genome.fa.s23.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  161  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48319088--48319135	15	3.0	15	81	9	51	41	2	0	56	1.11
48319269--48319373	44	2.5	41	77	20	126	37	30	2	29	1.72
48319285--48319375	46	2.0	44	91	8	148	39	30	3	26	1.72
48319355--48319423	16	4.3	16	94	0	120	21	33	5	39	1.77
48327753--48328102	188	1.9	187	88	1	531	31	18	22	27	1.97
48327961--48328210	112	2.2	113	83	7	310	31	17	24	27	1.97
48327718--48328511	300	2.6	299	89	3	1159	32	18	22	26	1.97
48328139--48328275	74	1.9	73	87	1	202	32	16	21	29	1.95
48328187--48328539	114	3.1	113	78	5	381	31	18	23	27	1.97
48328559--48328616	16	3.6	16	92	2	98	32	0	8	58	1.28
48328560--48328633	17	4.1	19	71	22	61	33	0	8	58	1.28
48328559--48328633	32	2.2	33	88	9	107	33	0	8	58	1.27
48330772--48330806	3	11.7	3	100	0	70	68	0	0	31	0.90
48331780--48332322	9	62.2	9	76	13	469	46	21	0	31	1.54
48331971--48332313	78	4.3	78	93	6	596	47	21	0	31	1.51
48337794--48337864	21	3.4	21	86	0	97	32	18	45	4	1.69
48338183--48338384	42	4.8	42	86	6	293	32	21	20	25	1.98
48338181--48338426	83	2.9	84	86	4	336	32	19	21	26	1.97
48338190--48338471	42	6.7	42	85	4	142	29	19	21	28	1.98
48338374--48338611	42	5.4	41	76	16	183	24	20	23	31	1.98
48341133--48341196	12	5.4	11	80	17	51	78	1	1	18	0.92
48341120--48341205	28	3.1	28	76	15	88	77	4	1	16	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48341336--48341377	10	3.9	11	82	14	52	73	4	0	21	1.01
48341334--48341384	22	2.5	20	76	14	59	74	3	0	21	0.98
48341615--48341649	17	2.0	17	88	5	52	48	2	5	42	1.41
48344461--48344487	14	1.9	14	100	0	54	74	7	3	14	1.18
48344475--48344520	17	2.6	18	83	13	60	76	6	0	17	1.00
48346637--48346678	20	2.1	20	86	8	59	40	2	0	57	1.12
48348820--48348883	33	1.9	34	87	9	96	29	4	7	57	1.47
48358550--48358620	25	2.8	25	87	4	90	25	19	18	36	1.94
48358549--48358637	25	3.6	25	82	0	88	25	17	19	37	1.94
48364851--48364978	10	13.3	10	64	17	56	29	2	2	65	1.17
48364859--48364926	17	3.9	16	74	22	57	27	2	1	67	1.13
48366110--48366159	25	2.0	25	84	7	66	6	32	4	58	1.41
48366116--48366150	17	1.9	19	88	11	56	5	31	2	60	1.35
48377495--48377533	19	2.1	19	85	9	53	38	7	5	48	1.54
48380980--48381018	20	1.9	21	89	5	62	30	15	0	53	1.42
48397467--48397532	13	5.1	13	74	7	62	34	13	9	42	1.76
48402157--48402241	9	9.4	9	83	5	109	41	21	11	25	1.87
48407827--48407863	2	18.5	2	100	0	74	48	0	51	0	1.00
48416571--48416613	22	1.9	23	90	4	70	76	6	16	0	0.99
48417313--48417382	24	2.8	25	74	26	76	42	0	7	50	1.30
48423611--48423658	22	2.2	22	82	10	55	43	31	8	16	1.78
48427778--48427854	25	3.2	24	72	18	70	44	1	1	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48427784--48427880	48	2.0	51	84	10	130	40	2	3	54	1.28
48430978--48431019	21	2.0	21	100	0	84	42	0	19	38	1.51
48431024--48431061	20	1.9	20	84	10	51	60	0	10	28	1.30
48433427--48433466	21	1.9	21	85	10	55	27	10	17	45	1.80
48434411--48434466	29	1.9	29	92	0	94	50	10	30	8	1.68
48439008--48439038	14	2.2	14	94	0	53	32	9	19	38	1.84
48441353--48441403	25	2.0	25	96	0	93	33	11	33	21	1.90
48448194--48448232	18	2.2	17	86	13	53	33	0	20	46	1.51
48448458--48448533	23	3.3	23	88	0	116	21	19	27	31	1.97
48453266--48453318	26	2.0	27	96	3	99	32	22	26	18	1.97
48456090--48456142	23	2.4	22	76	20	56	9	18	1	69	1.25
48462037--48462074	20	1.9	19	94	5	67	21	13	0	65	1.26
48462177--48462234	30	1.9	29	83	13	73	37	17	17	27	1.92
48475584--48475640	24	2.4	24	78	0	69	12	15	26	45	1.82
48475621--48475683	20	3.0	20	83	4	63	14	14	22	49	1.79
48486412--48486441	14	2.1	14	93	0	51	46	0	0	53	1.00
48493218--48493368	10	15.8	10	64	21	56	47	1	0	50	1.12
48492625--48493273	91	7.1	91	95	1	1117	45	4	3	46	1.39
48492860--48493182	44	7.0	52	65	22	108	45	4	2	47	1.37
48493307--48493360	15	3.4	16	80	19	53	46	1	0	51	1.11
48493224--48493615	54	6.8	55	67	20	196	45	2	3	47	1.34
48493303--48493385	28	2.8	29	70	12	71	43	3	0	53	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48493297--48493602	122	2.5	121	90	2	474	44	2	4	48	1.37
48500634--48500676	21	2.0	22	82	13	54	16	20	25	37	1.93
48508071--48508217	41	3.6	41	87	0	204	23	22	23	31	1.99
48508065--48508217	82	1.9	82	88	0	234	22	22	22	31	1.99
48510349--48510388	20	2.0	20	90	0	62	75	7	0	17	1.03
48511530--48511639	45	2.4	45	86	0	148	22	19	18	40	1.92
48513921--48513996	23	3.3	23	86	0	116	22	21	26	30	1.99
48520267--48520293	6	4.5	6	100	0	54	29	14	0	55	1.40
48521288--48521325	18	2.1	18	85	9	51	44	0	0	55	0.99
48523789--48523834	21	2.2	21	92	0	74	39	21	21	17	1.93
48530586--48530610	9	2.8	9	100	0	50	32	36	0	32	1.58
48532746--48532789	22	1.9	23	86	9	63	65	13	2	18	1.36
48538690--48538734	11	3.9	12	77	16	51	24	31	2	42	1.67
48538690--48538742	22	2.4	21	81	15	54	26	28	3	41	1.73
48541164--48542305	22	53.0	22	83	5	1367	43	29	0	26	1.58
48541165--48541217	27	1.9	28	92	3	90	43	33	0	22	1.54
48541193--48542302	43	25.9	43	84	4	1370	43	29	0	26	1.58
48542305--48542583	114	2.4	114	96	0	513	41	8	7	42	1.63
48545508--48545913	126	3.2	126	87	3	554	29	22	16	30	1.96
48548457--48548482	10	2.6	10	100	0	52	19	19	15	46	1.85
48551393--48551508	42	2.8	42	73	15	121	43	16	22	17	1.87
48551495--48551542	20	2.4	21	86	6	64	47	16	18	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48558946--48558994	22	2.2	22	85	7	64	26	14	28	30	1.95
48563715--48563900	93	2.0	93	98	0	363	18	28	15	37	1.91
48564332--48564391	27	2.3	26	82	2	66	41	0	1	56	1.09
48564331--48564391	26	2.3	26	77	0	68	40	0	1	57	1.08
48565226--48565277	24	2.2	24	96	3	97	26	46	7	19	1.77
48565646--48565678	15	2.2	15	100	0	66	6	27	0	66	1.15
48565871--48566120	137	1.9	132	85	5	349	14	13	14	57	1.65
48567617--48567747	65	2.0	65	98	0	253	31	14	18	35	1.91
48570717--48570776	2	30.0	2	96	0	111	48	50	1	0	1.11
48571590--48571618	5	5.8	5	100	0	58	41	0	0	58	0.98
48571854--48571918	30	2.2	30	100	0	130	24	26	6	43	1.77
48580853--48580903	26	2.0	26	92	0	84	27	15	27	29	1.96
48581112--48581142	15	2.1	14	94	5	53	19	19	12	48	1.81
48585264--48585305	20	2.1	20	86	0	57	47	0	7	45	1.30
48586069--48586094	5	5.2	5	100	0	52	42	19	19	19	1.90
48587097--48587127	9	3.4	9	90	0	53	38	22	12	25	1.90
48591511--48591552	20	2.1	20	86	0	57	47	0	7	45	1.30
48594192--48594444	110	2.4	105	81	12	332	28	1	13	57	1.45
48599843--48599937	24	4.0	24	73	9	79	55	8	6	29	1.54
48601886--48601994	42	2.5	44	83	2	141	32	20	18	29	1.96
48602129--48602656	88	6.0	88	92	0	849	24	24	24	26	2.00
48605342--48605383	17	2.5	17	85	11	52	76	0	16	7	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48610494--48610673	56	3.4	53	84	8	240	4	32	2	61	1.28
48610494--48610598	52	2.2	46	85	11	131	3	30	2	62	1.27
48610662--48610700	5	8.0	5	94	5	71	0	58	0	41	0.98
48612060--48612211	43	3.5	42	70	11	112	29	15	20	34	1.93
48612136--48612232	42	2.3	42	81	12	101	27	18	23	29	1.98
48613668--48613959	23	12.6	23	78	4	264	29	12	17	40	1.86
48613665--48613909	46	5.3	46	82	2	303	28	11	18	40	1.86
48613665--48613917	92	2.7	92	90	0	398	29	11	17	41	1.85
48614298--48614328	3	10.3	3	100	0	62	67	0	0	32	0.91
48614725--48614784	30	2.0	31	83	9	79	20	38	0	41	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228