Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  188  of  228  ( 27298 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55895852--55895890
18
2.2
18
86
4
53
53
10
12
23
1.69
55896295--55896378
9
10.2
8
79
13
75
0
15
0
84
0.62
55896319--55896381
1
63.0
1
77
0
63
0
11
0
88
0.50
55896319--55896379
9
6.7
9
90
9
97
0
11
0
88
0.51
55896295--55896379
19
4.6
18
84
10
109
0
15
0
84
0.62
55896295--55896380
27
3.1
27
88
9
120
0
15
0
84
0.61
55896658--55896696
17
2.2
18
86
4
53
2
12
0
84
0.72
55896665--55896715
15
3.6
14
86
10
68
0
19
0
80
0.71
55896663--55896718
12
4.9
12
80
10
64
0
19
0
80
0.71
55896665--55896718
9
6.2
9
79
16
53
0
20
0
79
0.73
55896677--55896719
15
3.0
15
93
6
72
0
23
0
76
0.78
55897083--55897221
29
4.8
29
78
11
167
45
5
17
31
1.72
55897083--55897221
60
2.4
58
83
10
185
45
5
17
31
1.72
55900332--55900657
46
7.6
45
79
14
368
34
14
22
28
1.93
55900368--55900522
36
4.0
36
79
15
184
36
14
20
28
1.92
55900332--55900640
82
3.7
82
90
4
440
34
14
20
29
1.93
55900332--55900657
128
2.6
125
73
21
339
34
14
22
28
1.93
55902603--55902720
59
2.0
60
83
8
152
30
20
5
44
1.73
55902606--55902735
30
4.4
29
80
9
138
30
20
5
43
1.74
55905179--55905262
16
5.2
16
92
0
132
27
0
33
39
1.57
55905498--55905532
18
2.0
17
88
5
52
54
0
0
45
0.99
55905611--55905652
16
2.6
17
82
17
54
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55905481--55905704
120
1.9
119
95
0
396
48
6
1
43
1.36
55905706--55905787
26
3.0
27
75
12
87
52
2
1
43
1.22
55908856--55908965
33
3.3
33
80
11
136
32
7
16
43
1.75
55908912--55909014
51
2.0
51
98
0
197
29
6
17
46
1.74
55912286--55912431
31
4.7
31
85
0
186
43
16
8
31
1.79
55912286--55912451
62
2.7
62
82
4
167
43
16
7
31
1.76
55912292--55912466
93
1.9
93
79
4
201
44
14
7
33
1.73
55922973--55923007
16
2.2
16
89
0
52
31
31
5
31
1.81
55926462--55926507
24
1.9
24
82
8
58
26
6
2
65
1.28
55927001--55927079
10
8.2
9
74
14
61
63
2
1
32
1.16
55926914--55927080
28
6.0
27
68
15
81
61
2
0
35
1.16
55927064--55927088
10
2.5
10
100
0
50
56
0
0
44
0.99
55927282--55927401
37
3.2
37
74
6
127
33
0
2
63
1.14
55927284--55927409
9
13.7
9
69
11
76
33
0
3
62
1.16
55928090--55928133
21
2.0
21
86
4
61
61
2
13
22
1.43
55928641--55928694
23
2.3
23
90
6
83
7
3
14
74
1.18
55930823--55930856
17
1.9
18
88
5
52
50
8
23
17
1.74
55932251--55932283
9
3.7
9
91
0
57
24
9
21
45
1.80
55940379--55940420
14
2.9
14
82
3
57
50
0
19
30
1.48
55968337--55968519
90
2.0
89
82
3
215
42
17
7
32
1.77
55968584--55968694
10
11.7
10
69
20
60
61
1
4
32
1.27
55968584--55968643
29
2.1
29
81
6
68
65
1
3
30
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55968611--55968770
37
4.4
37
69
16
102
60
2
5
32
1.32
55968628--55968713
8
10.1
8
72
19
50
60
1
3
34
1.21
55968632--55968770
52
2.5
53
81
10
156
58
2
5
33
1.33
55968637--55968771
19
7.4
18
70
18
84
57
2
5
34
1.36
55968913--55968955
17
2.4
18
84
11
61
44
4
0
51
1.22
55968933--55968994
26
2.3
26
76
13
65
35
3
0
61
1.12
55970763--55970818
26
2.2
26
83
6
69
32
1
3
62
1.23
55973664--55973702
15
2.7
15
84
4
53
53
0
2
43
1.14
55979936--55979977
13
3.0
14
89
6
59
52
0
16
30
1.44
55980818--55980845
1
28.0
1
100
0
56
100
0
0
0
0.00
56005011--56005036
11
2.4
11
100
0
52
92
0
7
0
0.39
56010216--56010248
15
2.2
15
89
10
50
51
0
0
48
1.00
56010243--56010278
18
1.9
18
88
5
54
58
2
0
38
1.13
56015681--56015714
7
4.9
7
92
0
50
14
5
0
79
0.91
56020463--56020507
16
2.8
16
77
12
56
62
0
0
37
0.96
56021158--56021201
20
2.2
20
88
11
65
50
0
2
47
1.13
56021157--56021199
19
2.3
18
81
18
52
48
0
2
48
1.14
56021688--56021747
30
1.9
32
87
12
90
46
0
3
50
1.18
56032243--56032299
28
2.0
29
82
6
71
28
5
8
57
1.50
56035429--56035469
20
2.0
20
85
0
55
29
2
0
68
1.03
56036223--56036250
14
2.0
14
100
0
56
14
14
0
71
1.15
56036843--56036896
3
17.3
3
81
14
56
35
1
3
59
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56036969--56037041
25
2.8
25
74
17
69
30
5
0
64
1.16
56042949--56043402
44
10.3
44
73
9
345
30
16
24
28
1.96
56042923--56043286
89
4.1
89
89
4
499
29
17
23
29
1.97
56045033--56045083
3
16.3
3
80
15
59
35
1
1
60
1.19
56051605--56051638
12
2.8
12
95
4
59
64
0
2
32
1.08
56053280--56053399
44
2.7
44
89
0
177
30
22
19
27
1.98
56053277--56053973
143
4.9
143
84
1
862
27
21
19
31
1.98
56058037--56058076
19
2.1
19
86
9
55
42
12
22
22
1.87
56060098--56060142
4
12.0
4
77
13
51
75
0
2
22
0.91
56060092--56060144
18
3.2
17
80
12
58
77
0
3
18
0.92
56062157--56062231
31
2.5
30
82
6
80
37
10
12
40
1.77
56066429--56066463
16
2.2
16
89
0
52
54
0
5
40
1.24
56071169--56071238
22
3.0
22
67
18
52
31
7
2
58
1.40
56079771--56079806
3
12.0
3
93
0
63
63
0
2
33
1.08
56080419--56080454
5
7.0
5
87
6
54
77
0
2
19
0.88
56080419--56080453
16
2.2
16
94
0
61
80
0
2
17
0.84
56086728--56086775
9
5.4
9
78
14
55
29
2
2
66
1.14
56086728--56086779
17
2.9
19
75
13
56
30
3
1
63
1.23
56086915--56086952
19
2.1
17
90
9
58
31
2
0
65
1.06
56087848--56087887
20
2.0
20
100
0
80
35
10
10
45
1.71
56088081--56088220
42
3.3
42
88
4
210
25
21
20
33
1.97
56088226--56088430
42
4.8
41
76
11
173
28
20
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56088129--56088317
97
1.9
97
82
4
238
29
19
21
29
1.98
56088087--56088357
139
1.9
139
80
0
308
27
19
21
31
1.97
56088805--56088855
21
2.4
21
83
0
66
1
47
17
33
1.59
56091036--56091445
127
3.3
125
68
14
327
35
19
14
30
1.92
56090953--56091451
251
2.0
251
92
0
829
33
20
15
30
1.93
56091821--56091852
7
4.6
7
92
0
55
43
37
0
18
1.51
56092127--56092215
39
2.3
39
82
7
110
51
19
2
26
1.58
56094878--56094911
16
2.1
17
88
5
52
44
8
2
44
1.50
56096029--56096129
10
10.2
10
79
14
79
58
0
0
40
1.05
56096054--56096139
10
8.5
10
85
12
88
56
0
1
41
1.06
56096028--56096139
11
11.1
10
79
14
97
57
0
0
41
1.05
56096086--56096190
42
2.6
40
90
4
158
64
0
1
32
1.11
56099282--56099325
14
2.9
15
81
18
56
52
2
0
45
1.13
56100493--56100656
43
3.8
42
80
8
161
28
25
17
28
1.98
56100493--56100670
86
2.1
85
82
5
207
29
26
17
26
1.97
56104521--56104733
83
2.6
83
84
11
255
45
24
1
29
1.62
56104594--56104733
76
1.9
75
90
1
226
45
25
0
28
1.58
56104720--56104786
7
10.0
7
76
9
50
37
44
1
16
1.57
56104898--56104937
14
2.9
14
92
0
62
32
45
2
20
1.64
56104905--56104951
21
2.2
22
88
3
69
36
42
2
19
1.63
56104744--56105092
164
2.1
164
87
4
517
39
31
0
28
1.61
56105114--56105146
14
2.3
15
94
5
59
36
33
0
30
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56107261--56107845
151
3.9
151
85
7
742
31
11
6
50
1.63
56108071--56108228
10
16.0
10
69
16
89
0
29
0
70
0.92
56108091--56108148
23
2.7
22
77
15
59
0
37
0
62
0.96
56108123--56108235
4
25.5
4
78
19
77
0
27
0
71
0.92
56108073--56108244
34
5.0
34
82
10
174
1
30
0
68
0.97
56108082--56108244
54
3.1
53
77
12
149
1
31
0
67
0.99
56109894--56110013
41
2.9
41
93
0
204
31
24
19
25
1.98
56111592--56111616
2
12.5
2
100
0
50
52
0
0
48
1.00
56112084--56112122
21
1.9
20
85
15
53
43
2
0
53
1.14
56114288--56114321
15
2.2
16
89
5
52
64
0
2
32
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228