44	69	11	151	27	25	21	25	2.00
44170010--44170427	143	2.9	143	88	0	611	27	22	21	28	1.99
44172183--44172308	1	126.0	1	65	0	54	2	3	11	82	0.88
44172185--44172308	31	4.0	32	81	12	125	2	3	12	82	0.89
44172190--44172308	35	3.1	38	82	12	156	1	3	12	82	0.87
44172193--44172313	49	2.4	49	81	10	140	1	4	12	80	0.93
44172190--44172300	7	15.9	7	80	10	129	1	3	12	81	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44180437--44180468	12	2.4	14	90	10	50	12	0	37	50	1.41
44183694--44183722	14	2.1	14	93	6	51	62	3	20	13	1.46
44184779--44184839	27	2.3	27	82	5	70	37	14	22	24	1.92
44188829--44188870	13	3.0	14	82	6	50	45	7	4	42	1.52
44195648--44195673	12	2.2	12	100	0	52	34	7	15	42	1.75
44195660--44195729	20	3.4	20	81	14	88	35	8	15	40	1.78
44195665--44195732	22	3.2	22	80	12	79	36	7	17	38	1.78
44195996--44196066	20	3.5	20	67	22	58	23	2	4	69	1.20
44196047--44196085	3	13.0	3	83	0	51	33	2	0	64	1.08
44196220--44196254	17	2.1	17	94	0	61	37	11	0	51	1.38
44196331--44196379	19	2.7	18	80	20	50	38	6	0	55	1.25
44196392--44196475	32	2.7	32	78	12	93	35	2	3	58	1.28
44196437--44196478	21	2.0	21	90	0	66	40	2	4	52	1.35
44201657--44202192	44	12.2	44	75	6	458	27	15	26	30	1.96
44201640--44202192	132	4.2	132	91	2	876	27	15	26	30	1.96
44201640--44202192	265	2.1	264	91	1	876	27	15	26	30	1.96
44202173--44202402	88	2.6	88	88	0	334	27	29	23	19	1.98
44201729--44202306	265	2.2	262	82	5	610	28	17	25	28	1.98
44202187--44202435	88	2.8	88	84	1	248	27	29	23	19	1.98
44202402--44202611	44	4.8	44	84	3	271	25	16	27	30	1.96
44203403--44203447	23	2.0	23	86	4	65	37	6	17	37	1.76
44203718--44203747	7	4.4	7	95	4	53	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44203722--44203818	3	33.0	3	74	12	67	32	2	3	61	1.23
44203718--44203817	14	7.4	13	68	23	55	32	2	3	63	1.21
44203948--44203991	17	2.6	17	85	3	63	40	11	0	47	1.39
44204004--44204105	39	2.6	38	72	7	96	31	3	5	58	1.40
44204151--44204207	30	1.9	30	89	7	89	35	3	3	57	1.33
44212114--44212139	12	2.2	12	100	0	52	50	26	7	15	1.71
44216011--44216341	170	2.0	167	83	5	423	35	16	16	32	1.90
44227462--44227510	21	2.3	21	86	6	64	2	18	2	77	0.96
44227465--44227498	15	2.3	15	89	0	50	0	17	0	82	0.67
44227496--44227534	6	6.7	6	85	2	53	12	5	12	69	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228