genome.fa.s23.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  174  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52141273--52141308	17	2.2	17	95	5	65	75	5	0	19	1.00
52142142--52142311	91	1.9	92	81	3	209	32	26	17	23	1.97
52142098--52142527	205	2.0	212	84	7	554	31	23	19	25	1.98
52143066--52143160	46	2.1	46	97	0	181	42	22	2	33	1.65
52147676--52147754	24	3.4	24	67	19	76	40	24	1	34	1.63
52147700--52147776	22	3.4	22	67	19	68	36	25	2	35	1.70
52147641--52147781	46	3.1	46	98	0	273	40	22	2	34	1.66
52147869--52147911	22	2.0	21	86	4	59	18	2	27	51	1.59
52148179--52148208	15	2.0	15	93	0	51	63	0	3	33	1.11
52148414--52148451	20	1.9	20	94	0	67	34	0	7	57	1.28
52148963--52149007	19	2.4	19	84	0	63	33	42	2	22	1.66
52149356--52149380	12	2.1	12	100	0	50	40	0	8	52	1.31
52150936--52151214	43	6.5	43	91	0	396	27	17	29	25	1.97
52153080--52153217	51	2.7	51	88	1	197	28	27	18	26	1.98
52164342--52164375	17	2.0	17	88	0	50	41	0	14	44	1.45
52165670--52165753	43	2.0	43	87	0	123	32	16	13	38	1.87
52175168--52175263	34	2.7	35	77	9	97	40	19	8	31	1.81
52176136--52176491	78	4.6	78	96	1	635	43	13	3	39	1.62
52183664--52183700	19	1.9	19	100	0	74	54	0	24	21	1.45
52185586--52185661	40	1.9	40	86	0	107	27	13	22	36	1.91
52194174--52194217	21	2.0	23	82	8	56	50	20	4	25	1.67
52195063--52195168	51	2.1	50	91	1	167	37	17	4	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52195383--52195493	40	2.8	40	82	4	127	41	21	17	19	1.90
52195566--52195678	41	2.8	40	85	2	154	19	23	23	32	1.97
52196758--52196813	7	8.1	7	80	4	51	17	1	41	39	1.60
52201404--52201447	20	2.2	20	100	0	88	13	13	13	59	1.62
52201445--52201535	43	2.1	43	97	0	173	18	16	34	30	1.93
52209389--52209539	74	2.0	74	100	0	302	39	5	24	30	1.77
52209889--52209934	16	2.8	16	84	15	67	71	0	2	26	0.97
52210136--52210543	42	9.8	42	86	6	496	32	19	22	25	1.98
52210142--52210504	124	2.9	125	88	4	529	32	19	22	24	1.97
52210142--52210543	83	4.8	82	86	7	462	31	19	22	25	1.98
52210865--52210916	21	2.5	22	90	9	90	3	30	17	48	1.65
52216479--52216661	9	21.1	9	69	11	123	30	1	21	45	1.62
52216479--52216642	25	6.7	25	69	15	92	30	1	21	46	1.59
52216582--52216635	16	3.2	16	80	10	54	25	0	22	51	1.48
52216727--52216769	16	2.7	16	92	0	68	32	2	16	48	1.58
52216858--52217535	149	4.5	149	95	2	1207	47	4	7	40	1.53
52216858--52217535	76	9.1	76	94	3	1189	47	4	7	40	1.53
52216858--52217535	299	2.3	301	96	1	1258	47	4	7	40	1.53
52217659--52217797	67	2.1	67	95	2	253	45	13	4	36	1.64
52217857--52217892	16	2.2	16	95	0	63	52	8	11	27	1.65
52220486--52220561	21	3.6	21	79	8	75	44	39	0	15	1.47
52220510--52220574	7	9.3	7	83	6	87	43	43	0	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52220505--52220579	14	5.4	14	79	6	71	45	41	0	13	1.43
52220505--52220583	21	3.7	21	83	6	88	44	43	0	12	1.42
52221354--52221392	20	1.9	19	90	10	60	51	0	0	48	1.00
52221498--52221533	18	2.0	18	89	10	56	69	5	0	25	1.10
52221502--52221542	18	2.2	19	86	4	57	70	4	0	24	1.06
52221643--52222069	114	3.8	114	97	0	793	28	23	18	30	1.97
52221643--52222159	228	2.3	228	89	3	756	29	24	17	29	1.97
52222126--52222395	114	2.4	113	80	7	278	29	23	18	28	1.98
52221758--52222399	228	2.8	229	79	7	506	28	23	17	30	1.97
52239607--52239639	5	6.4	5	96	3	57	18	3	0	78	0.87
52244255--52244309	27	2.0	27	92	0	92	38	20	21	20	1.94
52244437--52244556	27	4.5	27	77	4	127	25	12	23	39	1.89
52244449--52244553	53	2.0	54	84	1	140	25	14	20	39	1.91
52259460--52259593	39	3.4	39	77	10	116	39	21	19	19	1.93
52259633--52259909	41	6.8	40	83	5	304	20	22	24	32	1.98
52259633--52259909	123	2.3	123	84	5	355	20	22	24	32	1.98
52260806--52260848	14	3.0	15	83	16	56	25	0	34	39	1.56
52261913--52262031	7	15.9	7	72	13	67	20	2	45	31	1.64
52261935--52262031	23	4.3	23	80	6	108	20	3	44	31	1.67
52261913--52262031	46	2.6	45	90	2	177	20	2	45	31	1.64
52261892--52262032	7	19.0	7	70	13	59	20	2	43	33	1.64
52265418--52265477	33	1.9	30	80	12	68	33	8	15	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52265559--52265591	10	3.1	11	86	8	50	33	9	21	36	1.85
52265626--52265717	13	6.9	13	71	18	73	45	8	3	42	1.51
52265609--52265864	40	6.5	39	78	11	197	44	10	1	42	1.50
52265754--52265844	22	4.6	21	72	20	72	43	13	0	42	1.43
52265758--52265819	17	3.6	17	84	4	70	46	12	0	40	1.42
52265758--52265846	18	4.8	18	79	14	101	46	12	0	41	1.41
52265949--52266004	27	2.1	27	96	0	103	42	7	3	46	1.48
52265946--52266246	121	2.5	120	91	3	417	41	8	5	44	1.58
52266222--52266273	27	1.9	27	100	0	104	42	7	1	48	1.43
52266330--52266608	25	11.2	25	75	7	210	46	18	2	31	1.64
52266330--52266688	9	43.0	9	64	18	143	46	19	2	31	1.64
52266445--52266630	75	2.5	74	92	5	304	46	18	2	33	1.61
52272069--52272239	66	2.6	65	85	4	218	40	18	27	12	1.87
52272210--52272322	21	5.4	21	78	0	91	37	15	40	6	1.73
52272650--52272805	43	3.6	43	75	10	158	24	15	31	28	1.95
52272631--52272880	86	2.9	86	84	2	315	24	16	30	29	1.96
52272650--52272861	43	4.9	43	74	6	144	22	16	31	29	1.96
52272864--52272983	43	2.8	42	80	1	123	27	29	21	21	1.99
52273123--52273166	22	2.0	22	95	0	79	43	27	20	9	1.82
52274647--52274698	15	3.5	15	76	10	61	13	13	44	28	1.82
52277795--52277963	29	5.8	29	84	0	221	21	28	11	37	1.89
52277784--52277963	87	2.1	87	89	0	270	22	27	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52279780--52280009	43	5.3	43	86	0	298	32	32	16	18	1.93
52280210--52280268	18	3.3	18	63	13	50	40	10	6	42	1.65
52284334--52284365	16	2.0	16	100	0	64	31	18	18	31	1.95
52284621--52284666	21	2.2	21	84	7	58	23	2	50	23	1.61
52285139--52285209	33	2.2	33	86	0	97	33	43	5	16	1.72
52284969--52285290	116	2.7	116	80	12	307	42	27	3	27	1.70
52286051--52286098	18	2.7	17	90	6	69	43	0	6	50	1.27
52286529--52286770	41	5.9	41	87	0	340	28	27	21	23	1.99
52286818--52286899	39	2.1	38	84	8	103	25	18	15	40	1.90
52293956--52293983	12	2.3	12	100	0	56	35	14	10	39	1.81
52293990--52294123	12	10.7	12	72	13	83	26	14	8	50	1.71
52294895--52294948	22	2.5	20	82	11	63	25	1	0	72	0.95
52302954--52303088	62	2.2	62	82	0	153	22	12	13	51	1.74
52314713--52314737	5	5.0	5	100	0	50	20	0	0	80	0.72
52316222--52316336	30	3.8	30	95	0	185	47	6	20	25	1.74
52320915--52321022	15	7.2	15	67	12	60	46	7	20	25	1.77
52320911--52321032	30	4.0	30	91	1	190	46	6	21	25	1.75
52322755--52322878	5	24.8	5	93	0	203	40	20	0	38	1.58
52324133--52324178	16	2.7	17	90	6	67	69	4	19	6	1.28
52336722--52336763	15	2.7	16	78	14	52	19	11	2	66	1.34
52354957--52354997	18	2.3	18	83	8	57	53	4	0	41	1.22
52362879--52362914	12	3.0	12	83	0	54	63	0	19	16	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52362880--52362916	18	2.1	18	89	0	56	67	0	16	16	1.23
52363060--52363120	26	2.4	26	86	2	79	42	13	11	32	1.79
52376324--52376359	12	3.0	12	83	0	54	63	0	19	16	1.30
52376325--52376361	18	2.1	18	89	0	56	67	0	16	16	1.23
52376503--52376563	26	2.4	26	86	2	79	42	13	11	32	1.79
52378121--52378173	27	2.0	27	88	0	79	32	13	7	47	1.70
52378192--52378224	17	1.9	18	88	11	52	42	3	12	42	1.57
52380484--52380591	57	1.9	55	84	3	144	43	6	20	29	1.77
52380605--52380630	7	3.7	7	100	0	52	46	11	26	15	1.80
52385065--52385098	10	3.5	10	84	8	52	32	8	0	58	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228