genome.fa.s23.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  154  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46311693--46311900	45	4.7	45	75	4	190	30	20	22	26	1.98
46311693--46311903	89	2.4	89	83	3	255	30	20	21	27	1.98
46311693--46311958	89	3.0	89	78	3	205	31	20	21	26	1.98
46311823--46312416	143	4.2	143	86	2	768	30	20	21	27	1.98
46311828--46312416	286	2.1	286	88	1	871	30	20	21	27	1.98
46312478--46312685	45	4.7	45	81	4	215	30	20	23	25	1.98
46314308--46314342	3	11.7	3	93	0	61	31	0	2	65	1.07
46316196--46316235	21	1.9	22	85	10	57	57	0	17	25	1.40
46316683--46316713	9	3.4	9	90	0	53	38	22	12	25	1.90
46317527--46317589	32	2.1	29	85	8	81	38	0	3	58	1.14
46317955--46318012	24	2.4	23	88	5	80	55	0	3	41	1.17
46321587--46321611	6	4.2	6	100	0	50	68	0	16	16	1.22
46323952--46324131	92	2.0	92	87	2	263	43	8	23	23	1.82
46326148--46326197	21	2.4	21	96	0	91	46	10	18	26	1.80
46326723--46326768	22	2.1	21	84	15	58	15	6	4	73	1.19
46330185--46330286	30	3.4	30	82	4	127	26	19	25	28	1.99
46330151--46330286	59	2.3	60	85	5	186	27	21	24	26	1.99
46330155--46330286	30	4.4	30	77	3	115	28	21	24	25	1.99
46332898--46332952	21	2.6	22	82	8	78	32	3	0	63	1.12
46333122--46333165	22	2.1	20	84	12	61	52	2	0	45	1.13
46333229--46333275	20	2.5	19	87	12	71	59	0	0	40	0.97
46333353--46333414	25	2.4	26	76	15	67	75	4	4	14	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46338506--46338571	35	1.9	34	87	9	98	51	1	7	39	1.40
46339774--46339817	19	2.3	20	85	14	58	52	0	22	25	1.48
46345687--46345739	26	1.9	28	85	11	74	33	18	24	22	1.97
46356098--46356175	27	2.9	27	94	0	129	19	21	30	28	1.97
46356127--46356450	33	9.4	33	68	22	152	20	19	27	32	1.97
46356187--46356321	42	3.4	41	76	17	160	22	17	27	33	1.96
46356150--46356328	75	2.4	75	94	0	304	21	18	27	32	1.96
46356226--46356429	102	2.0	101	92	0	336	20	20	27	31	1.97
46356302--46356354	27	2.0	26	92	3	88	15	22	32	30	1.94
46356125--46356450	177	1.8	177	93	0	571	20	19	27	32	1.97
46358579--46358643	29	2.4	26	81	16	87	46	4	0	49	1.22
46366439--46366607	75	2.2	76	87	3	243	55	1	14	28	1.48
46366439--46366639	75	2.7	75	85	3	226	54	1	14	28	1.51
46366776--46366816	19	2.2	19	86	8	57	63	0	7	29	1.21
46366812--46366841	12	2.6	12	94	5	53	43	0	30	26	1.55
46366812--46366890	5	14.6	5	72	15	50	55	0	21	22	1.43
46366812--46366888	11	7.0	11	80	5	66	55	0	20	23	1.43
46366812--46366890	16	4.8	16	76	3	68	55	0	21	22	1.43
46368820--46369101	53	5.3	53	80	6	279	29	13	21	35	1.92
46368852--46369099	53	4.7	52	80	9	288	29	12	22	35	1.90
46368852--46369108	106	2.4	107	84	6	319	30	12	21	35	1.91
46385774--46385819	23	2.0	22	91	4	74	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46389213--46389276	31	2.1	31	96	0	119	39	10	6	43	1.65
46389801--46389853	9	5.8	9	77	18	56	66	3	0	30	1.10
46389801--46389853	20	2.8	19	83	8	65	66	3	0	30	1.10
46389972--46390017	21	2.1	22	84	11	60	43	6	0	50	1.28
46416779--46416925	20	7.4	19	71	10	73	14	30	19	35	1.92
46418940--46419053	42	2.7	42	78	10	117	25	18	25	30	1.98
46425054--46425078	8	3.1	8	100	0	50	24	0	0	76	0.80
46431922--46432063	44	3.2	44	89	2	214	27	16	26	29	1.97
46434371--46434656	99	2.8	98	80	5	324	43	12	9	34	1.75
46437420--46437545	62	2.0	61	95	1	225	27	11	17	42	1.84
46438122--46438158	14	2.8	14	88	8	51	10	0	40	48	1.38
46438279--46438598	92	3.4	93	83	8	357	40	3	18	37	1.69
46438279--46438598	93	3.4	92	84	7	371	40	3	18	37	1.69
46438280--46438616	186	1.8	185	81	8	416	40	4	18	37	1.70
46438635--46438920	126	2.3	126	91	0	464	31	19	23	26	1.98
46441471--46441531	11	5.6	11	86	5	81	45	1	31	21	1.61
46441933--46441991	9	6.6	9	86	9	68	28	0	3	67	1.06
46457174--46457300	62	2.0	62	98	0	245	29	12	16	41	1.85
46458264--46458307	23	1.9	23	90	0	70	43	9	4	43	1.56
46460970--46461007	19	2.0	19	100	0	76	15	31	15	36	1.90
46482244--46482494	101	2.5	97	81	9	281	44	11	8	35	1.71
46486300--46486341	23	1.9	22	85	9	59	42	7	4	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46487791--46487841	9	5.6	9	80	15	52	29	0	3	66	1.09
46487790--46487840	20	2.7	19	80	11	61	29	0	3	66	1.09
46497830--46497874	21	2.1	22	84	12	58	51	0	6	42	1.28
46497996--46498048	9	5.8	9	81	14	56	30	0	3	66	1.10
46497996--46498047	20	2.8	20	82	8	65	30	0	3	65	1.10
46498579--46498642	31	2.1	31	96	0	119	43	6	10	39	1.65
46502082--46502128	23	2.0	23	91	0	76	57	0	0	42	0.98
46504684--46504847	43	3.9	43	76	7	131	28	29	18	23	1.97
46504684--46504803	43	2.8	43	84	3	145	25	30	18	25	1.98
46506181--46506218	15	2.4	17	86	8	53	68	2	0	28	1.03
46509110--46509144	12	2.9	12	91	0	52	42	31	5	20	1.75
46510943--46510980	15	2.6	16	84	16	55	39	34	0	26	1.57
46510954--46510995	14	2.9	15	86	10	52	35	38	0	26	1.57
46510945--46511058	49	2.3	51	85	8	155	37	37	0	24	1.56
46511595--46511789	41	4.8	41	90	0	291	33	24	21	21	1.97
46514038--46514086	23	2.2	22	79	17	57	59	0	8	32	1.27
46515717--46516110	44	8.9	42	73	14	161	29	22	17	30	1.97
46515901--46516334	44	9.8	43	72	12	231	30	22	16	30	1.96
46515911--46516334	85	4.8	88	74	11	287	30	21	16	30	1.95
46515898--46516329	133	3.3	130	74	13	357	30	22	16	31	1.95
46515669--46516334	225	3.0	224	78	7	681	29	21	16	31	1.96
46527729--46527798	23	2.9	23	74	17	70	61	1	4	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46543719--46543795	22	3.4	22	67	19	68	36	25	2	35	1.70
46543705--46543800	46	2.1	46	100	0	192	40	22	2	34	1.66
46547877--46547923	23	2.0	23	91	0	76	42	0	0	57	0.98
46551359--46551422	31	2.1	31	96	0	119	39	10	6	43	1.65
46551951--46552003	9	5.8	9	77	18	56	66	3	0	30	1.10
46551951--46552003	20	2.8	19	83	8	65	66	3	0	30	1.10
46552125--46552169	21	2.1	22	84	12	58	42	6	0	51	1.28
46564523--46564557	17	2.0	18	88	5	54	42	11	0	45	1.40
46575127--46575177	9	5.6	9	76	19	52	66	3	0	29	1.09
46575127--46575177	20	2.7	19	82	8	61	66	3	0	29	1.09
46576475--46576526	22	2.4	22	80	6	61	38	0	21	40	1.53
46576605--46576648	23	1.9	23	85	0	61	43	6	9	40	1.63
46580349--46580684	100	3.4	100	76	11	307	33	9	13	44	1.75
46585108--46585384	137	2.0	137	97	0	527	28	23	17	30	1.97
46602050--46602087	19	2.0	19	100	0	76	36	15	31	15	1.90
46606913--46606972	23	2.8	21	80	9	66	46	5	6	41	1.52
46606923--46606966	23	1.9	23	90	0	70	43	4	9	43	1.56
46607930--46608056	62	2.0	62	98	0	245	41	16	12	29	1.85
46623125--46623167	9	4.8	9	91	5	61	67	4	0	27	1.10
46623581--46623682	51	2.0	51	96	0	186	25	27	1	45	1.64
46623569--46623670	11	9.5	11	71	16	72	23	28	1	46	1.63
46626213--46626488	126	2.2	126	92	0	462	26	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46626535--46626846	90	3.4	92	82	11	374	37	18	3	40	1.69
46626693--46626891	94	2.1	94	82	7	235	40	15	3	40	1.64
46626967--46627003	14	2.8	14	88	8	51	48	40	0	10	1.38
46627576--46627701	62	2.0	61	95	1	225	42	17	11	27	1.84
46630429--46630740	100	3.1	97	76	8	279	33	10	13	42	1.78
46633039--46633191	44	3.5	43	84	7	182	30	26	16	26	1.97
46637648--46637690	19	2.2	20	84	12	63	32	18	0	48	1.48
46640029--46640053	8	3.1	8	100	0	50	76	0	0	24	0.80
46646050--46646164	43	2.7	43	80	1	133	31	25	18	25	1.97
46648186--46648323	19	7.2	19	65	26	58	35	19	32	12	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228