genome.fa.s23.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  136  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40736429--40736484	26	2.2	26	86	0	76	14	21	30	33	1.93
40736473--40736567	32	3.0	31	81	6	102	24	21	15	38	1.92
40745755--40745794	20	2.0	21	90	5	64	25	0	17	57	1.40
40745756--40745799	20	2.2	20	84	8	54	25	0	18	56	1.41
40746278--40746347	29	2.5	28	83	4	95	28	0	17	54	1.43
40746285--40746345	29	2.1	29	93	0	104	26	0	16	57	1.39
40755303--40755345	19	2.3	19	96	4	79	39	13	4	41	1.66
40756098--40756127	12	2.5	12	88	0	51	6	23	40	30	1.80
40762559--40762614	16	3.5	16	92	0	85	41	3	33	21	1.70
40762593--40762731	46	3.1	46	93	2	237	28	5	29	36	1.78
40766737--40766830	45	2.1	45	91	0	152	31	24	18	25	1.97
40766827--40767022	51	3.9	50	78	4	205	30	28	16	24	1.97
40766832--40767018	101	1.8	101	86	3	241	31	27	16	24	1.96
40769561--40769594	16	2.1	17	88	5	52	41	20	0	38	1.53
40771882--40772066	101	1.8	102	85	3	266	25	16	25	31	1.96
40771882--40772015	50	2.7	50	82	3	162	25	19	24	30	1.98
40771878--40772064	51	3.7	51	78	5	191	26	16	25	31	1.96
40772075--40772163	45	2.0	45	93	0	151	25	17	23	32	1.97
40775170--40775267	49	2.0	50	83	2	126	23	13	28	34	1.92
40777796--40777939	51	2.8	51	81	2	173	25	18	25	31	1.97
40777934--40778024	45	2.0	45	91	0	146	27	17	23	31	1.97
40796661--40796764	46	2.3	46	86	3	138	37	20	15	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40796661--40796806	46	3.2	46	80	7	136	34	20	17	27	1.95
40798936--40799082	40	3.7	40	79	1	161	31	19	15	32	1.93
40799406--40799441	18	1.9	19	88	5	56	44	2	19	33	1.65
40808159--40808197	2	19.5	2	94	0	69	0	0	46	53	1.00
40809904--40810046	50	2.8	50	80	4	171	22	18	28	30	1.97
40809899--40810075	51	3.5	50	79	4	212	23	16	28	32	1.96
40816783--40816830	25	1.9	25	95	0	87	22	25	16	35	1.95
40819680--40819718	17	2.3	17	90	0	60	35	20	5	38	1.75
40825887--40825936	26	1.9	26	83	0	64	30	24	12	34	1.91
40833174--40833202	13	2.1	14	93	6	51	34	20	0	44	1.52
40839457--40840927	502	3.0	502	94	1	2542	34	21	15	29	1.94
40843821--40843860	20	2.0	20	85	0	53	72	5	10	12	1.26
40850062--40850153	37	2.5	37	83	1	114	17	16	26	40	1.90
40862063--40862107	19	2.4	19	96	3	83	46	8	15	28	1.76
40866511--40866576	34	1.9	34	90	0	105	42	12	7	37	1.71
40867730--40867766	17	2.2	17	90	9	58	10	16	2	70	1.27
40876046--40876097	18	2.8	18	82	8	59	30	5	0	63	1.18
40876102--40876144	18	2.4	17	81	11	50	46	2	2	48	1.27
40876106--40876150	19	2.3	20	81	14	58	40	2	4	53	1.33
40876305--40876339	18	1.9	18	100	0	70	51	11	17	20	1.75
40878753--40878788	4	8.8	4	87	6	54	50	0	0	50	1.00
40889626--40889723	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40889654--40889736	27	3.0	27	87	5	96	30	12	25	32	1.92
40889626--40889737	28	4.0	27	83	6	98	28	12	25	33	1.92
40901549--40901717	31	5.3	31	66	12	92	42	7	3	47	1.48
40906748--40906919	51	3.4	50	80	7	163	41	12	14	31	1.83
40906810--40906906	50	1.9	51	91	2	160	40	13	15	30	1.86
40906895--40906986	33	2.8	34	79	12	95	45	11	14	28	1.80
40907749--40907913	46	3.6	46	86	4	219	42	16	19	21	1.89
40907882--40908096	45	4.8	45	93	1	326	34	18	22	24	1.96
40908020--40908222	45	4.5	45	80	7	178	42	16	21	19	1.89
40907882--40908144	90	2.9	90	85	3	253	36	18	22	22	1.95
40907882--40908129	135	1.8	135	83	5	331	36	18	22	22	1.95
40916158--40916290	72	1.9	71	90	1	212	23	18	23	35	1.96
40918308--40918360	27	1.9	28	85	11	74	66	9	5	18	1.41
40918304--40918349	12	3.5	13	78	16	51	69	6	2	21	1.22
40918555--40918615	9	6.7	9	74	14	54	80	3	3	13	0.96
40920004--40920040	17	2.2	17	90	0	56	16	0	10	72	1.10
40920149--40920651	44	11.2	44	70	11	232	30	21	17	30	1.96
40920196--40920432	89	2.6	88	79	7	244	29	19	18	32	1.96
40920165--40920651	45	10.8	45	71	12	158	30	22	16	30	1.96
40920253--40920607	136	2.6	136	85	1	487	30	21	16	31	1.95
40920435--40920743	92	3.4	91	72	11	290	32	22	15	30	1.94
40920393--40920802	181	2.3	181	88	0	597	32	21	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40920409--40920693	85	3.2	84	71	12	255	33	21	16	28	1.95
40921739--40921789	16	3.2	15	81	10	57	1	11	1	84	0.79
40921739--40921788	22	2.2	23	86	10	68	2	12	2	84	0.80
40921739--40921781	21	2.0	23	90	9	72	0	11	2	86	0.67
40921878--40921910	14	2.3	15	89	5	50	27	33	12	27	1.92
40924693--40924792	43	2.3	43	77	13	107	22	22	25	31	1.98
40925775--40926045	23	11.7	23	82	2	310	26	12	20	40	1.88
40934348--40934380	3	11.0	3	93	0	57	63	0	3	33	1.10
40934543--40934593	3	17.3	3	76	11	52	72	0	1	25	0.95
40934540--40934632	23	4.2	22	78	17	86	72	3	1	23	1.06
40934543--40934632	29	3.2	27	79	16	94	72	3	1	23	1.06
40934588--40934635	19	2.6	18	83	9	69	70	10	0	18	1.15
40935316--40935352	19	1.9	19	100	0	74	29	10	27	32	1.90
40938232--40938283	11	4.3	11	73	21	50	73	1	1	23	1.04
40939756--40939800	23	2.0	23	91	8	74	48	13	11	26	1.75
40941759--40941814	24	2.3	24	96	0	103	35	21	26	16	1.94
40941759--40941836	24	3.2	24	85	7	86	34	23	25	16	1.95
40950835--40950877	20	2.2	20	86	0	59	53	2	30	13	1.53
40961354--40961402	22	2.4	22	80	10	59	22	8	10	59	1.56
40969914--40969971	20	2.9	20	87	5	73	22	27	0	50	1.50
40978319--40978375	25	2.3	23	78	18	62	42	0	5	52	1.24
40981104--40981331	124	1.8	124	93	0	395	26	19	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40981508--40981600	33	2.9	32	76	10	91	47	12	2	37	1.54
40981616--40981709	41	2.2	42	83	3	118	44	29	1	24	1.61
40982043--40982212	86	2.0	85	97	1	322	41	11	10	37	1.75
40982373--40982539	86	1.9	86	97	0	316	41	10	11	37	1.75
40985843--40985892	6	8.3	6	82	8	57	2	18	2	78	0.95
40985817--40985886	31	2.3	30	83	9	81	1	25	2	70	1.10
41000179--41000411	50	4.7	50	83	1	279	21	31	21	25	1.98
41000429--41000524	44	2.2	44	96	1	174	25	21	12	40	1.88
41004561--41004587	12	2.2	12	100	0	54	44	22	0	33	1.53
41006612--41006902	150	1.9	150	82	4	363	20	30	20	27	1.98
41006604--41006902	50	6.0	50	84	3	325	21	30	21	27	1.98
41011236--41011646	47	8.7	47	94	0	644	32	8	29	29	1.87
41016494--41016524	4	7.8	4	92	0	53	22	3	0	74	0.96
41019674--41019723	25	2.0	25	100	0	100	44	24	16	16	1.86
41022012--41022053	18	2.3	18	100	0	84	26	19	14	40	1.89
41024492--41024555	27	2.4	26	75	12	67	23	23	12	40	1.88
41024492--41024557	26	2.5	27	76	11	73	22	22	12	42	1.87
41026429--41026488	22	2.7	22	79	5	59	43	13	21	21	1.87
41026490--41026587	32	3.1	31	77	4	97	38	18	22	20	1.93
41026599--41026652	26	2.1	26	82	6	65	40	20	18	20	1.91
41026778--41026854	24	3.2	24	86	0	100	49	24	6	19	1.72
41026816--41026887	24	3.0	23	81	4	81	45	23	5	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41026872--41026924	26	2.0	26	85	3	70	33	22	18	24	1.97
41026871--41026936	26	2.5	26	77	0	69	33	22	15	28	1.94
41029585--41029996	131	3.1	130	83	4	504	33	15	13	37	1.86
41033077--41033196	60	2.0	60	85	3	161	34	24	15	25	1.95
41038485--41038534	19	2.4	22	83	12	70	20	6	8	66	1.40
41040702--41040740	19	2.1	19	85	9	53	51	5	5	38	1.46
41041441--41041476	18	2.1	18	89	5	56	50	0	0	50	1.00
41044851--41044880	13	2.3	13	94	0	51	6	10	16	66	1.41
41046468--41046519	18	2.9	18	72	18	54	25	7	38	28	1.83
41047476--41047695	102	2.2	102	95	0	395	42	1	5	50	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228