genome.fa.s23.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  156  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46920883--46920961	37	2.1	37	88	4	115	25	30	18	25	1.98
46921080--46921600	47	11.1	47	95	0	871	28	29	9	32	1.88
46928407--46928703	65	4.6	65	77	8	264	42	11	16	29	1.83
46965133--46966227	367	3.0	366	94	0	1940	21	20	23	34	1.97
46974002--46974072	26	2.7	26	82	4	90	35	11	15	38	1.83
46981064--46981108	23	2.0	21	84	16	56	26	26	20	26	1.99
46986428--46986485	25	2.3	25	84	0	80	22	12	29	36	1.90
46986440--46986488	25	2.0	25	95	0	89	22	8	32	36	1.84
46989976--46990050	26	2.9	26	86	2	107	34	20	22	22	1.96
46992403--46992480	38	2.1	38	95	0	138	50	7	14	28	1.70
46992904--46992928	13	1.9	13	100	0	50	44	8	16	32	1.76
47007870--47007906	17	2.2	17	90	0	56	24	16	8	51	1.71
47010501--47010532	15	2.1	15	94	0	55	31	9	31	28	1.88
47012380--47012523	27	5.3	27	85	0	171	41	24	15	18	1.89
47014118--47014221	32	3.2	32	82	2	129	23	18	18	40	1.91
47014118--47014271	64	2.4	64	84	4	186	24	19	17	38	1.92
47014277--47014350	22	3.3	21	72	12	60	16	20	20	43	1.88
47023216--47023260	18	2.5	18	89	7	65	35	13	15	35	1.87
47023379--47023515	69	2.0	69	91	0	220	18	13	38	28	1.90
47023483--47023521	18	2.0	20	85	14	55	12	15	46	25	1.81
47023494--47023536	18	2.4	18	84	7	52	13	16	46	23	1.83
47031133--47031201	18	3.8	18	84	5	86	60	2	2	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47031129--47031201	10	7.8	10	71	22	52	60	2	2	34	1.25
47033766--47033882	23	4.9	23	77	7	90	25	14	10	49	1.75
47033775--47033874	12	8.2	12	71	6	76	28	14	12	46	1.79
47033803--47033852	26	1.9	26	83	0	64	28	14	12	46	1.79
47040974--47041026	22	2.5	21	84	9	63	26	37	0	35	1.57
47044120--47044164	23	2.0	22	87	12	65	22	15	11	51	1.75
47044122--47044220	12	8.2	12	70	12	69	27	15	12	45	1.81
47044149--47044198	26	1.9	26	83	0	64	26	14	12	48	1.78
47044180--47044225	23	2.0	24	91	4	76	30	17	10	41	1.84
47053481--47053655	63	2.8	61	79	2	188	23	22	27	26	1.99
47054901--47054941	16	2.6	16	88	3	57	24	17	2	56	1.53
47055323--47055436	57	2.0	57	100	0	228	47	10	1	40	1.48
47055873--47055978	39	2.7	40	76	5	108	42	19	18	18	1.90
47056045--47056358	41	7.8	40	76	10	214	21	19	26	33	1.97
47056082--47056146	33	2.0	33	93	0	112	15	18	33	32	1.92
47056114--47056357	82	3.0	81	80	4	256	20	19	26	34	1.96
47056530--47056589	7	8.7	7	75	10	52	16	0	38	45	1.48
47056661--47056701	21	2.0	21	85	0	55	21	0	24	53	1.46
47056710--47056764	14	3.9	14	75	2	56	14	0	34	50	1.43
47057074--47057106	14	2.4	14	95	5	59	48	0	0	51	1.00
47058139--47058218	31	2.6	31	95	0	142	18	15	21	45	1.86
47059048--47059075	12	2.3	12	100	0	56	32	7	10	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47059194--47059218	10	2.5	10	100	0	50	16	0	8	76	1.02
47060406--47060503	43	2.3	43	87	0	133	23	15	30	30	1.95
47064781--47065053	41	6.7	41	88	2	397	17	20	29	32	1.96
47064800--47065053	122	2.1	123	91	2	413	17	21	29	30	1.96
47065376--47065432	22	2.6	23	81	10	57	24	1	29	43	1.64
47065397--47065485	7	12.6	7	71	2	52	22	3	28	46	1.68
47065404--47065487	35	2.4	36	83	2	98	22	3	28	45	1.69
47065445--47065547	14	6.9	14	73	12	71	24	0	37	36	1.62
47065514--47065560	21	2.2	22	88	3	69	21	0	46	31	1.51
47065440--47065577	7	19.7	7	67	14	61	24	0	36	38	1.61
47065901--47065941	21	1.9	22	90	5	66	19	0	41	39	1.52
47072523--47072689	86	1.9	86	83	4	212	23	18	29	28	1.98
47072570--47072751	86	2.1	85	82	1	211	23	19	29	28	1.98
47072527--47072747	43	5.2	43	75	4	162	23	18	29	28	1.98
47079993--47080059	12	5.6	12	74	0	53	43	11	1	43	1.50
47080005--47080063	28	2.1	28	87	0	91	42	11	0	45	1.41
47084897--47084959	25	2.5	24	80	17	74	73	1	23	1	1.01
47086178--47086550	132	2.8	132	86	1	498	31	21	20	26	1.98
47086331--47086544	44	4.9	44	71	6	164	32	18	23	25	1.97
47086537--47087048	50	10.3	50	73	5	340	31	23	20	24	1.98
47086532--47086949	100	4.2	99	87	1	595	30	23	20	24	1.98
47086532--47086998	100	4.7	100	85	2	546	31	23	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47087088--47087200	44	2.5	45	81	8	122	28	16	23	31	1.96
47087384--47087547	47	3.6	45	81	4	186	29	21	22	25	1.99
47089357--47089423	12	5.6	12	74	0	53	43	11	1	43	1.50
47092654--47092715	22	2.7	22	90	5	88	50	1	1	46	1.20
47092689--47092745	16	3.6	16	92	0	96	45	3	5	45	1.43
47093198--47093259	27	2.3	27	88	5	90	22	1	4	70	1.14
47093197--47093265	27	2.5	26	82	13	86	23	1	4	71	1.12
47093254--47093288	16	2.2	16	89	0	52	40	0	0	60	0.97
47094950--47095017	9	7.4	9	80	9	66	42	25	8	23	1.82
47095157--47095186	13	2.3	13	94	0	51	20	0	40	40	1.52
47096010--47096048	20	2.1	18	85	9	51	48	0	2	48	1.15
47096066--47096124	30	2.0	30	83	12	77	45	1	0	52	1.10
47096295--47096352	13	4.5	13	76	8	64	34	24	5	36	1.78
47096307--47096357	26	2.0	26	92	0	84	33	27	3	35	1.75
47096431--47096496	33	1.9	35	88	11	102	37	3	0	59	1.13
47096812--47096854	22	2.0	22	95	0	77	9	20	27	41	1.83
47096992--47097131	43	3.3	43	85	4	174	27	32	18	22	1.97
47097057--47097174	43	2.7	43	81	1	119	32	26	17	23	1.97
47097268--47097318	16	2.9	17	80	11	50	68	3	0	27	1.07
47097265--47097318	9	6.2	9	75	14	51	68	3	0	27	1.06
47097481--47097593	21	5.4	21	85	0	109	4	40	17	37	1.70
47097569--47097729	66	2.4	66	83	4	200	13	27	18	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47103187--47103291	25	4.2	25	78	11	115	32	1	19	46	1.60
47103198--47103448	9	28.8	9	70	12	157	31	2	20	45	1.65
47103190--47103289	51	2.0	50	86	2	137	32	2	20	46	1.62
47103471--47103514	16	2.7	16	96	3	79	38	0	22	38	1.55
47103700--47104305	100	6.1	100	97	0	1108	48	3	7	39	1.50
47104712--47104798	7	12.3	7	82	2	111	71	12	12	3	1.27
47105595--47105619	10	2.5	10	100	0	50	32	8	12	48	1.69
47106067--47106478	198	2.1	198	89	2	641	33	19	17	29	1.95
47106868--47106959	47	2.0	47	84	0	121	46	3	7	42	1.48
47106947--47106995	19	2.6	19	81	12	66	14	4	2	79	0.97
47106955--47106995	18	2.3	18	91	4	66	12	4	0	82	0.81
47107032--47107058	14	1.9	14	100	0	54	44	7	0	48	1.31
47107193--47107228	7	5.3	7	90	6	56	36	50	0	13	1.43
47107267--47107387	21	5.9	20	75	12	93	33	42	0	23	1.60
47107294--47107387	7	13.4	7	80	4	73	31	43	1	23	1.61
47107443--47107496	7	7.7	7	91	0	90	33	51	0	14	1.43
47107445--47107503	14	4.2	14	88	0	82	35	47	0	16	1.47
47107443--47107503	21	2.9	21	97	0	113	34	49	0	16	1.46
47107192--47107499	158	1.9	158	83	6	401	38	36	0	24	1.60
47108038--47108177	74	1.9	75	85	7	196	29	22	17	30	1.97
47107912--47108306	188	2.1	188	90	0	619	30	22	15	31	1.94
47108112--47108690	114	5.1	115	72	10	422	30	20	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47108096--47108690	227	2.6	226	87	3	804	30	20	15	33	1.94
47113866--47113919	16	3.4	16	92	0	81	35	0	33	31	1.58
47113898--47113988	45	2.0	44	85	2	119	32	5	27	34	1.80
47115840--47115878	20	2.0	20	100	0	78	30	25	17	25	1.97
47124092--47124142	25	2.0	25	88	7	77	62	1	3	31	1.24
47124563--47124610	24	2.0	24	83	4	60	27	0	6	66	1.15
47124560--47124620	25	2.3	26	83	10	72	27	1	4	65	1.22
47124843--47124874	8	4.1	8	92	8	57	25	0	0	75	0.81
47124844--47124874	15	2.1	15	100	0	62	25	0	0	74	0.82
47124847--47124883	15	2.5	15	90	0	56	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228