genome.fa.s23.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  121  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35645700--35645767	26	2.6	26	80	2	64	16	20	23	39	1.91
35645722--35645793	26	2.8	26	86	0	99	16	18	22	43	1.88
35645913--35645969	28	2.1	27	90	3	87	22	26	26	24	2.00
35646720--35646791	27	2.7	26	80	4	90	33	15	26	25	1.95
35659064--35659088	3	8.3	3	100	0	50	68	0	0	32	0.90
35662440--35662478	19	2.1	19	85	0	51	28	17	2	51	1.59
35663527--35663654	36	3.6	35	78	8	107	43	31	11	13	1.80
35663527--35663618	35	2.6	36	79	8	107	43	31	10	14	1.79
35670482--35670594	35	3.2	35	82	5	111	43	26	12	17	1.85
35671669--35671698	12	2.5	12	94	0	51	6	20	40	33	1.78
35672507--35672674	84	2.0	84	97	0	318	35	14	19	30	1.92
35676706--35676809	52	2.0	52	100	0	208	30	13	11	44	1.79
35677885--35677931	24	2.0	24	95	0	85	29	17	14	38	1.89
35679543--35679567	8	3.1	8	100	0	50	24	0	0	76	0.80
35679994--35680031	15	2.6	14	84	15	51	39	15	5	39	1.70
35684343--35684381	14	2.8	14	88	0	51	43	2	0	53	1.14
35687296--35687362	18	3.8	18	71	13	59	43	7	14	34	1.74
35689030--35689079	12	4.0	13	75	15	52	36	0	40	24	1.55
35689734--35689876	27	5.3	27	83	0	189	42	22	16	18	1.89
35693189--35693522	55	6.0	56	85	4	372	43	15	10	30	1.80
35693220--35693522	113	2.7	112	86	4	389	44	14	9	31	1.78
35694341--35694385	18	2.4	18	81	3	54	13	2	42	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35702190--35702394	27	7.9	27	74	13	146	32	13	19	34	1.90
35702190--35702395	54	3.9	53	71	14	167	32	13	19	34	1.90
35705291--35705430	39	3.6	39	76	10	133	31	22	17	27	1.97
35706240--35706310	22	3.2	22	78	11	83	2	25	2	69	1.16
35706758--35706792	3	11.7	3	100	0	70	68	0	0	31	0.90
35710237--35710345	41	2.7	41	81	5	114	20	21	26	32	1.97
35719577--35719606	15	1.9	16	93	6	53	66	3	6	23	1.30
35722173--35722238	24	2.7	24	80	2	78	27	22	21	28	1.99
35722177--35722290	25	4.6	25	69	8	81	31	21	21	25	1.98
35736085--35736119	3	11.7	3	100	0	70	34	0	34	31	1.58
35737808--35737996	51	3.7	51	83	4	204	25	17	27	29	1.98
35752496--35752720	80	2.8	79	84	6	276	25	26	22	25	2.00
35752496--35752720	119	1.9	120	83	6	296	25	26	22	25	2.00
35752496--35752720	40	5.7	40	83	11	243	25	26	22	25	2.00
35760550--35760773	40	5.6	39	85	6	265	25	27	22	24	2.00
35760550--35760774	80	2.8	79	85	6	294	25	27	22	24	2.00
35760550--35760774	119	1.9	120	85	6	314	25	27	22	24	2.00
35765627--35765693	28	2.4	28	75	2	73	32	20	25	20	1.97
35765905--35766220	32	9.9	32	84	0	389	39	18	19	22	1.92
35766292--35766605	27	11.7	27	83	2	391	25	21	20	33	1.97
35766584--35766636	27	2.0	27	92	0	88	24	18	20	35	1.95
35766594--35766681	27	3.3	26	81	10	97	25	13	18	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35769753--35769817	22	3.0	21	75	4	67	44	16	21	16	1.86
35769834--35770075	32	7.6	32	86	0	286	39	21	19	19	1.92
35770226--35770300	23	3.2	23	79	5	69	48	25	4	22	1.68
35770236--35770302	23	2.9	23	81	2	71	47	23	4	23	1.70
35770315--35770738	27	15.7	27	84	0	497	24	20	19	35	1.96
35770311--35770738	54	7.9	54	87	2	563	24	20	19	35	1.96
35770717--35770778	27	2.3	27	91	0	97	17	12	25	43	1.85
35770730--35770784	27	2.0	27	85	0	74	23	14	21	40	1.90
35774707--35774738	16	2.0	17	88	11	50	37	0	6	56	1.25
35775040--35775087	20	2.4	20	86	6	62	6	31	20	41	1.77
35777642--35777688	20	2.3	20	81	0	58	23	12	34	29	1.92
35780511--35780565	23	2.3	24	87	9	78	5	14	5	74	1.18
35780559--35780583	11	2.3	11	100	0	50	16	0	8	76	1.02
35790970--35791001	14	2.3	14	100	0	64	21	12	6	59	1.55
35791425--35791502	39	2.0	39	100	0	156	33	25	17	23	1.96
35795777--35796027	69	3.7	67	81	4	279	30	9	14	45	1.76
35799512--35799580	26	2.7	26	81	0	84	27	26	21	24	1.99
35803526--35803596	25	2.9	25	87	2	90	38	16	15	29	1.90
35803551--35803658	25	4.3	25	81	4	112	30	22	21	25	1.98
35816908--35817146	50	4.7	50	81	3	237	27	21	28	23	1.99
35824508--35824610	39	2.7	39	78	1	109	40	24	6	28	1.80
35835788--35835891	38	2.7	39	83	3	129	29	16	23	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35839722--35839932	43	4.9	43	84	2	210	25	18	25	31	1.98
35839745--35839972	43	5.3	43	87	2	273	23	17	25	32	1.97
35846168--35846722	282	2.0	280	97	0	1038	33	18	14	32	1.92
35850674--35850726	7	7.4	7	78	4	61	35	0	3	60	1.15
35850674--35850753	39	2.1	36	90	6	124	32	0	6	61	1.21
35852213--35852750	120	4.5	120	98	0	986	43	2	5	49	1.38
35852467--35852513	16	3.0	16	78	12	53	46	0	2	51	1.13
35852962--35852999	16	2.4	16	90	0	67	26	34	2	36	1.71
35863278--35863309	14	2.3	15	89	10	50	43	6	0	50	1.27
35877751--35877871	61	2.0	61	100	0	242	46	9	21	23	1.79
35884722--35884746	2	12.5	2	100	0	50	0	48	0	52	1.00
35887571--35887612	22	2.0	22	85	4	59	14	14	38	33	1.86
35887541--35887717	71	2.5	70	79	7	178	19	18	26	36	1.94
35891224--35891340	62	1.9	61	82	5	148	48	5	4	41	1.45
35892917--35892947	16	1.9	16	93	0	53	70	9	9	9	1.33
35895332--35895427	35	2.7	35	76	9	88	26	19	20	33	1.97
35898838--35898884	22	2.0	24	88	8	71	23	8	0	68	1.17
35902468--35902547	34	2.4	34	85	4	108	31	35	12	21	1.90
35903314--35903370	29	2.0	29	100	0	114	66	14	1	17	1.33
35910792--35910893	26	3.9	26	84	0	132	18	20	23	37	1.94
35910792--35910893	52	2.0	52	88	0	150	18	20	23	37	1.94
35910994--35911058	27	2.4	27	82	7	78	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35911724--35911787	28	2.3	28	89	2	94	31	21	20	26	1.98
35911735--35911789	28	2.0	28	96	0	101	25	23	23	27	2.00
35911892--35911971	26	3.1	26	76	7	81	33	20	21	25	1.97
35912140--35912508	27	13.7	27	84	6	385	19	18	18	44	1.87
35918924--35919024	34	3.1	34	73	16	97	30	22	20	25	1.98
35918952--35919023	28	2.5	28	95	2	126	30	23	20	25	1.99
35919131--35919199	26	2.7	26	90	0	102	39	26	18	15	1.91
35919398--35919764	27	13.6	27	81	1	335	18	17	18	45	1.86
35924763--35924803	21	2.0	21	85	0	55	36	24	9	29	1.87
35927347--35927474	39	3.3	39	88	3	168	29	23	14	32	1.95
35935927--35936103	89	2.0	90	96	1	329	36	12	12	37	1.83
35938479--35938559	18	4.6	17	69	23	60	49	11	3	35	1.56
35941803--35941836	18	1.9	18	88	5	52	32	20	11	35	1.89
35942100--35942172	21	3.6	19	78	10	65	49	0	0	50	1.00
35942389--35942421	13	2.6	13	90	4	50	39	24	6	30	1.79
35942424--35942457	13	2.6	13	90	0	50	23	35	5	35	1.79
35951592--35951635	20	2.3	19	81	14	54	52	0	2	45	1.13
35952957--35953005	19	2.6	18	81	15	55	63	4	0	32	1.13
35953543--35953600	29	2.0	28	83	9	73	51	5	1	41	1.34
35953586--35953621	19	1.9	19	88	5	56	44	5	2	47	1.41
35956972--35957045	22	3.4	21	74	9	67	12	28	16	43	1.83
35956972--35957055	44	1.9	44	82	0	105	14	28	15	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35957827--35957893	30	2.2	30	86	0	89	23	17	23	34	1.96
35960711--35960770	30	2.0	31	83	3	77	21	33	1	43	1.63
35961522--35961552	5	6.2	5	100	0	62	19	19	19	41	1.90
35966382--35966710	50	6.5	50	80	4	329	27	22	27	22	1.99
35966382--35966710	100	3.2	100	87	4	446	27	22	27	22	1.99
35966429--35966762	50	6.7	49	78	6	307	29	22	26	21	1.99
35969490--35969665	47	3.7	47	96	2	307	30	9	31	29	1.88
35969490--35969665	96	1.8	95	93	3	309	30	9	31	29	1.88
35969783--35969861	37	2.1	37	90	0	122	24	18	31	25	1.98
35971730--35971875	43	3.4	43	99	0	283	22	14	35	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228