genome.fa.s23.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  200  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58733794--58733823	14	2.1	14	93	0	51	16	30	36	16	1.91
58736044--58736133	18	5.0	18	90	0	144	26	21	17	34	1.95
58749789--58749847	8	7.2	8	73	16	50	15	5	0	79	0.89
58749791--58749847	17	3.5	17	80	4	64	15	5	0	78	0.91
58749791--58749860	32	2.2	32	82	12	83	17	5	0	77	0.96
58757573--58757619	22	2.2	22	84	3	60	38	0	4	57	1.18
58760141--58760192	27	1.9	27	92	0	86	23	7	19	50	1.73
58763315--58763355	20	2.0	21	85	9	57	14	4	12	68	1.36
58763876--58763902	14	1.9	14	100	0	54	74	0	0	25	0.83
58764780--58764849	29	2.4	29	79	9	72	57	5	4	32	1.42
58767202--58767273	36	2.0	36	91	0	117	25	0	47	27	1.52
58770482--58770679	72	2.8	71	75	10	199	26	19	24	29	1.99
58771300--58771341	7	5.9	7	78	15	50	16	2	50	30	1.58
58771299--58771341	23	1.9	22	90	4	68	16	2	48	32	1.58
58771502--58771543	13	3.3	13	80	6	50	16	2	30	50	1.58
58771672--58771760	14	6.4	14	71	11	58	21	1	30	47	1.58
58771675--58771756	21	3.9	19	74	13	56	21	1	30	46	1.59
58772194--58772433	115	2.1	114	91	1	381	30	18	19	31	1.96
58772295--58773005	261	2.7	261	91	1	1131	27	18	20	33	1.96
58773562--58773673	34	3.3	34	96	0	197	29	11	14	44	1.80
58775060--58775091	9	3.6	9	91	0	55	46	0	0	53	1.00
58775116--58775174	23	2.4	25	83	11	86	33	6	1	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58775380--58775505	9	14.0	9	82	0	162	47	16	0	35	1.47
58775368--58775510	27	5.3	27	96	0	268	48	14	0	36	1.44
58781010--58781155	42	3.7	40	76	15	135	35	21	41	2	1.65
58781046--58781162	33	3.3	33	77	19	135	37	20	41	0	1.59
58781023--58781132	54	2.0	54	85	3	150	37	20	40	1	1.64
58781075--58781153	21	3.8	21	93	0	140	35	21	41	1	1.61
58781138--58781177	12	3.3	12	85	0	53	42	15	37	5	1.68
58781595--58781909	42	7.4	42	82	6	334	27	20	20	30	1.98
58781597--58781909	85	3.7	85	84	6	361	27	21	20	30	1.98
58781597--58781909	84	3.7	84	84	6	373	27	21	20	30	1.98
58781981--58782023	22	2.0	22	90	0	68	48	27	13	9	1.73
58786384--58786518	42	3.2	42	80	10	150	24	17	15	42	1.87
58790177--58790214	19	2.0	19	94	0	67	28	26	7	36	1.84
58791461--58791518	31	1.9	29	82	6	71	36	3	5	55	1.39
58791548--58791602	17	3.4	16	80	12	60	43	1	0	54	1.10
58792087--58792113	14	1.9	14	100	0	54	66	7	11	14	1.43
58807843--58808013	24	7.3	23	68	10	96	24	17	17	40	1.91
58807806--58808032	94	2.4	94	88	1	294	25	17	15	41	1.89
58807806--58807999	47	4.1	47	95	0	334	24	18	15	42	1.88
58808008--58808067	25	2.5	23	86	5	75	26	18	16	38	1.92
58807958--58808139	71	2.5	71	82	4	206	28	13	18	39	1.89
58807817--58808137	23	13.6	23	69	13	152	27	16	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58808430--58808460	2	15.5	2	100	0	62	48	0	0	51	1.00
58809777--58809807	16	1.9	16	93	0	53	16	9	3	70	1.26
58816409--58816495	11	8.3	11	65	19	51	43	2	29	24	1.66
58816385--58816484	51	2.0	51	88	4	148	45	2	27	26	1.65
58816446--58816495	22	2.3	22	89	6	75	42	2	32	24	1.66
58880541--58880702	81	2.0	81	95	0	288	41	14	22	22	1.89
58881212--58881243	16	2.0	16	93	0	55	75	3	0	21	0.95
58881829--58881922	21	4.7	21	71	20	60	32	3	2	61	1.23
58881882--58881958	27	2.8	26	79	16	77	29	5	1	63	1.24
58895729--58895825	49	2.0	50	87	2	142	31	25	15	26	1.96
58914468--58914531	27	2.2	29	83	8	78	39	9	34	17	1.82
58920385--58920452	10	7.1	10	72	12	54	63	1	1	33	1.13
58923231--58923276	18	2.5	19	82	13	60	71	6	6	15	1.27
58923394--58923457	9	6.4	10	75	21	55	57	0	3	39	1.14
58923407--58923446	21	1.9	21	89	0	62	57	0	2	40	1.12
58923394--58923457	20	3.2	20	74	14	69	57	0	3	39	1.14
58923394--58923467	11	6.9	11	75	14	66	58	0	2	39	1.13
58923633--58923743	3	37.3	3	72	16	63	64	1	6	27	1.27
58924365--58924393	15	1.9	15	100	0	58	82	0	10	6	0.83
58924365--58924402	15	2.4	17	86	8	53	81	0	10	7	0.87
58924363--58924395	15	2.2	15	88	0	57	84	0	9	6	0.76
58924946--58924990	22	2.0	24	86	8	67	46	4	11	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58924960--58925157	102	1.9	103	83	13	260	45	6	5	42	1.53
58928297--58928370	20	3.9	19	76	13	64	66	1	1	31	1.09
58928389--58928436	21	2.3	21	85	0	69	60	0	2	37	1.09
58930267--58930311	22	2.0	24	86	8	67	46	4	11	37	1.60
58933617--58933672	20	2.8	20	78	2	60	60	1	1	35	1.17
58933732--58933785	9	5.9	9	77	12	56	55	1	1	40	1.21
58933724--58933758	18	1.9	18	88	0	52	60	0	0	40	0.97
58933814--58933862	22	2.3	21	79	10	55	53	4	2	40	1.32
58938958--58938990	14	2.4	14	90	5	50	72	0	0	27	0.85
58938960--58938990	11	2.8	11	95	0	53	70	0	0	29	0.87
58938990--58939044	21	2.5	22	85	5	76	60	21	10	7	1.55
58939309--58939479	60	2.8	61	78	6	166	21	21	18	39	1.93
58939370--58939497	63	2.1	61	83	2	157	21	17	17	43	1.87
58943449--58943521	36	2.1	35	87	5	103	30	13	6	49	1.68
58947111--58947139	3	9.7	3	100	0	58	0	34	0	65	0.93
58954984--58955018	18	1.9	18	88	0	52	60	0	17	22	1.37
58955306--58955335	15	1.9	16	93	6	53	30	0	3	66	1.07
58957833--58957929	20	5.2	18	71	15	65	53	3	1	42	1.23
58957870--58957946	35	2.2	36	90	2	120	53	2	1	42	1.23
58957873--58957932	9	6.5	10	70	22	51	55	1	0	43	1.10
58958400--58958433	15	2.2	16	94	5	61	73	0	2	23	0.97
58961946--58962071	43	2.9	43	81	9	157	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58969468--58969511	19	2.3	19	92	0	70	27	9	27	36	1.87
58969629--58969661	18	1.9	18	88	11	52	54	12	0	33	1.37
58978750--58978786	18	2.0	19	89	5	58	48	2	13	35	1.57
58981219--58981259	12	3.4	12	83	12	57	0	19	31	48	1.49
58982605--58982651	18	2.6	18	83	6	51	42	4	4	48	1.42
58984148--58984190	18	2.4	18	88	3	61	37	4	0	58	1.19
58985739--58985839	33	3.0	33	75	2	103	45	13	23	16	1.84
58986672--58986718	22	2.0	24	84	15	64	55	10	10	23	1.65
58990648--58990741	20	4.7	20	70	10	84	19	23	27	29	1.98
58990648--58990771	60	2.1	60	95	0	221	19	23	29	28	1.98
58990837--58990880	11	3.9	11	90	3	70	22	31	0	45	1.53
58990837--58990880	22	2.0	23	95	4	81	22	31	0	45	1.53
58990971--58991020	25	2.0	24	88	11	75	60	2	8	30	1.37
58991505--58991552	24	2.0	24	92	4	80	8	6	14	70	1.31
58991505--58991556	23	2.3	23	84	12	65	9	5	13	71	1.30
58996265--58996294	15	2.0	15	93	0	51	23	0	0	76	0.78
58997845--58997875	16	1.9	16	93	0	53	48	9	6	35	1.62
58998004--58998046	22	2.0	21	90	4	68	30	0	4	65	1.13
58998048--58998102	18	2.9	19	84	10	60	38	0	7	54	1.28
58998017--58998102	19	4.5	20	74	12	74	37	0	5	56	1.23
58999819--58999855	14	2.7	13	88	12	56	75	0	21	2	0.92
59004061--59004239	51	3.5	50	81	9	195	24	15	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59004061--59004266	101	2.0	101	81	8	240	24	15	27	32	1.95
59004252--59004283	16	2.0	16	100	0	64	37	18	25	18	1.94
59008866--59009023	77	2.1	77	95	2	282	36	10	25	27	1.88
59012973--59013009	14	2.5	15	91	8	58	13	2	5	78	1.03
59014179--59014223	23	2.0	22	83	12	56	17	31	37	13	1.89
59014326--59014458	62	2.2	60	85	6	173	42	3	3	50	1.35
59020163--59020230	31	2.2	31	86	0	100	36	8	19	35	1.83
59021637--59021694	3	19.3	3	96	0	107	67	31	0	1	1.01
59023034--59023100	29	2.2	30	86	5	91	35	0	1	62	1.04
59025201--59025231	14	2.2	14	94	0	53	48	12	0	38	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228