genome.fa.s23.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  153  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46045347--46045391	18	2.5	18	88	0	72	15	48	6	28	1.70
46046245--46046273	3	9.7	3	100	0	58	68	31	0	0	0.89
46046340--46046378	20	2.0	21	85	10	55	66	10	0	23	1.22
46046637--46046677	20	2.0	20	95	0	73	58	0	7	34	1.26
46050132--46050189	28	2.1	28	100	0	116	31	3	13	51	1.58
46050429--46050520	43	2.2	42	83	9	109	27	20	25	27	1.99
46050445--46050586	43	3.3	43	88	2	178	21	16	28	34	1.94
46050574--46050680	34	3.1	34	94	0	178	30	19	16	32	1.94
46062366--46062496	43	3.0	44	80	8	137	32	26	17	23	1.97
46062604--46062676	34	2.1	35	82	2	85	45	15	6	32	1.72
46063069--46063141	34	2.1	35	82	2	85	45	15	6	32	1.72
46062379--46063309	465	2.0	465	99	0	1844	32	21	13	32	1.93
46068031--46068099	37	1.9	35	88	5	102	31	4	4	59	1.37
46072946--46072986	21	2.0	21	81	18	50	31	19	26	21	1.97
46074094--46074121	13	2.2	13	100	0	56	25	25	35	14	1.93
46077218--46077299	31	2.7	30	81	5	94	54	3	1	40	1.26
46077258--46077284	12	2.2	12	100	0	54	48	0	0	51	1.00
46077218--46077301	29	2.8	29	82	7	89	53	3	1	41	1.26
46087457--46087531	28	2.6	30	79	8	84	36	25	21	17	1.95
46087587--46087632	19	2.5	19	92	3	76	36	4	13	45	1.63
46095012--46095135	25	5.0	25	70	11	94	29	18	25	26	1.98
46095012--46095135	50	2.5	50	86	1	169	29	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46107221--46107286	33	2.0	33	88	8	100	13	42	3	40	1.60
46107493--46107525	12	2.8	12	86	13	50	0	18	0	81	0.68
46107494--46107525	13	2.5	13	95	5	57	0	15	0	84	0.63
46116856--46117029	76	2.3	77	91	5	289	56	8	7	27	1.56
46116944--46117124	93	2.0	92	87	5	262	58	9	6	25	1.54
46119506--46119757	103	2.5	102	86	7	359	53	16	0	28	1.46
46123329--46123369	17	2.5	17	88	4	57	46	0	0	53	1.00
46123257--46123553	119	2.5	121	93	3	503	41	1	5	51	1.33
46123420--46123473	18	3.1	17	84	7	56	44	0	3	51	1.19
46123497--46123567	23	3.1	22	80	11	65	39	0	5	54	1.24
46123512--46123567	23	2.4	23	79	8	69	41	0	5	53	1.24
46124064--46124117	16	3.4	16	89	0	81	24	33	3	38	1.73
46124163--46124207	18	2.5	19	79	17	51	64	17	0	17	1.29
46124375--46124489	60	1.9	60	96	0	212	53	13	0	33	1.46
46124657--46124697	3	14.3	3	82	10	50	2	26	0	70	0.99
46124645--46124710	14	5.0	14	76	12	52	1	30	0	68	0.99
46124657--46124710	17	3.2	17	76	5	56	1	31	0	66	1.02
46124999--46125049	25	2.0	24	85	7	66	60	0	0	39	0.97
46125016--46125054	21	1.9	21	89	5	62	56	0	0	43	0.99
46125101--46125137	17	2.2	17	100	0	74	32	16	5	45	1.70
46126889--46126977	44	2.0	44	97	0	169	23	13	19	43	1.86
46131510--46131654	74	2.0	74	87	2	211	26	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46131561--46132339	114	6.8	113	87	1	1065	23	22	27	26	1.99
46132246--46132417	73	2.4	73	90	0	272	26	22	25	25	2.00
46132678--46132749	15	4.9	15	72	5	58	20	0	44	34	1.52
46132719--46132769	22	2.3	23	82	3	59	27	1	43	27	1.66
46132934--46132980	14	3.3	15	82	8	62	27	0	31	40	1.57
46132967--46133007	21	2.0	20	90	4	64	21	0	39	39	1.54
46133003--46133047	14	3.1	14	81	15	56	22	0	46	31	1.52
46132987--46133065	14	5.4	16	76	21	50	26	0	37	35	1.57
46133843--46134052	103	2.0	105	88	1	316	47	10	12	30	1.75
46136764--46136865	45	2.3	45	100	0	204	21	11	20	46	1.83
46137707--46137951	43	5.7	43	78	8	221	24	17	28	29	1.97
46145817--46145860	20	2.3	20	88	7	65	50	9	4	36	1.55
46150396--46150467	36	2.0	36	91	2	119	31	27	8	31	1.86
46152250--46152321	36	2.0	36	89	2	110	33	27	8	30	1.86
46162834--46163119	30	9.6	30	81	11	224	31	8	16	43	1.77
46162863--46162948	26	3.2	26	78	12	91	31	8	15	45	1.75
46162846--46163119	60	4.6	60	84	3	315	31	8	16	43	1.77
46162834--46163119	90	3.2	89	85	3	362	31	8	16	43	1.77
46165377--46165516	49	2.9	49	90	4	228	32	25	15	27	1.95
46168560--46168598	18	2.2	17	86	13	53	28	0	23	48	1.51
46168824--46168876	23	2.3	23	93	0	88	22	20	28	28	1.99
46180974--46181025	23	2.3	22	75	21	54	11	21	1	65	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46181019--46181057	18	2.2	18	90	0	60	12	20	2	64	1.40
46192848--46192911	31	2.1	31	85	11	87	37	1	14	46	1.53
46193094--46193140	21	2.3	21	85	10	62	36	0	8	55	1.31
46193171--46193201	16	1.9	16	100	0	62	41	0	0	58	0.98
46193126--46193241	53	2.2	52	81	9	128	44	0	5	49	1.30
46193359--46193451	45	2.1	44	92	6	152	36	25	4	33	1.76
46193433--46193504	16	4.5	16	83	0	99	27	26	5	40	1.78
46206771--46206804	17	2.0	17	88	0	50	32	20	14	32	1.93
46210180--46210221	15	2.7	15	92	3	66	50	19	14	16	1.79
46212390--46212450	19	3.3	18	73	13	52	47	4	4	42	1.46
46215346--46215395	25	2.0	24	84	3	64	18	26	22	34	1.96
46215517--46215626	25	4.4	25	77	4	71	20	26	21	31	1.98
46217579--46217666	25	3.6	25	70	13	74	22	29	20	27	1.99
46218691--46218723	12	2.8	12	90	0	57	18	21	48	12	1.80
46224247--46224329	42	2.0	42	90	0	130	22	26	36	14	1.93
46224939--46224982	17	2.6	17	96	0	79	20	40	15	22	1.90
46225509--46225570	19	3.2	18	84	15	56	72	1	14	11	1.19
46225526--46225574	11	4.6	11	78	21	52	73	0	14	12	1.10
46226970--46227131	80	2.0	80	85	2	218	29	12	9	47	1.74
46227686--46227728	14	3.1	14	80	3	52	62	2	0	34	1.08
46235832--46235872	19	2.1	20	86	4	57	31	9	2	56	1.45
46236043--46236085	19	2.3	19	88	4	70	44	9	0	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46236043--46236085	9	4.7	9	88	5	68	44	9	0	46	1.35
46236031--46236085	28	1.9	28	88	3	83	47	9	0	43	1.35
46236542--46236685	76	1.9	76	85	2	200	29	20	20	30	1.97
46243926--46243977	25	2.1	26	89	7	81	59	7	0	32	1.26
46248891--46248942	24	2.2	24	92	0	86	51	9	1	36	1.46
46249601--46249641	19	2.3	18	88	12	66	39	2	4	53	1.35
46249743--46249799	29	2.0	29	86	6	80	40	17	12	29	1.86
46253194--46253348	37	4.0	37	80	12	177	27	20	15	36	1.93
46253270--46253488	52	4.5	46	87	7	267	26	22	15	35	1.93
46253309--46253482	52	3.3	52	91	1	276	25	23	14	36	1.93
46258795--46258833	11	3.0	14	78	21	57	30	0	0	69	0.89
46258767--46259164	26	15.1	26	71	13	226	29	7	3	59	1.42
46259018--46259066	22	2.3	22	86	10	66	28	4	4	63	1.31
46259117--46259165	24	2.1	23	88	3	71	28	10	4	57	1.50
46268988--46269023	19	1.9	20	88	11	58	63	0	0	36	0.94
46268991--46269037	19	2.3	21	78	14	53	59	4	2	34	1.29
46269358--46269391	8	4.4	8	88	7	52	23	0	0	76	0.79
46269353--46269391	15	2.5	15	87	4	51	25	0	0	74	0.82
46270649--46270699	22	2.3	22	96	3	93	27	23	7	41	1.82
46270654--46270705	22	2.2	24	86	13	72	28	23	7	40	1.82
46279702--46279736	15	2.4	14	90	4	52	71	0	2	25	1.00
46280822--46280935	55	2.1	55	98	0	219	43	8	14	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46282591--46282683	43	2.1	43	84	2	114	26	16	25	31	1.96
46286922--46287043	41	2.9	42	78	8	122	28	17	12	41	1.85
46286949--46287054	40	2.5	40	83	7	104	25	17	15	41	1.89
46290464--46290514	18	2.9	18	79	2	59	80	5	5	7	1.02
46291915--46291991	35	2.2	35	81	9	86	68	2	9	19	1.28
46298461--46298514	25	2.3	25	75	18	62	53	7	3	35	1.47
46299170--46299237	31	2.2	31	100	0	136	58	2	10	27	1.45
46305458--46305482	4	6.2	4	100	0	50	24	0	0	76	0.80
46305672--46305732	3	20.3	3	89	0	50	36	9	0	54	1.34
46310753--46310795	6	7.2	6	82	10	52	76	0	20	2	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228