genome.fa.s23.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  112  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32598342--32598403	25	2.4	25	81	5	70	80	4	8	6	1.01
32599053--32599094	21	2.0	21	90	0	66	52	0	0	47	1.00
32601194--32601262	26	2.7	24	78	12	66	55	8	4	31	1.50
32605021--32605064	18	2.4	18	92	0	70	18	6	50	25	1.71
32607588--32607661	33	2.2	33	92	0	121	45	4	2	47	1.35
32607713--32607752	13	2.9	13	82	13	53	57	0	0	42	0.98
32607785--32607841	15	3.5	15	76	17	60	49	1	3	45	1.29
32608583--32608608	13	2.0	13	100	0	52	15	7	0	76	0.99
32629385--32629759	84	4.2	91	83	10	429	36	17	7	38	1.78
32629569--32629790	89	2.6	87	81	9	197	37	17	9	35	1.83
32629894--32629946	9	6.0	9	80	12	56	67	1	3	26	1.17
32629908--32630026	20	6.3	19	68	12	59	66	3	2	27	1.20
32629903--32629992	28	3.2	27	78	10	92	66	3	1	28	1.14
32629929--32630009	30	2.7	29	73	19	69	67	2	1	28	1.11
32630308--32630469	9	17.4	9	69	16	73	30	3	1	64	1.19
32630296--32630336	20	2.0	20	90	9	66	24	2	4	68	1.22
32630389--32630444	20	2.7	21	78	13	71	41	0	0	58	0.98
32630389--32630444	21	2.7	22	81	10	64	41	0	0	58	0.98
32632429--32632461	17	1.9	17	93	0	57	51	0	18	30	1.46
32634175--32634472	69	4.3	66	81	7	202	43	21	11	23	1.85
32634175--32634472	35	8.7	34	78	5	287	43	21	11	23	1.85
32634244--32634472	69	3.3	69	88	0	343	44	20	10	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32634853--32634885	17	1.9	17	88	11	50	6	36	12	45	1.66
32634993--32635024	15	2.1	15	94	0	55	25	21	6	46	1.74
32636138--32636570	43	10.1	43	76	4	277	41	22	14	22	1.89
32636138--32636570	86	5.1	85	79	3	395	41	22	14	22	1.89
32636140--32636409	129	2.1	128	82	3	328	40	23	14	21	1.90
32642491--32642531	21	2.0	21	81	18	50	31	19	26	21	1.97
32653520--32653562	15	3.1	13	84	15	59	60	13	9	16	1.58
32657925--32657988	24	2.7	22	77	13	74	62	4	0	32	1.16
32662459--32662502	23	1.9	23	90	0	70	15	15	29	38	1.89
32662458--32662509	23	2.3	22	83	9	68	13	15	30	40	1.86
32668263--32668315	25	2.0	27	82	7	65	28	16	5	49	1.69
32675302--32675341	17	2.4	17	82	0	53	57	0	2	40	1.12
32675587--32675631	21	2.1	21	83	0	54	31	26	0	42	1.56
32675560--32675614	16	3.4	16	82	5	67	36	23	3	36	1.73
32680373--32680466	27	3.5	27	81	5	109	37	10	21	30	1.87
32680361--32680466	54	2.0	54	84	0	140	37	11	22	28	1.89
32683036--32683282	39	6.3	39	83	2	291	34	19	29	16	1.94
32683070--32683131	19	3.2	19	72	4	70	35	20	30	12	1.91
32683054--32683272	117	1.9	117	87	1	323	32	18	31	17	1.94
32690369--32690431	20	3.2	20	69	13	67	23	33	12	30	1.92
32690329--32690567	39	6.1	39	83	0	289	19	29	17	33	1.94
32690365--32690499	19	6.9	20	64	13	66	19	30	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32691764--32691813	26	1.9	26	95	0	91	30	16	6	48	1.70
32692210--32692357	75	2.0	75	90	2	235	46	10	13	29	1.77
32692336--32692746	128	3.1	134	80	9	437	40	7	6	44	1.60
32694644--32694682	12	3.2	12	92	7	62	15	38	17	28	1.91
32701532--32701891	183	2.0	183	94	0	630	22	27	19	30	1.98
32713886--32713924	17	2.2	18	86	13	55	53	7	7	30	1.57
32714633--32714788	28	5.6	28	80	4	163	26	13	23	36	1.92
32714625--32714787	55	2.9	55	82	5	186	27	13	23	35	1.92
32714633--32714788	83	1.9	84	86	6	228	26	13	23	36	1.92
32719480--32719525	24	1.9	24	82	8	58	54	13	10	21	1.69
32732931--32732967	19	1.9	19	88	0	56	64	0	8	27	1.21
32738364--32738425	26	2.4	26	94	2	108	33	3	25	37	1.72
32748228--32748271	21	2.0	22	86	4	63	20	6	40	31	1.79
32748242--32748271	11	2.7	11	89	0	51	23	3	46	26	1.68
32759730--32759772	22	2.0	22	95	0	77	34	25	9	30	1.87
32760450--32760499	22	2.3	22	82	0	55	28	14	4	54	1.58
32767412--32767867	110	4.2	109	85	3	603	31	13	22	32	1.92
32772843--32773034	50	3.8	50	86	2	269	27	22	28	21	1.99
32772848--32773073	50	4.5	50	84	1	204	28	22	26	22	1.99
32775029--32775107	37	2.1	37	90	0	122	25	31	18	24	1.98
32775226--32775905	47	14.4	47	87	7	878	28	29	8	33	1.87
32775460--32775905	98	4.6	96	87	7	657	30	28	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32775447--32775905	145	3.2	141	89	6	684	29	28	8	32	1.88
32780597--32780956	20	18.0	19	66	11	141	36	17	28	17	1.93
32780669--32780956	40	7.2	39	86	6	364	36	17	28	18	1.93
32780629--32780956	120	2.7	120	83	5	421	36	17	28	17	1.93
32783937--32783981	23	1.9	23	81	4	54	57	6	2	33	1.37
32791270--32791309	18	2.2	18	86	0	53	65	2	25	7	1.32
32792895--32792931	19	1.9	19	89	10	58	40	29	13	16	1.86
32801379--32801424	22	2.2	22	92	7	78	17	34	13	34	1.88
32801396--32801535	29	4.8	29	78	5	122	27	27	10	35	1.90
32803042--32803082	21	2.0	21	95	0	73	51	9	12	26	1.70
32807400--32807682	140	2.0	140	97	0	530	34	13	13	38	1.84
32811036--32811172	41	3.4	41	87	1	186	18	20	29	32	1.96
32811585--32811613	14	2.0	15	93	6	51	31	0	34	34	1.58
32811648--32811678	14	2.2	14	94	0	53	35	0	29	35	1.58
32811830--32811875	21	2.2	21	84	7	58	17	2	45	34	1.61
32813196--32813233	16	2.3	17	95	4	69	2	13	21	63	1.42
32816847--32816902	27	2.1	27	83	6	69	26	8	1	62	1.35
32817090--32817314	43	5.3	42	79	9	190	24	16	30	29	1.96
32817083--32817298	86	2.5	84	82	5	245	25	15	30	29	1.96
32817114--32817314	43	4.7	43	81	5	205	24	16	29	28	1.97
32823491--32823571	20	4.0	19	78	10	81	53	12	14	19	1.73
32825618--32825657	16	2.5	16	91	0	62	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32825646--32825788	68	2.1	67	94	2	261	41	4	9	45	1.55
32825730--32825757	9	3.1	9	100	0	56	32	0	10	57	1.33
32830642--32830704	26	2.4	26	86	2	90	52	0	1	46	1.10
32832629--32832665	20	2.0	20	84	10	51	0	13	2	83	0.74
32833696--32833738	10	4.2	10	80	13	52	72	0	6	20	1.08
32833709--32833765	17	3.3	17	80	7	62	77	0	5	17	0.95
32833704--32833765	12	5.4	12	81	14	53	77	0	4	17	0.94
32834339--32834377	19	2.1	19	95	0	69	38	17	15	28	1.91
32838439--32838479	22	2.0	20	90	9	64	21	14	19	43	1.87
32843384--32843441	22	2.7	21	82	12	64	29	20	17	32	1.95
32843964--32844096	68	2.0	68	84	3	178	43	3	9	44	1.51
32848180--32848955	386	2.0	386	100	0	1552	35	17	15	31	1.91
32861278--32861326	21	2.3	22	82	7	64	34	6	4	55	1.44
32861289--32861333	21	2.1	21	87	0	63	35	6	4	53	1.47
32864315--32864374	30	2.0	29	87	3	84	41	0	3	55	1.16
32864741--32864821	35	2.4	32	84	15	101	43	0	1	55	1.07
32864750--32864796	8	5.5	8	77	22	51	46	0	0	53	1.00
32864863--32864897	18	1.9	17	88	11	52	42	5	0	51	1.25
32869298--32869344	16	3.0	16	78	9	53	48	2	6	42	1.40
32878077--32878138	24	2.6	24	86	0	79	25	32	24	17	1.97
32878610--32878636	14	1.9	14	100	0	54	29	3	14	51	1.60
32894999--32895231	122	1.9	119	79	11	260	40	5	11	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32895324--32895353	12	2.6	11	94	5	51	76	0	23	0	0.78
32896485--32896595	23	5.0	23	83	7	124	19	18	25	36	1.95
32902476--32902547	21	3.4	21	80	5	65	18	20	22	38	1.93
32902489--32902547	21	2.9	21	82	2	75	16	22	23	37	1.94
32906559--32906664	28	3.8	28	83	2	142	34	12	23	29	1.91
32909943--32909994	25	2.1	25	85	0	68	48	15	15	21	1.81
32910904--32911347	50	8.9	50	90	0	622	21	29	21	27	1.98
32918549--32918586	18	2.1	18	95	0	67	28	13	31	26	1.93
32925066--32925096	6	5.2	6	100	0	62	16	16	0	67	1.23
32935703--32935936	129	1.8	126	80	8	276	38	5	8	48	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228