genome.fa.s23.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  166  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49753986--49754058	19	3.7	19	76	20	71	61	0	4	34	1.15
49754063--49754091	15	2.0	15	93	6	51	58	0	6	34	1.25
49755306--49755330	2	12.5	2	100	0	50	48	0	0	52	1.00
49755726--49755806	36	2.3	34	80	18	94	40	2	4	51	1.37
49755931--49755976	19	2.5	18	82	3	56	36	0	4	58	1.18
49764498--49764542	19	2.2	20	85	14	58	55	6	2	35	1.38
49790033--49790074	21	2.0	21	85	0	57	42	16	4	35	1.69
49794888--49795075	51	3.7	50	81	3	198	31	27	15	25	1.96
49794989--49795021	14	2.5	13	90	9	50	39	27	9	24	1.85
49808611--49808759	74	2.0	75	90	1	237	27	10	19	42	1.84
49808859--49809519	73	9.1	75	78	10	497	26	22	14	36	1.93
49808863--49809486	108	5.7	106	80	9	492	26	22	14	37	1.92
49808855--49809519	148	4.6	146	80	7	669	25	23	14	36	1.93
49808859--49809519	37	18.1	38	78	9	603	26	22	14	36	1.93
49812103--49812144	15	2.8	15	85	7	59	0	33	9	57	1.31
49817649--49817702	24	2.3	23	83	6	63	37	1	3	57	1.27
49819465--49819514	23	2.2	23	92	0	82	24	16	14	46	1.83
49819692--49819738	23	2.1	23	88	7	71	34	17	17	31	1.92
49824117--49824146	12	2.5	12	94	0	51	6	30	40	23	1.80
49831931--49832038	51	2.1	52	89	5	166	29	17	8	44	1.78
49841513--49841554	20	2.1	20	86	0	57	47	0	7	45	1.30
49842252--49842386	49	2.7	49	78	5	139	31	22	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49846072--49846124	26	2.0	26	100	0	106	18	11	26	43	1.84
49849749--49849995	50	4.8	50	79	7	205	28	21	27	23	1.99
49849802--49849995	50	3.9	50	82	4	214	27	22	28	21	1.99
49855254--49855295	20	2.1	20	86	0	57	47	0	7	45	1.30
49868644--49868720	35	2.2	35	100	0	154	42	14	12	29	1.83
49868737--49868822	4	21.5	4	95	0	154	22	0	27	50	1.50
49883321--49883360	11	3.6	11	93	6	64	22	35	0	42	1.54
49884367--49884404	20	1.9	20	89	10	60	36	2	5	55	1.37
49885809--49886376	23	25.8	23	81	10	597	47	26	0	26	1.55
49885807--49886376	44	13.0	44	86	7	702	46	26	0	26	1.56
49886442--49886510	27	2.6	26	71	22	70	43	5	1	49	1.35
49886381--49886624	116	2.1	117	92	1	402	39	9	6	44	1.63
49889634--49890004	125	3.0	124	90	1	571	31	23	14	30	1.94
49890569--49890600	14	2.3	14	94	0	55	12	15	0	71	1.14
49896456--49896548	42	2.2	42	88	0	150	25	26	8	38	1.85
49903884--49904094	117	1.8	117	87	2	316	24	12	21	42	1.87
49907501--49907676	33	5.3	32	79	6	124	28	4	46	21	1.71
49911594--49911667	32	2.3	32	83	0	94	29	8	17	44	1.77
49913927--49914007	27	3.0	26	70	21	67	38	2	1	58	1.20
49918631--49918688	26	2.2	26	96	0	107	41	25	13	18	1.88
49919564--49919613	21	2.5	20	83	9	66	12	2	22	64	1.37
49919683--49919707	12	2.1	12	100	0	50	40	16	8	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49920853--49920889	18	2.1	18	89	0	56	29	18	13	37	1.90
49923577--49923619	21	2.0	22	86	4	61	51	0	0	48	1.00
49923659--49923719	19	3.2	18	78	19	61	49	0	0	50	1.00
49925071--49925111	13	3.2	13	75	25	50	0	31	21	46	1.52
49928067--49928132	18	3.7	18	93	0	114	34	15	10	39	1.82
49928528--49928699	72	2.4	71	87	0	254	25	6	13	54	1.62
49930471--49930514	19	2.3	19	80	7	54	47	2	0	50	1.13
49930740--49930785	23	2.0	23	86	4	65	36	21	2	39	1.66
49930775--49930799	13	1.9	13	100	0	50	48	16	0	36	1.46
49939980--49940020	21	2.0	21	90	0	64	19	26	4	48	1.69
49948901--49948984	44	2.0	42	93	6	143	45	16	4	33	1.69
49954302--49954372	31	2.4	29	77	9	74	47	2	8	40	1.48
49961354--49961419	31	2.1	31	88	0	96	15	25	9	50	1.73
49961804--49961846	16	2.7	16	86	10	61	55	0	0	44	0.99
49963693--49963735	3	14.3	3	100	0	86	67	0	0	32	0.91
49965315--49965793	101	4.8	100	86	5	617	26	25	20	27	1.99
49965475--49965756	50	5.6	50	69	5	203	24	23	22	28	1.99
49965793--49966010	88	2.5	88	96	0	391	25	27	22	24	2.00
49967042--49967092	15	3.5	15	87	12	63	13	17	0	68	1.21
49967042--49967093	22	2.4	22	90	9	81	15	17	0	67	1.24
49967042--49967093	7	7.3	7	80	20	63	15	17	0	67	1.24
49967591--49967654	9	7.0	9	75	10	58	3	4	9	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49967592--49967653	11	5.8	10	79	9	61	3	4	8	83	0.88
49967595--49967645	10	4.7	11	81	9	52	3	3	9	82	0.93
49971020--49971077	3	19.3	3	100	0	116	67	0	0	32	0.91
49972654--49973122	101	4.7	101	86	3	572	26	25	19	28	1.99
49972755--49973107	50	7.0	50	67	5	237	26	26	19	27	1.99
49973121--49973644	88	6.0	88	93	0	832	27	26	20	25	1.99
49974367--49974435	8	8.3	9	70	23	53	42	0	1	56	1.08
49974367--49974430	15	4.0	15	75	8	56	40	0	1	57	1.08
49974365--49974414	20	2.4	22	86	10	77	40	0	0	60	0.97
49977534--49977592	7	8.3	7	82	17	77	15	16	0	67	1.23
49977530--49977591	15	4.3	15	90	10	94	12	17	0	69	1.19
49977530--49977603	15	5.1	14	87	11	62	13	17	0	68	1.20
49978090--49978147	12	4.7	12	79	14	57	3	6	6	82	0.93
49991246--49991315	33	2.1	33	81	5	79	62	11	14	11	1.54
49998513--49998625	48	2.4	48	81	0	136	30	22	15	31	1.95
49998608--49998813	96	2.1	96	83	1	252	27	21	16	34	1.95
49999764--49999809	19	2.3	21	85	7	60	41	0	0	58	0.98
50000991--50001068	39	2.0	39	87	0	111	41	24	6	28	1.79
50003245--50003295	25	2.0	25	85	7	68	19	17	29	33	1.95
50013787--50013921	18	8.0	17	69	19	86	41	0	1	56	1.14
50013802--50013860	26	2.3	25	85	8	82	40	0	1	57	1.09
50013815--50013870	15	4.0	15	73	17	57	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50013645--50013887	120	2.0	120	97	0	459	43	1	4	51	1.31
50030900--50030960	24	2.6	24	78	17	65	40	0	6	52	1.27
50032349--50032432	40	2.1	40	100	0	168	28	10	11	48	1.73
50037620--50037661	17	2.5	17	80	3	50	40	4	0	54	1.21
50037942--50037972	15	2.1	15	100	0	62	19	32	0	48	1.49
50043840--50043882	22	2.0	21	82	17	52	44	2	9	44	1.49
50046020--50046053	7	4.9	7	96	0	59	17	0	23	58	1.38
50049626--50049796	55	3.1	55	61	20	129	45	8	10	36	1.69
50050191--50050230	16	2.7	14	85	14	62	50	0	0	50	1.00
50059820--50060001	63	2.9	63	83	0	204	25	19	25	29	1.99
50070203--50070241	14	2.7	15	84	15	55	64	0	28	7	1.21
50071647--50071700	28	1.9	28	100	0	108	44	3	16	35	1.66
50088664--50088701	19	2.1	19	90	5	60	65	2	0	31	1.06
50097207--50097232	13	2.0	13	100	0	52	53	15	7	23	1.67
50104650--50104747	45	2.2	45	81	3	108	42	8	20	28	1.80
50104741--50104770	12	2.4	13	94	5	53	56	0	26	16	1.40
50104759--50104807	21	2.3	22	79	13	57	48	8	12	30	1.69
50106624--50106706	25	3.3	25	78	11	107	27	15	21	34	1.94
50121564--50121602	21	1.9	20	89	5	60	10	28	30	30	1.90
50126417--50126508	14	6.6	13	67	18	51	39	1	2	57	1.18
50126443--50126556	55	2.1	53	87	6	158	42	0	3	53	1.18
50135785--50135835	14	3.5	14	78	17	59	72	3	5	17	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50135826--50135886	25	2.4	24	86	13	79	73	6	14	4	1.20
50136909--50137026	12	9.8	12	68	18	50	70	3	18	7	1.26
50136926--50137029	18	5.6	18	75	5	82	71	3	18	6	1.24
50136922--50137029	6	17.7	6	70	6	74	71	3	18	6	1.23
50136990--50137027	13	2.8	13	82	17	51	73	0	18	7	1.06
50136991--50137041	21	2.4	21	74	6	50	74	1	17	5	1.11
50137044--50137106	33	1.9	33	84	12	85	55	6	25	12	1.60
50142102--50142163	31	2.0	31	84	6	81	38	8	6	46	1.59
50153596--50153631	18	2.0	18	100	0	72	22	22	33	22	1.97
50158113--50158293	25	7.3	25	70	10	129	36	25	12	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228