genome.fa.s23.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  110  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32040992--32041034	17	2.5	17	96	0	77	4	11	4	79	1.04
32040997--32041070	15	4.9	15	83	9	80	6	12	1	79	0.98
32041781--32041861	25	3.3	24	86	8	110	27	1	2	69	1.09
32041793--32041871	25	3.2	23	82	10	77	27	3	2	65	1.22
32042007--32042079	28	2.8	25	78	13	83	30	8	2	58	1.41
32042105--32042152	23	2.1	23	84	0	60	16	6	12	64	1.46
32054608--32054651	23	1.9	22	82	17	54	38	22	0	38	1.55
32054750--32054870	46	2.6	46	93	0	215	35	25	18	20	1.95
32054750--32054871	23	5.3	23	86	0	181	35	25	18	21	1.95
32056604--32056723	56	2.1	56	98	0	231	45	9	23	22	1.81
32057853--32058077	40	5.7	40	85	5	287	24	21	28	25	1.99
32057853--32058110	119	2.2	119	81	6	283	25	21	27	25	1.99
32064546--32064665	56	2.1	56	95	0	213	44	8	23	24	1.80
32065795--32066019	40	5.7	40	85	5	287	24	21	28	25	1.99
32065795--32066052	119	2.2	119	81	6	283	25	21	27	25	1.99
32072489--32072607	55	2.1	56	96	1	222	44	9	23	22	1.81
32073736--32073960	40	5.7	40	85	5	278	24	21	28	25	1.99
32073736--32073993	119	2.2	119	81	6	283	25	20	27	25	1.99
32080424--32080542	55	2.1	56	96	1	222	44	9	23	22	1.81
32081664--32081887	40	5.7	39	85	7	283	24	22	28	25	1.99
32108380--32108603	47	4.7	47	86	4	299	31	9	31	27	1.88
32111488--32111518	16	1.9	16	93	0	53	45	12	12	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32119634--32119733	27	3.7	27	79	2	94	22	22	13	43	1.87
32119632--32119746	53	2.2	53	85	1	149	21	22	14	40	1.90
32119661--32119755	27	3.6	27	84	8	95	20	20	15	44	1.87
32124720--32124800	42	1.9	43	87	2	119	24	22	37	16	1.93
32134104--32134128	13	1.9	13	100	0	50	8	0	24	68	1.16
32135209--32135241	12	2.8	12	90	4	50	36	3	9	51	1.49
32135103--32135309	112	1.8	111	89	2	315	42	4	14	39	1.65
32135647--32135796	41	3.7	41	89	1	212	28	17	28	26	1.97
32141473--32141497	13	1.9	13	100	0	50	8	0	24	68	1.16
32142577--32142609	12	2.8	12	90	4	50	36	3	9	51	1.49
32142471--32142674	112	1.8	112	95	0	372	41	4	14	39	1.66
32143015--32143164	41	3.7	41	88	0	219	29	18	27	25	1.98
32148385--32148467	28	3.0	28	68	7	69	39	18	16	25	1.91
32155568--32155609	21	2.0	21	86	9	59	47	2	11	38	1.53
32156647--32156775	43	3.0	42	78	10	127	24	19	27	29	1.98
32161729--32161906	27	6.6	27	83	3	205	26	15	28	29	1.96
32161730--32161885	82	1.9	81	88	3	233	26	15	28	29	1.96
32161726--32161906	82	2.2	81	83	2	229	27	15	27	29	1.96
32163271--32163325	25	2.3	23	78	6	56	30	18	29	21	1.97
32167219--32167370	80	1.9	80	89	2	234	35	13	32	18	1.89
32167213--32167356	40	3.6	40	87	0	198	34	13	34	17	1.89
32177639--32177689	23	2.2	23	89	0	75	23	27	13	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32178302--32178365	9	7.1	9	92	0	101	39	28	10	21	1.87
32178302--32178365	18	3.6	18	95	0	119	39	28	10	21	1.87
32178445--32178497	18	2.9	18	82	2	70	7	3	45	43	1.50
32179520--32179547	11	2.5	11	100	0	56	35	0	0	64	0.94
32183285--32183317	17	1.9	17	100	0	66	36	3	6	54	1.41
32186156--32186841	342	2.0	342	89	1	1061	39	16	21	23	1.92
32188053--32188296	122	2.0	122	100	0	488	35	10	13	40	1.80
32191677--32191812	63	2.2	63	98	0	263	38	16	4	39	1.69
32193172--32193205	17	2.1	17	88	5	52	35	20	0	44	1.52
32196201--32196376	69	2.6	69	81	3	203	25	22	16	35	1.95
32204991--32205066	27	2.8	27	93	0	125	21	25	31	22	1.98
32205988--32206019	15	2.1	15	100	0	64	28	6	12	53	1.62
32212553--32212584	6	5.2	6	96	3	55	65	0	18	15	1.27
32212744--32212802	25	2.4	25	97	0	109	37	8	16	37	1.80
32214966--32215011	10	4.5	10	86	2	65	28	2	21	47	1.62
32222079--32222131	18	2.9	18	77	8	54	60	1	1	35	1.19
32222343--32222381	22	1.9	20	85	15	53	51	12	0	35	1.40
32222512--32222550	5	7.6	5	82	5	51	41	17	0	41	1.50
32227007--32227113	48	2.2	48	96	1	198	51	7	11	29	1.65
32229331--32229362	15	2.1	15	100	0	64	18	6	6	68	1.32
32233059--32233117	26	2.3	26	87	0	82	42	15	11	30	1.83
32239500--32239568	26	2.7	26	86	4	95	24	21	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32244594--32244636	20	2.1	21	86	4	61	39	23	11	25	1.88
32245405--32245491	45	1.9	46	83	2	113	34	21	3	40	1.71
32247672--32247712	20	2.2	18	86	8	55	48	0	2	48	1.14
32252390--32252450	11	5.9	11	71	21	51	59	0	1	39	1.08
32252374--32252481	40	2.6	41	91	5	173	62	0	1	36	1.06
32252417--32252490	31	2.4	30	89	10	107	63	0	2	33	1.09
32255205--32255252	24	2.0	24	92	8	80	37	6	4	52	1.46
32255461--32255508	15	3.1	15	77	19	53	33	6	0	60	1.22
32257362--32257392	12	2.6	12	89	0	53	25	0	0	74	0.82
32282514--32282548	11	3.2	11	95	0	61	62	0	8	28	1.24
32284043--32284094	27	1.9	27	88	0	77	21	32	26	19	1.97
32284200--32284261	4	15.5	4	78	18	67	74	0	24	1	0.91
32284200--32284261	18	3.6	17	78	20	58	74	0	24	1	0.91
32290655--32290856	105	1.9	108	84	7	275	60	13	1	23	1.41
32291344--32291382	20	1.9	19	90	10	60	48	0	5	46	1.24
32291455--32291488	13	2.5	14	85	9	52	26	0	0	73	0.83
32293116--32293225	10	10.8	10	72	21	61	57	2	0	39	1.19
32293100--32293185	20	4.4	19	77	11	84	59	1	1	38	1.13
32293100--32293185	31	2.9	30	83	13	106	59	1	1	38	1.13
32294103--32294355	38	6.7	37	72	18	122	35	2	1	60	1.21
32294159--32294203	19	2.4	18	85	3	54	33	4	4	57	1.38
32294104--32294356	9	27.0	9	71	18	144	35	2	1	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32294264--32294308	21	2.1	22	87	4	65	26	2	2	68	1.12
32294585--32294632	5	9.6	5	86	0	60	45	2	12	39	1.54
32294901--32294942	6	7.0	6	100	0	84	16	0	33	50	1.46
32297021--32297077	18	2.9	19	73	17	55	24	5	19	50	1.68
32303432--32303733	96	3.2	94	81	3	293	36	3	18	41	1.69
32303505--32303733	96	2.4	96	86	3	311	38	3	19	38	1.69
32303766--32304308	126	4.3	126	88	0	818	32	18	22	27	1.97
32309734--32309762	11	2.6	11	100	0	58	37	0	31	31	1.58
32309731--32309796	22	2.9	22	76	15	62	46	0	27	25	1.53
32311018--32311073	23	2.4	23	82	5	69	33	7	19	39	1.79
32311066--32311099	7	5.0	7	96	3	61	14	11	29	44	1.81
32315195--32315235	4	10.2	4	83	0	55	73	2	2	21	1.07
32331949--32332007	21	2.9	19	75	9	55	52	1	6	38	1.38
32337322--32337563	43	5.6	44	78	8	203	28	14	23	33	1.94
32337317--32337532	44	5.0	43	76	12	178	27	15	23	33	1.95
32337317--32337560	85	2.8	84	77	12	235	29	14	23	32	1.94
32347550--32347605	19	3.0	20	76	10	64	39	42	7	10	1.67
32347574--32347616	20	2.2	20	83	8	52	39	46	6	6	1.58
32348646--32348670	9	2.8	9	100	0	50	24	0	8	68	1.16
32351326--32351368	23	1.9	23	90	4	70	62	0	0	37	0.95
32351336--32351382	18	2.5	20	86	10	71	63	0	0	36	0.94
32351337--32351446	19	5.8	19	68	11	64	60	1	2	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32351589--32351653	19	3.4	19	75	10	60	30	9	3	56	1.46
32351658--32351739	8	9.2	8	74	17	56	28	3	1	67	1.15
32351658--32351739	17	4.6	17	79	10	74	28	3	1	67	1.15
32351710--32351776	28	2.4	28	85	5	82	29	1	1	67	1.09
32351701--32351766	8	7.5	8	77	13	51	27	3	1	68	1.13
32351662--32351758	17	5.4	17	69	13	52	28	3	1	67	1.13
32351664--32351772	28	4.0	28	72	14	75	30	2	0	66	1.12
32351658--32351823	9	18.3	9	67	16	76	30	2	1	65	1.16
32351859--32352042	99	1.9	99	82	7	234	34	10	18	35	1.86
32352162--32352193	12	2.6	12	95	5	55	34	15	0	50	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228