genome.fa.s23.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  120  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35451543--35452041	174	2.9	174	96	0	935	29	14	25	31	1.94
35453501--35453620	56	2.1	56	98	0	231	22	23	9	45	1.81
35461972--35462154	40	4.6	39	80	7	154	24	21	27	25	1.99
35467380--35468147	27	28.3	27	74	7	446	39	17	20	22	1.92
35467462--35468246	410	1.9	410	91	0	1284	37	17	20	24	1.93
35468297--35468396	26	3.8	26	80	9	89	19	22	22	37	1.95
35468503--35468594	28	3.2	28	84	7	121	26	26	20	27	1.99
35468514--35468594	30	2.8	29	87	7	112	24	27	22	25	2.00
35475331--35475550	27	8.1	27	90	1	307	44	20	18	15	1.87
35477497--35477549	28	1.9	27	84	3	70	16	9	7	66	1.43
35487621--35487661	2	20.5	2	100	0	82	0	51	0	48	1.00
35488129--35488165	19	1.9	19	94	0	65	35	0	2	62	1.10
35489189--35489414	43	5.3	43	80	3	226	26	27	17	27	1.98
35489199--35489357	86	1.9	86	90	1	257	24	28	16	30	1.97
35490748--35490796	22	2.2	22	100	0	98	40	12	12	34	1.80
35491704--35491912	106	2.0	101	88	6	312	24	12	12	49	1.76
35492049--35492196	75	2.0	76	91	1	244	29	12	11	46	1.77
35492988--35493029	14	2.9	14	82	6	57	35	35	0	28	1.58
35492984--35493032	15	3.4	15	83	8	66	38	32	0	28	1.57
35493541--35493755	113	1.9	113	93	1	369	27	27	21	23	1.99
35496647--35496764	60	2.0	59	96	1	218	33	0	13	53	1.40
35497017--35497057	20	2.0	21	85	9	57	70	2	0	26	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35497965--35498012	22	2.2	22	92	0	78	31	10	10	47	1.71
35503715--35503868	61	2.5	61	81	4	177	24	25	14	35	1.93
35503701--35503848	60	2.4	59	82	5	170	27	26	14	31	1.95
35507890--35507954	32	2.1	32	94	2	114	29	9	13	47	1.74
35508261--35508318	29	2.1	27	81	18	66	25	6	0	67	1.16
35508474--35508594	45	2.7	45	96	1	215	66	10	14	9	1.45
35514091--35514155	32	2.1	32	94	2	114	29	9	13	47	1.74
35516887--35516921	16	2.1	18	89	10	56	60	0	5	34	1.21
35520358--35520383	7	3.7	7	100	0	52	61	0	0	38	0.96
35520804--35520833	12	2.6	11	90	10	51	13	30	10	46	1.75
35528606--35528647	23	1.9	23	90	9	70	23	0	4	71	1.05
35530818--35530874	21	2.8	19	80	12	60	59	5	5	29	1.41
35530818--35530876	20	2.9	20	82	9	66	59	5	6	28	1.45
35533816--35533906	38	2.4	38	83	0	101	42	24	14	18	1.87
35540895--35540956	24	2.6	24	84	5	81	37	22	22	17	1.94
35547175--35547222	25	2.0	25	87	4	71	39	18	25	16	1.91
35548448--35548522	29	2.6	29	82	4	80	54	1	5	38	1.31
35548707--35548786	3	26.7	3	79	0	79	57	3	6	32	1.41
35548741--35548795	18	3.2	17	82	15	69	54	0	14	30	1.41
35549851--35549887	18	2.1	18	94	0	65	8	0	45	45	1.32
35550659--35550826	44	3.8	44	71	11	144	27	23	15	33	1.95
35550664--35550850	92	2.0	91	92	1	311	29	21	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35551193--35551527	46	7.3	46	90	2	530	31	25	16	25	1.96
35551477--35552213	174	4.2	174	85	5	814	25	24	23	27	2.00
35551477--35552213	88	8.4	87	85	4	801	25	24	23	27	2.00
35551772--35551907	44	3.1	43	71	14	127	25	25	25	23	2.00
35551992--35552123	43	3.1	43	63	16	110	24	22	23	29	1.99
35552993--35553312	102	3.0	104	90	4	482	49	8	16	25	1.74
35553584--35553676	5	19.0	5	81	16	99	0	17	0	82	0.66
35553578--35553681	20	5.2	20	86	13	137	0	17	0	82	0.66
35553592--35553693	45	2.3	43	83	16	102	0	14	1	83	0.74
35553578--35553673	21	4.7	19	83	13	86	0	16	0	83	0.65
35553587--35553694	1	108.0	1	66	0	54	0	14	1	83	0.73
35553791--35553827	18	2.1	18	94	0	65	8	0	45	45	1.32
35555544--35555568	4	6.2	4	100	0	50	24	0	0	76	0.80
35556710--35556734	12	2.1	12	100	0	50	40	8	24	28	1.83
35557096--35557131	18	2.0	18	88	0	54	33	0	2	63	1.08
35557848--35557971	62	2.0	62	96	0	230	28	10	13	47	1.76
35559284--35559326	19	2.2	19	83	8	50	55	0	0	44	0.99
35559314--35559349	19	1.9	18	88	5	54	61	0	2	36	1.11
35560344--35560407	26	2.5	27	75	22	66	39	0	1	59	1.07
35561922--35561967	22	2.1	22	84	11	60	32	0	2	65	1.05
35561912--35561994	29	2.9	29	79	13	91	39	0	2	57	1.12
35569616--35569652	18	2.1	18	100	0	74	27	10	5	56	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35573367--35573420	22	2.4	22	87	3	72	70	5	24	0	1.08
35573376--35573409	15	2.4	14	90	5	50	73	2	23	0	0.97
35580931--35581153	40	5.6	39	82	5	207	26	27	21	24	1.99
35580931--35581077	79	1.9	80	88	1	224	27	27	21	23	1.99
35580929--35581153	80	2.8	79	82	6	231	27	28	20	24	1.99
35580931--35581153	120	1.9	119	82	4	279	26	27	21	24	1.99
35585096--35585135	13	3.1	13	100	0	80	47	7	37	7	1.60
35592433--35592527	32	3.1	30	79	10	102	61	2	2	34	1.20
35592460--35592510	20	2.5	20	70	0	57	68	0	1	29	1.00
35592471--35592542	29	2.5	29	89	8	112	63	0	2	33	1.08
35592481--35592594	41	2.8	41	84	11	162	64	0	3	32	1.11
35599617--35599666	22	2.3	22	92	0	82	40	6	24	30	1.79
35605997--35606044	10	4.6	10	80	10	51	62	0	0	37	0.95
35614874--35614910	18	2.0	19	89	5	58	51	0	43	5	1.24
35623830--35623890	32	1.9	32	89	0	95	37	24	13	24	1.91
35623855--35624005	43	3.5	43	82	1	187	31	24	15	28	1.96
35623855--35624025	43	4.0	43	78	6	150	28	24	18	28	1.98
35624074--35624107	16	2.1	16	88	0	50	55	8	0	35	1.31
35625354--35625396	22	2.0	22	90	0	68	9	18	27	44	1.80
35625578--35625847	87	3.1	85	78	8	260	29	29	17	23	1.97
35625578--35625847	43	6.2	43	80	5	267	29	29	17	23	1.97
35626149--35626227	21	3.8	21	94	0	140	3	44	17	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35626149--35626241	21	4.4	21	90	0	60	7	43	16	33	1.76
35626149--35626262	42	2.7	42	84	0	111	7	42	15	33	1.76
35626274--35626399	66	1.9	66	88	6	193	15	26	17	41	1.88
35626274--35626422	66	2.3	66	84	4	185	14	25	18	41	1.88
35627018--35627166	74	2.0	74	97	0	280	34	20	16	28	1.95
35631907--35632018	9	13.3	9	74	14	105	33	1	17	47	1.59
35631907--35632018	25	4.5	25	87	0	161	33	1	17	47	1.59
35631931--35632013	16	5.1	16	76	13	80	31	2	18	48	1.61
35631907--35632018	50	2.2	50	91	0	179	33	1	17	47	1.59
35632007--35632071	34	1.9	34	100	0	130	29	3	15	52	1.58
35631907--35632100	12	15.9	12	65	16	87	30	2	17	48	1.60
35632269--35632343	29	2.6	29	97	0	141	28	2	22	46	1.65
35632235--35632346	16	7.2	16	65	15	74	29	3	23	43	1.70
35633106--35633146	19	2.1	20	95	4	75	53	0	0	46	1.00
35633763--35633824	29	2.1	29	91	5	99	53	24	4	17	1.63
35635194--35635240	19	2.5	19	75	3	51	14	6	2	76	1.08
35635579--35635632	23	2.4	23	87	3	74	29	48	1	20	1.60
35636079--35636112	15	2.2	16	94	5	61	47	32	0	20	1.51
35636400--35636594	41	4.8	41	77	6	189	29	23	24	23	1.99
35636636--35636769	40	3.4	40	80	6	132	20	20	21	37	1.95
35640199--35640223	4	6.2	4	100	0	50	24	0	0	76	0.80
35640465--35640601	15	9.5	14	76	7	53	43	35	1	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35640458--35640601	7	20.0	7	69	11	58	43	34	1	20	1.60
35640551--35640601	15	3.4	15	97	0	93	45	33	0	21	1.52
35640625--35640669	14	3.2	14	75	12	56	51	28	0	20	1.48
35640779--35640811	15	2.2	15	94	0	57	39	33	0	27	1.57
35640773--35640847	22	3.4	22	78	14	75	36	38	0	25	1.56
35640799--35640840	14	2.9	14	83	13	50	30	45	0	23	1.53
35640816--35640872	21	2.7	21	83	5	62	38	36	0	24	1.56
35641239--35641353	41	2.8	41	86	1	158	31	27	19	21	1.97
35645296--35645544	27	9.2	27	80	1	239	41	17	16	23	1.89
35645304--35645542	81	3.0	81	80	3	275	41	17	16	24	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228