genome.fa.s23.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  207  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60473615--60473714	50	2.0	50	100	0	200	40	22	16	22	1.91
60477430--60477466	11	3.0	13	76	15	51	37	18	8	35	1.81
60478638--60478666	3	9.7	3	100	0	58	65	0	0	34	0.93
60481129--60481161	3	11.0	3	100	0	66	66	0	0	33	0.92
60481858--60481899	15	2.7	15	88	3	57	4	19	2	73	1.12
60481908--60481954	5	9.4	5	84	15	62	57	0	0	42	0.98
60481909--60481958	19	2.7	19	85	14	77	58	0	0	42	0.98
60484220--60484269	13	4.0	13	84	10	77	38	20	8	34	1.82
60484217--60484264	24	2.0	24	100	0	96	37	16	8	37	1.79
60485437--60485469	3	11.0	3	100	0	66	66	0	0	33	0.92
60494419--60494473	24	2.2	26	87	12	80	30	0	3	65	1.10
60496995--60497106	56	2.0	56	98	0	215	31	11	16	41	1.84
60500257--60500286	15	2.0	15	93	0	51	40	10	0	50	1.36
60503749--60503785	18	2.1	18	94	0	65	48	21	8	21	1.76
60513231--60513264	16	2.1	16	94	0	59	29	20	11	38	1.88
60518084--60518118	18	1.9	18	100	0	70	51	20	5	22	1.68
60524846--60524893	23	2.1	23	100	0	96	41	12	18	27	1.86
60531042--60531090	24	2.0	26	88	8	75	59	0	0	40	0.98
60531047--60531100	25	2.2	25	77	9	58	61	0	1	37	1.07
60533429--60533497	26	2.6	27	81	6	88	60	2	2	33	1.26
60534205--60534815	116	5.5	114	88	6	871	34	16	14	34	1.89
60534224--60534823	115	5.4	111	87	7	631	34	16	14	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60534217--60534823	114	5.5	108	86	7	654	34	16	14	34	1.89
60535000--60535047	19	2.7	18	81	15	55	37	0	2	60	1.09
60535458--60535502	23	2.0	22	82	4	54	37	0	2	60	1.09
60536846--60536990	76	1.9	76	84	5	195	30	17	22	30	1.96
60537727--60537764	19	2.0	20	84	5	51	52	2	10	34	1.50
60537974--60538020	5	9.4	5	81	9	60	38	0	19	42	1.51
60540752--60540786	19	1.9	17	88	11	52	51	0	11	37	1.38
60553500--60553525	11	2.4	11	100	0	52	26	0	0	73	0.84
60597450--60597508	31	1.9	31	86	6	84	44	5	10	40	1.60
60597596--60597631	19	2.0	18	89	10	56	27	0	5	66	1.13
60603453--60603507	27	2.0	27	86	6	76	12	14	0	72	1.12
60603720--60603754	17	2.1	17	94	0	61	34	5	8	51	1.56
60604933--60604997	31	2.1	31	85	0	85	32	9	10	47	1.70
60611344--60611485	31	4.6	31	74	0	122	33	11	10	43	1.76
60617268--60617352	29	2.8	30	71	10	82	28	12	11	47	1.77
60627635--60627911	125	2.2	124	91	2	448	31	23	17	27	1.97
60628573--60628648	20	3.8	19	75	25	68	61	5	0	32	1.18
60628573--60628648	40	1.9	39	86	7	109	61	5	0	32	1.18
60633544--60634104	173	3.2	172	80	5	522	39	20	8	32	1.82
60633544--60634104	174	3.2	171	80	5	558	39	20	8	32	1.82
60637108--60637166	30	2.0	30	83	6	75	45	1	0	52	1.10
60660922--60661161	94	2.6	94	81	2	259	30	10	19	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60663864--60663894	9	3.4	9	90	0	53	25	12	22	38	1.90
60664019--60664078	30	2.0	30	90	6	95	20	31	1	46	1.60
60671868--60671907	18	2.2	18	86	0	53	77	10	10	2	1.08
60674428--60674479	20	2.6	21	81	9	63	73	11	0	15	1.11
60675271--60675355	43	2.0	43	88	4	127	15	57	4	22	1.56
60675289--60675375	43	2.0	43	82	4	104	16	51	5	26	1.66
60679186--60679242	29	2.0	29	86	6	80	61	5	1	31	1.28
60681226--60681270	22	2.0	22	86	4	63	46	0	4	48	1.22
60681237--60681293	23	2.4	24	83	13	73	52	0	0	47	1.00
60681654--60681702	15	3.3	15	78	13	57	32	16	0	51	1.45
60694386--60694436	25	2.0	27	92	7	88	39	11	7	41	1.71
60696153--60696210	29	2.0	30	89	3	91	37	0	8	53	1.32
60701504--60701544	9	4.1	10	82	17	50	26	0	4	68	1.10
60701510--60701554	20	2.2	21	84	11	58	26	2	4	66	1.22
60702119--60702204	3	28.7	3	100	0	172	67	0	32	0	0.91
60708405--60708457	6	8.8	6	82	0	52	54	0	7	37	1.29
60708405--60708457	9	5.9	9	79	0	52	54	0	7	37	1.29
60708402--60708457	15	3.8	15	83	2	69	55	0	7	37	1.27
60715808--60715844	18	2.1	18	90	5	58	54	2	5	37	1.38
60715915--60716017	40	2.6	39	76	17	104	32	0	3	63	1.19
60715914--60715969	20	2.8	19	78	8	58	32	0	5	62	1.18
60715914--60716011	42	2.4	41	77	17	105	32	1	4	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60722717--60722802	42	2.0	42	82	4	102	16	31	24	27	1.96
60727926--60728009	25	3.3	26	76	14	61	58	2	5	33	1.35
60728131--60728193	3	21.3	3	77	9	67	63	1	1	33	1.13
60729529--60730306	44	17.7	44	65	13	246	28	24	18	28	1.98
60730584--60730705	44	2.8	44	82	3	129	29	26	16	27	1.97
60729509--60731219	132	13.0	132	90	1	2463	29	24	18	27	1.98
60732540--60732589	23	2.2	23	82	13	59	12	18	0	70	1.17
60737852--60737911	25	2.3	26	80	8	61	58	1	6	33	1.34
60738029--60738080	9	5.8	9	82	8	61	71	0	1	26	0.97
60738029--60738097	6	11.7	6	80	7	70	68	1	1	28	1.07
60738029--60738096	15	4.9	14	76	16	61	67	1	1	29	1.08
60738029--60738105	30	2.5	30	85	10	95	68	2	1	27	1.10
60742566--60742748	95	1.9	95	93	0	312	22	3	12	61	1.46
60744370--60744399	15	2.0	15	93	0	51	50	0	10	40	1.36
60744524--60744572	25	1.9	26	84	12	66	40	6	10	42	1.63
60746616--60746675	25	2.4	24	83	5	75	63	1	6	28	1.29
60746623--60746686	25	2.5	25	70	14	58	64	1	6	28	1.27
60746939--60746981	20	2.2	20	86	0	59	60	2	0	37	1.10
60754533--60754575	3	14.3	3	80	0	50	32	9	0	58	1.30
60754533--60754572	6	6.7	6	97	0	62	32	10	0	57	1.32
60754771--60754826	26	2.1	27	83	3	69	41	8	1	48	1.45
60758982--60759036	6	8.8	6	79	16	51	78	0	20	1	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60758983--60759036	21	2.5	21	90	3	81	77	0	20	1	0.86
60758990--60759034	15	2.9	15	81	12	56	77	0	20	2	0.87
60759893--60759950	24	2.4	24	94	0	98	32	12	25	29	1.92
60760266--60760700	44	10.0	44	64	13	146	30	19	24	26	1.98
60760266--60760700	131	3.3	131	90	0	674	30	19	24	26	1.98
60760267--60760787	131	4.0	131	84	6	547	30	19	23	26	1.98
60760724--60760918	44	4.5	43	70	10	164	32	20	21	26	1.97
60760839--60760996	85	1.9	85	83	0	208	29	24	19	25	1.98
60762646--60762701	26	2.1	27	83	3	69	41	8	1	48	1.45
60765503--60765536	5	7.0	5	93	6	61	79	0	0	20	0.73
60765976--60766013	20	1.9	20	84	10	51	60	0	5	34	1.19
60777984--60778012	5	6.0	5	92	8	51	79	0	0	20	0.74
60778439--60778486	21	2.4	21	86	6	64	54	2	6	37	1.38
60780077--60780322	87	2.8	87	86	4	280	25	21	23	29	1.99
60780108--60780492	44	8.8	45	73	11	263	25	21	21	31	1.98
60792586--60792618	5	7.0	5	86	13	52	78	0	0	21	0.75
60792586--60792618	9	3.6	9	95	4	57	78	0	0	21	0.75
60793058--60793095	20	1.9	20	84	10	51	60	0	5	34	1.19
60793118--60793179	14	4.4	14	76	13	65	64	3	3	29	1.25
60796651--60796709	20	2.9	21	82	5	66	59	5	0	35	1.20
60796654--60796708	18	2.9	19	79	10	60	60	5	0	34	1.20
60796686--60796737	26	2.0	26	96	0	95	50	3	1	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60799990--60800029	21	1.9	21	94	0	71	25	22	35	17	1.95
60804250--60804284	18	1.9	18	88	0	52	65	11	5	17	1.43
60805555--60805770	107	2.0	107	94	0	378	34	17	17	30	1.93
60806331--60806380	20	2.5	20	84	15	68	54	0	8	38	1.30
60806398--60806451	26	2.1	26	85	0	72	46	9	12	31	1.74
60807199--60807239	17	2.5	17	80	7	50	17	12	2	68	1.31
60807907--60807938	14	2.1	16	88	11	50	43	15	12	28	1.83
60822412--60822451	20	2.0	20	85	4	55	60	5	2	32	1.32
60823200--60823342	72	2.0	72	94	0	250	34	18	18	28	1.95
60823865--60823904	18	2.3	18	86	4	64	52	0	5	42	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228