genome.fa.s23.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  168  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50530169--50530255	45	1.9	45	97	0	165	21	18	10	49	1.77
50539066--50539251	101	1.8	101	87	5	277	25	16	26	31	1.96
50539062--50539258	51	3.9	50	77	5	193	25	15	27	30	1.96
50541370--50541418	26	2.0	24	84	8	62	36	0	2	61	1.08
50547225--50547378	28	5.5	28	96	0	265	33	28	11	26	1.91
50557844--50557883	9	4.4	9	87	0	62	47	15	10	27	1.77
50560674--50560734	26	2.3	26	80	5	70	31	4	3	60	1.34
50560673--50560735	27	2.4	25	77	12	65	33	4	3	58	1.35
50565420--50565464	20	2.2	20	88	0	63	20	4	6	68	1.29
50571235--50571271	20	1.9	19	89	10	58	45	10	0	43	1.39
50574833--50575010	64	2.8	65	77	2	171	35	16	17	29	1.92
50580070--50580143	31	2.3	32	77	9	80	29	2	2	64	1.21
50591463--50591607	41	3.6	38	78	16	125	31	21	17	30	1.96
50591859--50591968	41	2.7	41	81	9	125	26	24	20	28	1.99
50591892--50591969	41	1.9	41	92	5	131	24	26	17	30	1.97
50591859--50592009	81	1.8	83	81	8	193	27	24	20	27	1.99
50604767--50604820	23	2.4	23	87	6	76	59	7	1	31	1.36
50604770--50604839	3	23.3	3	74	11	63	61	5	1	31	1.28
50605302--50605339	11	3.2	12	88	11	60	47	0	52	0	1.00
50605814--50605838	8	3.1	8	100	0	50	24	12	52	12	1.72
50607815--50607885	19	3.6	19	88	7	106	35	9	15	39	1.81
50608020--50608111	47	2.0	47	88	0	139	52	5	16	26	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50613591--50613616	11	2.4	11	100	0	52	92	0	7	0	0.39
50614827--50615517	88	7.9	88	91	0	1006	25	24	26	23	2.00
50615518--50615773	44	5.8	44	83	2	264	31	15	22	30	1.95
50615521--50615801	133	2.1	133	89	0	427	31	15	23	29	1.95
50615565--50615729	89	1.9	89	85	2	233	32	15	21	30	1.94
50615521--50615839	133	2.4	133	84	3	356	31	15	23	29	1.96
50616146--50616220	19	3.6	21	81	15	84	34	9	17	38	1.82
50624093--50624158	25	2.6	25	83	4	71	19	27	18	34	1.95
50624120--50624170	25	2.0	25	85	7	68	21	29	15	33	1.94
50630679--50630746	34	2.0	34	85	5	93	20	26	23	29	1.99
50634287--50634394	25	4.3	25	77	9	103	19	25	22	33	1.97
50644219--50644303	9	9.4	9	85	0	107	48	20	5	25	1.72
50644218--50644303	18	4.8	18	89	0	127	48	19	5	25	1.71
50644219--50644303	27	3.1	27	88	3	127	48	20	5	25	1.72
50644302--50644376	37	2.0	37	92	0	123	44	14	5	36	1.68
50644503--50644619	39	3.0	39	92	1	191	18	2	28	50	1.60
50644600--50644654	13	3.9	13	73	17	56	16	0	45	38	1.47
50646817--50647154	125	2.7	125	90	0	532	32	14	20	33	1.92
50648736--50648874	56	2.5	55	77	13	149	45	7	10	36	1.67
50648844--50648900	26	2.2	26	96	0	105	57	7	7	28	1.51
50648898--50649709	28	28.4	28	89	4	1165	25	0	24	50	1.51
50648898--50649716	85	9.6	85	90	4	1132	25	0	24	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50648898--50649716	57	14.3	57	91	2	1247	25	0	24	50	1.51
50649932--50649987	24	2.3	24	96	0	103	1	23	32	42	1.64
50650242--50650287	18	2.6	18	82	0	56	39	8	30	21	1.84
50652014--50652076	31	2.1	30	91	5	101	63	0	0	36	0.95
50652085--50652132	22	2.2	22	100	0	96	41	0	33	25	1.55
50653967--50653998	3	10.7	3	93	0	55	65	0	3	31	1.08
50654182--50654226	17	2.7	16	83	10	63	24	8	2	64	1.34
50655459--50655502	20	2.2	20	88	8	63	27	2	4	65	1.23
50655499--50655538	19	2.0	20	90	4	64	27	0	5	67	1.11
50658449--50658497	17	2.6	19	75	18	57	38	20	14	26	1.91
50664108--50664251	42	3.4	42	89	2	209	27	15	27	29	1.96
50664115--50664289	84	2.1	84	78	13	182	30	14	25	29	1.95
50665324--50665375	25	2.1	25	82	13	63	23	1	26	48	1.62
50669685--50669745	30	2.0	30	96	0	113	45	26	4	22	1.72
50669682--50669752	30	2.5	28	86	8	106	43	26	4	25	1.73
50672318--50672355	20	1.9	19	89	5	58	44	2	0	52	1.14
50672348--50672576	10	24.6	9	63	19	53	61	3	2	32	1.27
50674971--50675018	11	4.3	11	76	5	51	64	4	0	31	1.12
50675220--50675594	187	2.0	187	98	0	732	30	19	6	43	1.76
50676162--50676187	11	2.4	11	100	0	52	23	0	0	76	0.78
50676305--50676379	27	2.8	28	78	15	77	30	2	2	64	1.21
50676314--50676355	18	2.4	18	84	4	59	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50676360--50676418	18	3.2	17	80	17	64	22	5	0	72	1.03
50680931--50680966	18	2.0	18	100	0	72	27	27	5	38	1.79
50682664--50682718	27	2.0	27	86	6	76	45	0	29	25	1.54
50682651--50682707	20	3.0	18	82	10	69	45	0	31	22	1.53
50683154--50683193	18	2.2	18	100	0	80	12	5	42	40	1.64
50685182--50685511	87	3.8	87	87	4	497	23	23	23	28	1.99
50685159--50685511	172	2.0	173	89	3	543	22	23	23	29	1.99
50700496--50700527	15	2.1	15	94	0	55	75	3	3	18	1.08
50700765--50700799	3	12.0	3	93	6	63	65	0	0	34	0.93
50702487--50702737	42	5.9	42	75	7	177	27	23	20	29	1.99
50702483--50702777	45	6.8	44	73	10	164	27	22	20	29	1.98
50702488--50702781	86	3.4	85	74	9	265	26	22	20	29	1.99
50715097--50715128	15	2.1	15	94	0	55	75	3	3	18	1.08
50715369--50715425	3	19.0	3	100	0	114	66	0	0	33	0.92
50716327--50716359	17	1.9	17	93	0	57	75	15	3	6	1.11
50716724--50716756	15	2.2	15	89	10	50	6	6	45	42	1.53
50718352--50718395	18	2.5	18	74	3	54	54	9	2	34	1.44
50719626--50719693	30	2.3	30	97	2	129	20	11	8	58	1.59
50720361--50720418	28	2.1	28	100	0	116	25	10	24	39	1.87
50722033--50722062	12	2.6	11	90	10	51	66	0	3	30	1.07
50723684--50723799	58	2.0	58	100	0	232	34	13	17	34	1.89
50723814--50724144	44	7.7	43	72	13	277	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50723773--50724226	44	10.5	44	71	12	232	26	20	21	30	1.98
50723814--50724226	85	4.8	84	72	13	295	26	20	22	30	1.98
50723804--50724226	129	3.3	129	91	0	702	26	20	22	30	1.98
50724299--50724955	50	13.2	50	66	8	282	26	20	21	31	1.98
50724234--50724967	199	3.7	199	89	1	1024	26	21	21	31	1.98
50725262--50725319	24	2.4	24	91	0	89	32	20	12	34	1.90
50726202--50726250	18	2.8	17	84	9	62	0	12	4	83	0.77
50729323--50729374	19	2.7	20	82	5	63	46	11	17	25	1.81
50731459--50731496	19	1.9	19	89	5	58	68	0	5	26	1.11
50731475--50731507	12	2.8	12	86	4	50	66	0	3	30	1.06
50734315--50734349	17	2.1	17	100	0	70	34	22	11	31	1.90
50746514--50746569	15	3.7	15	78	0	58	21	7	30	41	1.80
50750595--50750649	25	2.2	25	90	0	83	16	3	16	63	1.44
50752379--50752422	3	14.7	3	90	0	70	2	29	0	68	1.02
50760431--50760457	13	2.1	13	100	0	54	37	7	33	22	1.82
50762893--50763490	94	6.4	94	71	11	340	32	17	21	29	1.96
50762928--50763081	50	3.2	48	73	18	140	29	16	24	29	1.97
50762993--50763370	138	2.7	138	83	0	461	32	17	21	28	1.96
50763314--50763603	138	2.1	138	79	2	305	33	19	19	28	1.96
50763529--50763677	50	3.1	48	67	14	110	34	17	19	28	1.94
50763452--50763744	94	3.1	94	82	3	313	32	18	19	29	1.96
50763130--50763722	232	2.6	232	83	3	710	33	17	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50763486--50763772	94	3.1	92	81	6	317	33	17	20	27	1.96
50763511--50763865	94	3.8	94	78	7	267	35	16	20	27	1.94
50764928--50765011	37	2.3	37	93	0	150	22	22	22	32	1.98
50766668--50766693	13	2.0	13	100	0	52	46	0	0	53	1.00
50768324--50768350	14	1.9	14	100	0	54	44	0	0	55	0.99
50783802--50783998	27	7.4	27	80	5	222	37	13	15	33	1.87
50783796--50784028	53	4.4	53	85	4	301	36	15	15	32	1.89
50783802--50784025	27	8.4	27	78	10	156	36	14	16	32	1.89
50783802--50784025	80	2.8	77	76	13	211	36	14	16	32	1.89
50789115--50789154	21	1.9	21	89	0	62	77	2	0	20	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228