genome.fa.s23.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  139  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41766659--41766756	27	3.5	28	86	5	119	27	12	27	32	1.92
41766687--41766769	27	3.0	27	84	5	78	30	10	25	33	1.90
41778325--41778362	20	1.9	19	89	5	58	57	0	13	28	1.36
41786284--41786394	30	3.7	30	96	0	204	20	36	27	15	1.93
41803220--41803250	8	4.0	8	91	8	55	25	0	51	22	1.48
41803207--41803250	23	1.9	23	86	9	63	29	0	47	22	1.51
41803220--41803250	15	2.0	16	93	6	55	25	0	51	22	1.48
41810779--41810818	20	2.1	19	85	4	53	42	0	7	50	1.30
41815631--41815697	25	2.6	25	83	4	71	20	23	23	31	1.98
41818049--41818086	20	1.9	20	88	0	58	28	15	26	28	1.96
41828316--41828398	34	2.5	33	87	11	118	25	22	22	28	1.99
41834897--41835064	29	5.8	29	78	5	160	38	16	17	27	1.91
41836661--41836698	10	3.8	10	83	13	51	21	18	31	28	1.97
41836662--41836699	20	1.9	20	94	0	67	18	18	34	28	1.95
41839363--41839416	17	3.6	15	81	18	60	5	14	5	74	1.19
41839395--41839460	29	2.3	29	81	2	89	13	7	3	75	1.13
41839381--41839471	12	6.7	13	76	15	69	12	7	5	74	1.20
41841218--41841255	10	3.8	10	83	13	51	21	18	31	28	1.97
41841219--41841256	20	1.9	20	94	0	67	18	18	34	28	1.95
41841373--41841484	29	3.9	29	80	2	118	35	23	16	25	1.94
41841402--41841536	58	2.3	59	81	7	150	34	21	15	28	1.94
41841402--41841529	29	4.4	28	77	9	114	35	21	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41842022--41842055	17	2.0	17	88	0	50	29	0	38	32	1.58
41849718--41849802	38	2.2	38	83	4	100	37	5	8	48	1.58
41852218--41852253	18	1.9	18	88	5	54	5	33	0	61	1.19
41855937--41855978	21	2.0	21	86	9	59	28	21	14	35	1.92
41857518--41857637	60	2.0	60	93	0	204	24	12	15	48	1.79
41871958--41872018	26	2.4	26	81	13	81	39	11	9	39	1.75
41884602--41884646	24	1.9	24	86	4	65	42	15	11	31	1.82
41885919--41885969	3	17.0	3	100	0	102	33	0	0	66	0.92
41890390--41890414	13	1.9	13	100	0	50	32	16	8	44	1.76
41902081--41902182	30	3.4	30	84	9	113	37	13	28	20	1.91
41902139--41902205	30	2.2	31	84	5	84	37	13	20	28	1.91
41905590--41905637	25	1.9	25	87	8	71	43	22	16	16	1.87
41913189--41913249	32	1.9	32	86	0	86	40	14	6	37	1.72
41914265--41914344	42	1.9	42	86	0	115	33	41	10	15	1.80
41914306--41914374	29	2.4	28	82	2	84	33	36	11	18	1.87
41918867--41918964	42	2.3	42	82	3	117	20	23	28	27	1.99
41922814--41922868	22	2.5	22	84	0	74	40	23	21	14	1.90
41923385--41923433	19	2.5	20	86	3	73	24	12	0	63	1.29
41928160--41928229	36	1.9	37	82	8	90	40	4	0	55	1.19
41929783--41929865	41	2.0	41	97	0	157	20	15	36	27	1.93
41932513--41932555	21	2.0	21	100	0	86	32	9	27	30	1.88
41934833--41934885	25	2.1	26	82	3	63	58	7	1	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41937439--41937635	48	4.1	48	82	2	225	22	27	20	28	1.99
41939112--41939161	25	2.0	25	92	0	82	38	2	24	36	1.67
41941900--41941933	14	2.5	14	90	4	52	79	0	2	17	0.86
41946868--41947015	65	2.3	64	85	7	210	22	26	10	40	1.86
41947736--41947785	24	2.1	24	84	0	64	26	22	16	36	1.94
41948349--41948426	38	2.1	38	82	0	93	41	20	5	33	1.74
41953012--41953055	3	14.0	3	81	9	52	31	2	0	65	1.05
41953015--41953055	16	2.5	17	88	7	59	31	2	0	65	1.05
41953012--41953055	19	2.3	19	88	7	63	31	2	0	65	1.05
41957687--41957763	34	2.1	35	83	9	93	76	6	9	7	1.15
41957687--41957813	38	3.3	37	73	15	105	74	7	8	9	1.24
41957766--41957796	6	5.3	6	96	3	55	70	12	0	16	1.16
41959005--41959048	19	2.3	19	92	0	70	29	2	0	68	1.02
41961688--41961837	27	5.5	27	77	4	133	26	16	28	28	1.97
41961687--41961837	54	2.8	55	77	9	150	26	16	28	28	1.97
41969957--41969998	16	2.7	15	85	10	57	16	7	2	73	1.15
41971231--41971289	27	2.2	27	87	0	82	13	13	32	40	1.84
41971360--41971474	48	2.4	48	83	0	149	20	9	29	40	1.84
41982529--41982628	51	2.0	51	94	4	175	50	11	6	33	1.62
41983963--41983997	17	1.9	19	88	11	56	65	5	17	11	1.43
41991236--41991277	18	2.4	17	81	14	50	21	7	0	71	1.09
42005979--42006073	37	2.6	37	84	0	127	13	12	31	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42014895--42015010	61	1.9	61	89	0	178	33	2	11	52	1.51
42018013--42018038	13	2.0	13	100	0	52	30	7	23	38	1.83
42019144--42019270	43	2.9	43	75	14	127	22	17	27	33	1.96
42020248--42020447	23	8.7	23	85	1	240	27	11	20	41	1.85
42020246--42020435	69	2.8	69	85	3	265	27	10	19	43	1.83
42022643--42022701	20	3.0	20	73	11	50	20	6	3	69	1.26
42025223--42025279	24	2.4	24	90	0	87	17	17	31	33	1.93
42024959--42025552	171	3.4	170	90	4	872	17	22	27	32	1.97
42025391--42025450	24	2.5	24	86	7	86	16	18	33	31	1.93
42025593--42025651	24	2.5	24	85	0	82	16	20	32	30	1.95
42027566--42027608	21	2.0	21	90	4	68	53	2	0	44	1.13
42027631--42027672	9	4.9	9	80	8	52	57	0	0	42	0.99
42027631--42027698	25	2.8	25	70	22	63	51	0	0	48	1.00
42027712--42027748	16	2.3	17	81	13	51	59	0	2	37	1.12
42034435--42034738	43	7.1	43	82	4	294	28	26	16	27	1.97
42034432--42034732	128	2.3	128	82	3	374	28	26	16	27	1.97
42034432--42034734	86	3.5	86	82	4	344	28	27	16	27	1.97
42038354--42038407	21	2.5	20	77	16	56	35	38	0	25	1.57
42038409--42038449	21	2.0	21	85	4	57	36	39	4	19	1.73
42038946--42038987	15	2.7	16	82	14	52	52	2	0	45	1.13
42038955--42038996	15	2.9	15	82	10	52	52	0	0	47	1.00
42039040--42039106	15	4.7	14	73	19	50	59	1	0	38	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42039049--42039109	26	2.4	25	83	8	79	60	1	0	37	1.07
42039239--42039297	29	2.1	28	87	6	84	49	5	10	35	1.59
42039325--42039362	16	2.3	17	90	4	60	57	5	2	34	1.35
42042471--42042496	5	5.2	5	100	0	52	80	0	19	0	0.71
42043805--42044150	114	3.0	114	90	5	531	29	20	22	28	1.98
42043933--42044324	187	2.1	187	88	2	583	28	19	23	29	1.98
42044047--42044209	72	2.2	72	87	5	222	28	17	23	31	1.97
42044120--42044455	114	2.9	114	89	1	487	29	20	22	27	1.99
42043820--42044527	301	2.4	299	89	2	1091	28	20	22	28	1.98
42044348--42044577	72	3.2	71	89	3	352	27	18	23	30	1.98
42044355--42044576	73	3.1	72	90	3	347	27	17	22	31	1.97
42046023--42046232	43	4.9	43	78	4	201	28	30	18	22	1.98
42046023--42046222	86	2.3	85	82	6	224	30	31	18	21	1.96
42052096--42052180	42	2.0	41	84	2	107	41	0	11	47	1.40
42052153--42052295	9	16.7	9	68	15	79	32	4	19	43	1.70
42052143--42052223	25	3.3	25	81	8	94	35	2	13	48	1.56
42052179--42052333	69	2.2	69	88	0	220	31	5	20	42	1.74
42052777--42052919	9	16.7	9	68	15	79	32	4	19	43	1.70
42052766--42052847	25	3.3	25	81	6	94	36	2	13	47	1.56
42052803--42052957	69	2.2	69	88	0	220	31	5	20	42	1.74
42051709--42053581	624	3.0	623	98	0	3611	33	15	16	34	1.90
42053401--42054109	9	81.6	9	66	21	202	32	2	19	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42053427--42053696	69	3.9	69	94	0	432	30	3	22	43	1.70
42053443--42053697	34	7.4	34	75	9	221	30	3	22	43	1.71
42053729--42053865	34	3.8	34	66	16	87	30	2	18	48	1.60
42053361--42053930	25	22.5	26	65	19	123	32	2	19	45	1.64
42053938--42053988	21	2.4	21	87	6	68	37	3	19	39	1.70
42053984--42054029	7	6.6	7	78	16	51	28	0	10	60	1.30
42053984--42054106	15	7.9	15	68	18	65	31	1	14	52	1.52
42054026--42054083	21	2.8	21	84	7	82	36	3	17	43	1.66
42054252--42054393	61	2.3	61	83	0	194	49	4	4	41	1.44
42054323--42054369	15	3.1	15	90	6	76	51	6	0	42	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228