genome.fa.s23.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  172  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51540524--51540591	22	3.0	22	76	18	77	42	0	0	57	0.98
51542920--51542978	25	2.3	27	80	13	72	32	25	23	18	1.97
51549403--51549428	13	2.0	13	100	0	52	23	30	23	23	1.99
51550208--51550250	21	2.0	21	90	0	68	25	20	30	23	1.99
51556347--51556423	24	3.2	24	83	9	95	15	23	24	36	1.94
51559463--51559521	22	2.6	22	86	7	75	35	6	1	55	1.36
51563524--51563553	3	10.0	3	100	0	60	33	0	0	66	0.92
51566114--51566153	21	1.9	21	89	0	62	47	5	10	37	1.59
51570030--51570068	20	2.0	20	84	0	51	64	10	7	17	1.48
51577092--51577163	36	2.0	36	97	0	135	20	27	16	34	1.95
51578852--51578906	9	6.1	9	86	0	83	45	9	10	34	1.71
51578852--51578906	18	3.1	18	94	0	92	45	9	10	34	1.71
51579120--51579179	30	2.0	31	86	3	86	20	40	0	40	1.52
51581155--51581557	164	2.5	164	95	0	716	35	21	18	25	1.95
51588112--51588174	27	2.4	26	80	12	67	61	3	3	31	1.27
51593237--51593274	6	6.2	6	87	6	58	13	15	15	55	1.70
51593237--51593274	19	2.1	18	95	5	67	13	15	15	55	1.70
51594849--51595095	50	4.8	50	81	5	237	23	28	20	27	1.99
51602598--51602724	49	2.6	49	82	3	148	31	22	23	22	1.98
51605356--51605447	31	3.0	31	84	6	123	22	32	33	10	1.89
51605362--51605460	31	3.2	31	86	0	90	22	33	34	10	1.87
51607026--51607098	38	2.0	37	84	10	96	31	9	23	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51608736--51608803	10	6.3	10	74	24	50	48	2	1	47	1.26
51609124--51609243	60	2.0	60	100	0	240	21	11	18	48	1.80
51610953--51611091	41	3.4	41	79	5	129	17	12	31	38	1.88
51611128--51611182	16	3.8	15	77	11	53	41	3	3	50	1.37
51611470--51611507	14	2.7	15	88	12	62	26	0	31	42	1.56
51611855--51611920	22	3.1	22	70	10	57	21	0	40	37	1.53
51612098--51612151	19	2.8	18	78	10	54	70	3	5	20	1.23
51612136--51612237	50	2.1	50	85	14	142	46	7	0	45	1.39
51612892--51612993	50	2.1	50	84	14	133	46	8	0	44	1.41
51612892--51612993	47	2.1	48	84	14	129	46	8	0	44	1.41
51614092--51614118	14	1.9	14	100	0	54	29	14	7	48	1.71
51614335--51614378	22	2.0	22	95	0	79	31	13	15	38	1.87
51614759--51614939	54	3.4	53	79	13	151	48	12	2	37	1.54
51614871--51614895	12	2.1	12	100	0	50	52	16	0	32	1.44
51614883--51615115	9	26.9	9	64	21	79	45	20	2	30	1.64
51614851--51614899	20	2.4	21	86	10	66	46	16	2	34	1.58
51614868--51614993	54	2.3	54	83	5	148	46	17	3	32	1.64
51614936--51615070	63	2.2	63	86	4	166	47	22	2	27	1.65
51614947--51615093	25	6.0	25	65	19	60	44	22	2	29	1.66
51614982--51615086	16	6.7	15	72	14	70	45	22	2	28	1.67
51615030--51615111	41	2.0	41	87	0	119	46	21	0	31	1.52
51615061--51615138	25	3.3	25	80	8	92	44	19	0	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51616871--51616924	21	2.6	21	90	0	90	44	18	31	5	1.73
51617268--51617401	43	3.1	43	87	5	166	27	20	27	24	1.99
51618630--51618671	18	2.5	17	85	14	52	66	2	0	30	1.04
51618613--51618690	25	3.0	25	81	14	70	61	1	1	35	1.12
51619606--51619689	30	2.8	30	82	10	84	40	0	2	57	1.12
51619638--51619677	21	1.9	21	94	0	71	40	0	2	57	1.12
51621709--51621744	12	3.0	12	100	0	72	50	0	33	16	1.46
51621684--51621736	27	2.0	27	85	14	74	49	0	33	16	1.47
51622995--51623057	31	2.0	32	87	3	92	19	15	7	57	1.63
51623761--51623814	11	4.9	11	76	19	51	35	1	3	59	1.26
51623761--51623814	22	2.4	23	82	11	60	35	1	3	59	1.26
51643094--51643136	21	2.1	20	83	12	52	13	4	9	72	1.26
51653118--51653241	43	2.9	43	93	0	212	29	19	25	25	1.99
51655241--51655273	13	2.5	13	100	0	66	33	0	0	66	0.92
51660122--51660249	45	2.8	45	77	4	116	41	10	21	25	1.86
51660367--51660447	27	3.0	27	76	3	83	40	16	23	19	1.90
51670207--51670262	5	11.2	5	100	0	112	58	0	0	41	0.98
51679713--51679768	18	3.1	18	75	10	60	46	19	3	30	1.67
51680060--51680134	32	2.4	31	80	14	91	41	16	6	36	1.74
51684497--51684541	24	1.9	24	90	4	74	31	17	6	44	1.75
51694118--51694161	22	2.0	22	100	0	88	36	18	13	31	1.90
51697323--51697361	19	2.1	19	95	0	69	35	35	20	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51712513--51712548	17	2.1	17	89	0	54	41	22	8	27	1.82
51713603--51713677	32	2.4	31	88	6	107	42	14	5	37	1.69
51720369--51720708	99	3.4	100	83	4	395	21	27	20	29	1.98
51720377--51720709	50	6.7	50	80	9	346	21	27	20	30	1.98
51722057--51722101	24	1.9	23	86	4	63	31	20	2	46	1.62
51742811--51742930	39	3.1	39	79	11	129	34	5	32	27	1.81
51742846--51742912	18	3.6	18	69	11	62	29	7	34	28	1.85
51742909--51742945	18	2.1	18	90	10	58	45	5	29	18	1.72
51746631--51746703	30	2.4	30	97	0	137	20	31	27	20	1.97
51752130--51752169	5	8.0	5	100	0	80	60	0	0	40	0.97
51760303--51760404	17	5.9	17	74	2	78	43	20	7	28	1.80
51761397--51761486	33	2.6	34	86	6	112	46	13	4	35	1.63
51769220--51769398	85	2.1	85	97	0	340	37	8	27	25	1.86
51770663--51770926	47	5.6	47	91	3	415	34	8	29	27	1.87
51777855--51777940	30	3.0	29	85	12	117	43	6	24	25	1.79
51777853--51777941	25	3.1	30	85	12	125	41	6	25	25	1.80
51782512--51782593	25	3.0	27	86	13	123	43	7	23	25	1.79
51797763--51797806	23	1.9	23	95	0	79	20	31	4	43	1.72
51802675--51802711	14	2.7	15	84	16	53	51	0	13	35	1.41
51804848--51804949	17	5.9	17	73	2	60	44	18	6	30	1.76
51805595--51805644	18	2.8	18	76	11	57	48	14	4	34	1.62
51812714--51813054	50	6.8	50	77	1	299	22	27	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51812776--51812995	100	2.2	100	98	0	422	22	28	21	27	1.99
51812776--51813054	100	2.8	100	91	0	360	22	28	21	27	1.99
51814341--51814385	24	1.9	24	95	4	83	31	20	4	44	1.71
51832865--51832910	20	2.3	20	92	0	74	52	15	4	28	1.61
51834175--51834423	50	4.8	50	85	3	291	21	30	22	26	1.99
51834174--51834423	100	2.4	103	87	5	344	21	30	22	26	1.99
51842443--51842479	18	2.1	18	94	0	65	27	2	0	70	1.01
51842754--51842786	4	8.2	4	100	0	66	24	0	0	75	0.80
51843287--51843477	103	1.9	103	83	2	249	31	14	25	28	1.95
51847714--51847783	23	3.2	22	82	11	74	70	0	7	22	1.12
51848301--51848337	19	1.9	19	88	0	56	37	16	5	40	1.71
51848551--51848640	35	2.6	33	81	14	103	50	13	2	34	1.54
51855119--51855172	19	2.8	19	94	0	90	37	16	7	38	1.77
51855129--51855182	19	2.9	18	89	5	56	35	18	11	35	1.86
51855520--51855563	24	1.9	23	90	9	72	34	0	2	63	1.07
51855660--51855687	9	3.1	9	100	0	56	57	10	0	32	1.33
51855630--51855897	67	4.1	68	88	10	425	45	8	5	40	1.58
51855786--51855813	9	3.1	9	100	0	56	57	10	0	32	1.33
51855630--51855875	126	1.9	127	96	0	458	45	9	5	39	1.59
51855886--51855927	16	2.6	16	92	0	66	42	7	2	47	1.43
51855901--51855956	23	2.5	23	82	2	69	41	3	3	51	1.36
51855630--51855919	59	4.5	65	84	13	347	45	8	4	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51856198--51856297	41	2.4	40	85	9	130	49	12	3	36	1.55
51856244--51856309	29	2.3	28	76	7	71	48	13	1	36	1.52
51857118--51857160	21	2.0	21	100	0	86	46	20	13	18	1.83
51861152--51861251	51	2.0	51	82	4	121	46	3	26	25	1.67
51861448--51861525	40	2.0	40	86	0	111	20	26	29	23	1.99
51862935--51862979	24	1.9	24	95	4	83	31	20	4	44	1.71
51863597--51863634	4	9.5	4	83	11	51	26	0	0	73	0.83
51863595--51863634	20	2.0	20	95	0	71	27	0	0	72	0.85
51864528--51864586	26	2.3	26	93	0	100	61	0	11	27	1.31
51864622--51864646	12	2.1	12	100	0	50	48	0	12	40	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228