genome.fa.s23.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  187  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55743831--55743855	13	1.9	13	100	0	50	12	0	48	40	1.40
55745137--55745191	20	2.7	22	73	23	57	60	0	0	40	0.97
55745575--55745641	24	2.8	25	73	17	61	31	0	0	68	0.90
55745604--55745664	27	2.3	27	81	13	72	34	0	1	63	1.04
55746607--55746632	12	2.2	12	100	0	52	7	15	30	46	1.74
55746701--55746869	73	2.3	72	81	2	185	27	23	23	26	2.00
55746873--55747639	279	2.8	279	90	7	1183	43	14	17	24	1.87
55747153--55747639	147	3.4	145	90	7	804	43	15	17	24	1.87
55747153--55747639	136	3.5	138	88	9	727	43	15	17	24	1.87
55748205--55748237	14	2.3	15	94	5	59	30	0	33	36	1.58
55748260--55748309	13	3.8	13	86	7	66	22	0	42	36	1.54
55748272--55748309	12	3.1	12	92	3	58	21	0	47	31	1.51
55748602--55748655	7	7.7	7	79	8	65	20	0	48	31	1.50
55748972--55749025	19	2.8	18	78	10	54	70	5	3	20	1.23
55749010--55749108	47	2.1	48	94	1	173	47	7	0	45	1.30
55749428--55749467	16	2.7	15	88	7	55	20	35	0	45	1.51
55753831--55754039	43	4.9	43	89	1	303	23	18	26	31	1.97
55754470--55754520	24	2.1	24	85	0	66	41	3	0	54	1.19
55758948--55758979	15	2.1	15	100	0	64	21	31	12	34	1.91
55759122--55759178	13	4.4	13	73	8	53	40	3	1	54	1.28
55759129--55759178	26	2.0	25	88	4	73	42	4	2	52	1.31
55759578--55759637	30	1.9	33	87	12	92	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55760362--55760422	24	2.5	25	79	12	65	59	0	0	40	0.98
55760348--55760402	20	2.7	22	73	23	57	60	0	0	40	0.97
55770250--55770290	12	3.4	12	93	0	64	14	2	14	68	1.32
55770257--55770294	12	3.2	12	92	0	58	10	5	10	73	1.23
55773207--55773320	22	5.2	22	68	12	90	50	9	1	37	1.45
55773207--55773358	44	3.5	44	95	0	259	50	10	1	37	1.48
55773658--55773724	18	3.8	18	86	7	93	62	0	13	23	1.30
55773645--55773731	35	2.5	35	89	9	133	60	0	14	24	1.34
55773820--55773871	23	2.2	24	89	3	79	53	0	23	23	1.46
55773820--55773895	12	6.5	11	78	13	64	53	0	21	25	1.45
55775421--55775548	58	2.2	58	88	2	186	50	13	8	27	1.70
55775479--55775667	90	2.1	90	88	2	272	52	12	5	28	1.62
55780464--55780593	42	3.2	41	90	4	201	33	20	29	17	1.95
55780784--55780814	13	2.3	14	94	5	55	41	6	0	51	1.27
55788866--55788900	13	2.6	13	90	4	52	17	2	5	74	1.14
55800743--55801457	44	16.2	44	64	16	221	30	20	25	24	1.99
55800700--55801484	132	6.0	132	91	1	1208	30	19	25	24	1.98
55800700--55801484	265	3.0	264	92	1	1251	30	19	25	24	1.98
55800700--55801484	397	2.0	390	92	2	1302	30	19	25	24	1.98
55803386--55803420	13	2.6	13	90	4	52	17	2	5	74	1.14
55806664--55807176	155	3.3	154	78	8	423	30	10	22	37	1.87
55814665--55814754	21	4.3	21	84	0	117	4	43	17	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55814745--55814891	66	2.2	66	84	7	183	12	29	17	40	1.87
55814784--55814914	66	2.0	66	86	3	183	13	26	19	40	1.89
55820343--55820386	16	2.8	16	85	0	61	36	0	15	47	1.46
55820412--55820495	9	9.8	9	70	10	68	35	1	19	44	1.58
55820414--55820544	16	7.8	16	72	13	70	37	1	18	42	1.60
55820538--55820619	38	2.3	37	85	10	116	40	2	8	48	1.47
55820587--55820994	31	13.7	31	69	19	205	40	2	12	45	1.53
55820658--55820881	9	25.6	9	70	20	86	37	2	12	46	1.57
55820658--55820881	16	12.8	18	66	23	86	37	2	12	46	1.57
55820715--55820904	22	8.8	21	71	21	101	37	2	11	47	1.54
55820691--55820858	65	2.6	65	95	2	297	38	3	10	47	1.56
55820516--55820903	152	2.6	148	83	10	427	38	2	12	46	1.55
55820834--55820906	24	3.1	24	90	7	107	39	0	12	47	1.41
55820807--55820960	56	2.8	55	87	3	202	40	1	12	46	1.50
55820813--55820993	56	3.2	56	74	16	169	41	1	12	44	1.49
55820776--55821051	142	1.9	138	81	9	297	39	2	13	44	1.56
55825863--55826264	41	9.8	40	84	6	263	34	26	24	15	1.95
55825921--55826264	82	4.2	81	89	3	485	34	27	23	14	1.94
55825863--55826264	123	3.3	122	84	4	477	34	26	24	15	1.95
55829025--55829069	16	2.7	17	79	6	56	60	0	0	40	0.97
55829780--55829829	25	2.0	25	88	0	73	60	16	6	18	1.55
55833250--55833296	22	2.1	22	100	0	94	51	4	4	40	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55834136--55834170	7	4.9	7	96	3	61	31	0	0	68	0.90
55835816--55835961	68	2.1	68	87	2	204	41	11	12	34	1.79
55842476--55842639	42	4.0	41	84	2	211	23	23	20	31	1.98
55842476--55842634	83	1.9	83	85	1	219	24	23	21	30	1.99
55842955--55843025	21	3.4	21	88	3	99	2	46	19	30	1.64
55846613--55846722	19	6.9	16	71	22	88	36	18	14	30	1.91
55846637--55846716	14	5.4	14	69	19	63	35	18	13	32	1.90
55847968--55848000	14	2.3	15	89	5	50	45	21	0	33	1.52
55848608--55848664	20	2.8	21	75	5	53	49	26	5	19	1.69
55848781--55849485	115	6.2	114	79	5	683	27	23	18	30	1.98
55848867--55849480	229	2.7	227	83	5	688	28	23	18	30	1.97
55849309--55849691	205	1.9	204	82	5	488	27	22	18	31	1.97
55851548--55851590	8	5.5	8	80	5	52	53	6	0	39	1.28
55851539--55851584	23	2.0	24	95	4	85	50	4	0	45	1.21
55853473--55853566	40	2.4	39	92	1	152	59	13	1	25	1.41
55854731--55854773	20	2.0	21	82	8	52	39	11	0	48	1.40
55854823--55854859	19	2.0	18	89	5	56	29	2	2	64	1.21
55856409--55856442	15	2.2	16	94	5	61	29	0	5	64	1.17
55856488--55856524	15	2.4	15	90	4	56	35	0	0	64	0.94
55856358--55856513	80	2.0	80	91	3	253	37	2	8	51	1.46
55859570--55860040	95	5.0	95	71	9	377	29	21	16	32	1.95
55859766--55859875	44	2.5	44	80	2	114	27	27	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55860010--55860066	23	2.5	23	100	0	114	38	10	19	31	1.86
55859898--55860192	162	1.8	163	86	5	427	29	21	17	30	1.96
55872688--55872761	22	3.3	22	75	14	87	63	6	4	25	1.37
55876016--55876099	41	2.0	41	93	0	141	35	8	19	36	1.82
55877959--55877989	6	5.2	6	100	0	62	16	0	0	83	0.64
55879413--55879473	30	2.0	30	83	0	77	19	3	4	72	1.18
55882838--55882899	9	7.6	8	84	13	74	83	9	0	6	0.79
55882838--55882896	17	3.6	17	80	17	79	83	10	0	6	0.82
55882858--55882904	14	3.3	15	91	5	71	85	12	0	2	0.70
55882840--55882902	23	2.7	23	95	2	108	82	11	0	6	0.83
55882840--55882899	32	1.9	31	93	3	102	83	10	0	6	0.81
55883350--55883399	14	3.8	13	79	10	57	84	6	10	0	0.79
55883349--55883394	20	2.2	21	88	3	67	84	6	8	0	0.77
55883347--55883410	6	10.2	6	84	14	67	82	4	12	0	0.81
55883347--55883410	26	2.5	26	87	7	87	82	4	12	0	0.81
55883347--55883410	13	5.1	12	82	14	67	82	4	12	0	0.81
55883682--55883769	45	1.9	47	83	4	117	28	13	9	48	1.73
55884497--55884768	134	2.0	134	95	0	490	27	20	23	29	1.99
55884857--55885286	130	3.3	131	79	6	463	29	20	23	27	1.99
55885249--55885366	40	2.8	41	82	8	150	34	23	19	22	1.96
55884534--55885802	481	2.7	480	90	1	1928	29	20	23	26	1.99
55885431--55885743	44	7.2	44	65	10	151	27	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55885338--55885760	130	3.3	130	93	0	713	28	19	25	26	1.99
55887397--55887457	30	2.0	30	83	0	77	19	3	4	72	1.18
55888793--55888840	15	3.1	15	80	14	53	58	2	12	27	1.46
55890511--55890557	24	2.0	24	83	8	60	34	6	0	59	1.23
55890654--55890686	15	2.1	16	88	5	50	30	6	0	63	1.18
55892200--55892234	15	2.2	16	95	5	63	65	0	11	22	1.24
55894291--55894330	18	2.1	20	86	9	57	32	5	2	60	1.32
55895737--55895885	18	8.1	19	73	11	96	46	10	11	32	1.73
55895760--55895827	17	3.9	17	70	14	59	48	10	14	26	1.76
55895744--55895831	35	2.5	36	82	10	101	47	10	12	29	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228