genome.fa.s23.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  134  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40047825--40047898	30	2.5	30	86	8	98	21	20	18	39	1.93
40047825--40047889	20	3.2	20	71	16	53	23	21	16	38	1.93
40050109--40050146	20	1.9	20	88	0	58	15	10	39	34	1.82
40051697--40051743	20	2.3	20	81	0	58	29	34	12	23	1.92
40055006--40055062	29	2.0	29	92	0	96	24	0	29	45	1.53
40056039--40056083	14	3.3	14	78	6	56	48	15	0	35	1.45
40058661--40058725	20	3.3	19	73	16	51	38	16	21	23	1.93
40060417--40060473	20	2.8	20	78	2	60	26	12	33	28	1.92
40064661--40064717	20	2.8	20	78	2	60	26	12	33	28	1.92
40068905--40068961	20	2.8	20	81	2	69	24	12	35	28	1.91
40070379--40070441	33	1.9	33	84	12	85	12	25	6	55	1.60
40070459--40070522	27	2.4	28	82	15	73	12	18	0	68	1.20
40070482--40070555	12	5.9	12	73	9	58	12	21	1	64	1.34
40070479--40070565	24	3.5	24	71	12	68	10	24	1	64	1.32
40071587--40071630	11	4.2	11	91	5	56	13	4	4	77	1.08
40071717--40071746	11	2.6	12	94	5	53	6	3	6	83	0.90
40074731--40074795	20	3.3	19	73	16	51	38	16	21	23	1.93
40076218--40076267	18	2.8	18	87	0	73	14	28	0	58	1.37
40077316--40077356	18	2.2	19	87	12	59	9	7	4	78	1.10
40087082--40087106	13	1.9	13	100	0	50	16	32	16	36	1.90
40088291--40088316	6	4.3	6	100	0	52	15	0	0	84	0.62
40097459--40097503	14	3.3	14	78	6	56	48	15	0	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40099963--40100031	24	2.9	24	77	0	75	14	28	0	56	1.39
40099984--40100031	18	2.7	18	86	0	69	14	27	0	58	1.37
40101342--40101398	29	2.0	29	89	0	87	22	0	31	45	1.53
40102378--40102422	14	3.3	14	78	6	56	48	15	0	35	1.45
40103526--40103613	30	2.9	30	77	0	113	29	27	14	28	1.95
40104511--40104559	20	2.3	20	82	10	53	32	8	14	44	1.74
40106840--40106877	11	3.2	12	85	14	53	76	7	2	13	1.11
40107813--40107883	37	1.9	37	86	11	101	76	2	18	2	1.04
40107823--40107872	6	8.2	6	83	14	50	76	2	20	2	0.99
40107933--40107963	12	2.6	12	100	0	62	45	12	16	25	1.83
40110142--40110238	30	3.2	30	75	2	106	28	26	15	28	1.96
40111136--40111184	20	2.3	20	82	10	53	32	8	14	44	1.74
40114617--40114669	13	3.7	14	87	10	72	73	0	9	16	1.08
40115800--40115833	18	1.9	18	88	5	52	52	2	35	8	1.47
40120761--40120872	27	4.2	26	78	7	107	36	22	25	16	1.94
40120978--40121040	26	2.3	26	83	5	72	30	11	25	33	1.90
40124017--40124113	30	3.2	30	73	2	97	28	14	26	29	1.95
40126371--40126420	6	8.2	6	81	16	50	2	20	2	76	0.99
40126360--40126430	37	1.9	37	86	11	101	2	18	2	76	1.04
40126356--40126416	16	3.8	16	77	14	63	3	19	1	75	1.03
40127309--40127372	17	3.9	16	73	17	51	9	10	4	75	1.19
40127375--40127413	12	3.1	13	85	14	55	12	5	7	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40127385--40127413	13	2.1	14	93	6	51	13	3	6	75	1.13
40129130--40129226	30	3.2	30	73	2	97	28	14	26	29	1.95
40130642--40130673	16	2.0	16	93	0	55	53	6	34	6	1.51
40138176--40138251	13	5.8	12	76	15	55	11	10	3	73	1.22
40141445--40141488	22	2.0	22	95	0	79	34	4	36	25	1.76
40145815--40146055	68	3.7	64	76	12	177	31	17	26	24	1.97
40149745--40149815	35	2.0	35	100	0	142	33	19	16	29	1.94
40152503--40152536	18	1.9	18	88	5	52	8	35	2	52	1.47
40152619--40152650	15	2.1	16	94	5	57	6	21	0	71	1.07
40153558--40153632	31	2.6	28	82	12	96	9	14	5	70	1.31
40153581--40153620	17	2.4	16	88	12	55	5	15	7	72	1.24
40153611--40153685	13	5.8	12	74	18	53	16	6	4	73	1.20
40153624--40153685	13	4.5	13	73	23	56	16	4	4	74	1.17
40153598--40153685	12	6.6	13	72	22	60	13	7	5	72	1.25
40158530--40158574	13	3.6	12	85	8	63	82	0	2	15	0.77
40158530--40158574	12	3.7	12	82	11	56	82	0	2	15	0.77
40158530--40158579	26	1.9	26	92	8	84	74	0	6	20	1.03
40158626--40158688	33	1.9	33	87	6	92	73	3	12	11	1.22
40159577--40159635	21	2.8	21	87	5	75	71	0	22	6	1.09
40159588--40159635	15	3.3	14	82	5	60	77	0	18	4	0.93
40167910--40167982	29	2.6	27	76	14	76	15	20	0	64	1.29
40167924--40167957	18	1.9	18	88	5	52	23	20	0	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40171967--40172001	18	1.9	18	88	11	54	22	20	0	57	1.41
40172844--40172915	31	2.5	29	80	12	85	9	12	6	70	1.32
40179619--40179813	45	4.3	45	90	0	291	24	18	15	41	1.90
40180146--40180200	20	2.8	20	88	0	83	29	16	29	25	1.97
40185160--40185203	21	2.0	22	86	4	63	25	6	34	34	1.82
40187125--40187236	27	4.2	26	83	7	134	36	22	23	17	1.95
40187125--40187236	54	2.1	54	86	6	156	36	22	23	17	1.95
40187342--40187404	26	2.3	26	83	5	72	30	11	25	33	1.90
40194699--40194740	14	2.9	14	85	3	57	2	21	2	73	1.06
40198944--40199024	12	6.8	12	69	17	53	12	24	1	61	1.38
40198959--40199014	18	3.0	20	68	26	59	10	26	0	62	1.28
40199053--40199098	14	3.1	15	84	15	60	13	17	0	69	1.19
40200144--40200182	21	1.9	20	89	5	60	2	12	2	82	0.89
40201765--40201811	20	2.3	20	82	7	60	25	17	29	27	1.97
40203317--40203393	38	2.0	38	97	0	145	33	20	19	25	1.96
40210085--40210127	13	3.4	12	83	6	50	20	4	2	72	1.14
40210082--40210136	25	2.2	24	80	3	65	27	3	1	67	1.17
40210172--40210196	11	2.3	11	100	0	50	20	12	0	68	1.21
40211478--40211523	18	2.6	19	80	10	53	54	10	0	34	1.36
40215173--40215223	13	3.8	13	81	5	57	19	5	13	60	1.53
40216358--40216394	19	1.9	19	88	0	56	51	0	5	43	1.24
40219913--40220135	39	5.7	40	82	8	239	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40219965--40220168	79	2.6	79	82	6	202	28	20	26	24	1.99
40222483--40222660	27	6.6	27	83	3	205	26	15	28	29	1.96
40222484--40222639	82	1.9	81	88	3	233	26	15	28	29	1.96
40222480--40222660	82	2.2	81	83	2	229	27	15	27	29	1.96
40241085--40241288	27	7.5	26	85	3	192	26	15	28	28	1.96
40241085--40241288	54	3.8	53	81	6	221	26	15	28	28	1.96
40241085--40241288	109	1.9	108	85	3	284	26	15	28	28	1.96
40244024--40244062	18	2.1	19	86	13	55	51	10	17	20	1.74
40252616--40252663	23	2.1	23	100	0	96	29	12	4	54	1.56
40253713--40253747	15	2.2	16	90	5	54	11	22	0	65	1.24
40260988--40261029	16	2.5	17	84	7	59	42	11	11	33	1.78
40262360--40262431	28	2.6	29	73	10	69	20	9	12	56	1.64
40265142--40265351	104	2.0	104	100	0	420	27	5	25	40	1.78
40277296--40277343	18	2.8	18	80	20	59	18	10	12	58	1.62
40291841--40291874	16	2.1	17	88	5	52	76	11	0	11	1.02
40306231--40306294	33	1.9	33	100	0	128	34	6	18	40	1.76
40309677--40309753	24	3.2	24	66	23	70	37	10	19	32	1.86
40309673--40309772	49	2.0	49	100	0	200	35	12	20	33	1.89
40309685--40309761	24	3.2	24	66	23	70	35	11	22	31	1.90
40311737--40311769	16	2.0	17	94	5	59	72	6	6	15	1.24
40322422--40322606	40	4.6	39	82	5	194	24	22	27	25	2.00
40322422--40322606	79	2.3	81	82	7	218	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40322423--40322639	79	2.7	79	79	7	183	26	21	27	24	1.99
40325115--40325148	16	2.1	16	94	0	59	20	8	35	35	1.84
40330768--40330800	17	1.9	17	93	0	57	36	21	18	24	1.95
40332550--40332604	6	9.2	6	100	0	110	50	16	0	32	1.45
40335936--40335987	27	1.9	27	92	0	86	23	21	15	40	1.91
40338090--40338213	6	20.0	6	69	12	72	8	19	0	71	1.11
40338075--40338126	27	1.9	27	88	7	79	13	21	0	65	1.26
40338134--40338229	18	5.5	17	70	13	70	8	16	0	75	1.04
40338141--40338193	25	2.2	24	93	3	88	7	16	0	75	1.02
40338141--40338213	24	3.0	24	87	2	92	6	19	0	73	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228