genome.fa.s23.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  208  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60825150--60825192	18	2.4	18	84	7	52	11	4	41	41	1.62
60828696--60828756	25	2.4	25	88	0	86	26	13	27	32	1.93
60828814--60829019	13	15.5	13	70	12	123	45	3	17	33	1.67
60828814--60829008	27	7.3	26	75	12	110	45	3	17	33	1.66
60828814--60828947	40	3.3	40	91	0	223	44	2	17	35	1.62
60828851--60829005	67	2.3	65	80	6	175	44	3	18	33	1.68
60828814--60828978	80	2.1	80	86	4	226	44	3	18	33	1.65
60829051--60829092	13	3.2	13	83	6	50	47	0	14	38	1.44
60834339--60834396	21	2.8	21	83	0	71	34	24	20	20	1.97
60834502--60834536	18	2.0	17	88	5	52	20	17	25	37	1.94
60835044--60835073	15	1.9	16	93	6	53	80	3	0	16	0.85
60835535--60835730	97	2.0	97	97	0	374	27	32	10	30	1.90
60837442--60837524	21	4.0	21	82	0	85	26	31	28	13	1.94
60838519--60838562	19	2.3	19	84	7	54	29	2	20	47	1.62
60843404--60843472	16	4.2	16	96	3	129	24	0	37	37	1.56
60843404--60843472	33	2.1	32	97	2	129	24	0	37	37	1.56
60843463--60843550	44	2.0	45	86	2	124	31	6	27	34	1.83
60843458--60843566	44	2.6	40	74	17	112	32	6	27	33	1.82
60843595--60843910	157	2.0	156	93	1	544	43	3	5	47	1.42
60843844--60843885	15	2.7	16	82	14	52	52	2	0	45	1.13
60843853--60843894	15	2.9	15	82	10	52	52	0	0	47	1.00
60843847--60844139	120	2.4	121	94	2	502	50	4	3	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60843973--60844014	15	2.9	15	82	10	52	52	0	0	47	1.00
60847936--60848003	16	4.2	16	94	0	109	27	0	35	36	1.58
60847984--60848078	45	2.1	44	86	1	127	34	5	26	33	1.79
60848240--60848274	18	2.0	17	88	5	52	54	0	0	45	0.99
60848198--60848270	27	2.7	27	76	8	76	52	2	0	45	1.15
60848387--60848421	18	2.0	17	88	5	52	54	0	0	45	0.99
60848159--60848433	147	1.9	149	95	1	500	46	3	2	47	1.35
60848489--60848541	16	3.4	17	73	21	53	56	0	0	43	0.99
60848415--60848601	60	3.1	59	66	13	157	49	6	2	41	1.42
60848367--60848661	119	2.5	120	93	2	495	50	4	2	43	1.35
60853897--60853940	11	4.1	10	83	13	52	56	2	2	38	1.24
60853895--60853940	22	2.1	22	88	8	67	56	2	2	39	1.24
60856125--60856170	20	2.2	21	85	14	60	65	6	2	26	1.28
60859182--60859246	31	2.1	31	85	0	85	35	13	12	38	1.83
60861350--60861376	6	4.5	6	100	0	54	66	0	18	14	1.25
60872299--60872352	27	2.0	27	92	0	90	35	12	20	31	1.90
60876043--60876161	42	2.8	42	79	5	132	17	26	15	40	1.90
60876032--60876182	42	3.6	42	79	5	117	16	25	15	43	1.87
60878356--60878483	52	2.5	52	88	3	179	29	27	14	28	1.95
60886614--60886711	49	2.0	49	97	0	187	45	20	15	18	1.85
60893354--60893405	25	2.1	25	89	3	79	38	23	23	15	1.92
60894845--60894890	22	2.0	23	84	12	60	56	6	0	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60901817--60901878	31	2.0	31	96	0	115	32	9	14	43	1.78
60902176--60902210	3	11.7	3	100	0	70	31	0	0	68	0.90
60902209--60902240	3	10.7	3	100	0	64	0	0	31	68	0.90
60906039--60906100	28	2.2	28	85	2	81	32	22	20	24	1.98
60906467--60906660	27	7.2	26	90	3	208	20	16	23	39	1.92
60906467--60906635	81	2.1	82	87	3	243	21	17	22	39	1.93
60906467--60906660	54	3.6	54	86	0	244	20	16	23	39	1.92
60919181--60919279	11	9.7	11	68	22	56	38	3	0	58	1.14
60919168--60919297	40	3.3	40	87	3	194	34	3	0	61	1.14
60919244--60919277	17	2.0	17	88	0	50	35	0	0	64	0.94
60919232--60919287	29	1.9	29	82	7	69	35	5	0	58	1.21
60919430--60919472	16	2.7	16	88	0	59	20	55	23	0	1.43
60921640--60921711	31	2.2	33	82	9	85	34	15	33	16	1.90
60921806--60921877	30	2.4	30	84	15	96	34	2	0	62	1.10
60921814--60921936	40	3.0	40	87	4	174	33	2	0	63	1.13
60921825--60921887	10	6.3	10	78	14	58	31	1	0	66	1.01
60921867--60921900	17	2.0	17	94	0	59	26	0	0	73	0.83
60922775--60922805	3	10.3	3	100	0	62	64	0	0	35	0.94
60923016--60923070	26	2.2	25	83	3	65	29	1	5	63	1.27
60923344--60923448	33	3.2	33	91	0	174	32	12	8	46	1.72
60923731--60923900	93	1.8	94	82	6	220	52	20	10	17	1.73
60926621--60926650	5	6.0	5	100	0	60	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60926617--60926658	15	2.8	16	89	10	70	16	4	0	78	0.91
60936352--60936440	42	2.2	40	83	4	106	40	13	11	34	1.80
60939196--60939236	3	13.7	3	84	0	55	63	2	0	34	1.08
60940977--60941016	20	2.0	21	90	5	64	35	0	2	62	1.09
60941031--60941110	8	10.1	8	72	20	55	36	3	0	60	1.15
60941034--60941125	23	4.0	23	73	24	79	34	4	1	59	1.24
60941460--60941501	19	2.2	19	86	4	57	38	7	2	52	1.42
60942987--60943058	3	24.0	3	85	0	63	56	1	8	33	1.38
60947840--60947889	20	2.5	20	90	0	82	20	14	28	38	1.91
60948856--60948885	10	3.0	10	90	0	51	26	0	13	60	1.34
60950912--60951133	23	9.2	24	76	13	199	32	4	4	58	1.40
60950931--60951039	24	4.5	24	74	20	93	29	2	4	63	1.28
60951208--60951271	32	2.0	31	82	8	76	31	6	4	57	1.44
60951246--60951291	25	1.9	24	91	8	76	30	6	8	54	1.56
60951254--60951308	25	2.2	26	78	15	62	30	10	9	49	1.69
60980228--60980291	33	1.9	33	84	6	85	12	10	7	68	1.38
60980291--60980322	15	2.2	14	94	5	55	21	15	6	56	1.62
60980968--60981028	27	2.2	27	83	13	72	50	6	0	42	1.28
60982671--60982795	60	2.1	61	84	1	162	39	4	16	40	1.69
60988987--60989076	46	2.0	46	82	4	110	35	13	18	32	1.90
61001221--61001267	21	2.4	19	80	16	51	68	0	4	27	1.08
61002782--61002845	32	2.0	33	87	3	94	35	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61007125--61007180	29	1.9	29	100	0	112	19	7	21	51	1.70
61009845--61009878	15	2.3	15	89	0	50	58	8	14	17	1.61
61010975--61011005	6	5.3	6	96	3	55	70	0	12	16	1.16
61011739--61011850	42	2.7	42	86	6	149	22	21	25	31	1.98
61011962--61012155	46	4.3	46	67	12	141	30	23	19	25	1.98
61011900--61012223	134	2.4	135	93	3	555	28	22	20	27	1.99
61012125--61012415	95	3.0	95	94	2	519	28	22	19	29	1.98
61012406--61012582	86	2.0	87	91	1	284	26	23	23	27	2.00
61012437--61012578	44	3.3	43	68	18	114	28	22	24	24	2.00
61018644--61018677	15	2.3	15	89	0	50	58	8	14	17	1.61
61021710--61021748	18	2.1	19	95	4	71	69	0	5	25	1.09
61022996--61023035	21	1.9	21	84	0	53	20	37	22	20	1.94
61026307--61026351	24	1.9	23	90	4	72	40	4	4	51	1.42
61027661--61028553	444	2.0	444	100	0	1786	34	15	12	37	1.86
61031132--61031177	21	2.2	20	88	3	65	36	0	2	60	1.09
61032471--61032520	15	3.5	15	78	15	61	48	0	2	50	1.12
61033007--61033060	27	2.0	27	92	0	90	27	16	20	35	1.94
61033673--61033707	18	1.9	18	88	0	52	48	5	5	40	1.51
61034252--61034355	54	1.9	54	84	7	138	48	3	4	43	1.42
61040199--61040267	36	1.9	36	88	5	104	46	0	14	39	1.45
61040350--61040388	20	2.0	20	94	0	69	46	0	10	43	1.37
61049815--61049892	37	2.1	37	87	0	111	34	24	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61049813--61049913	37	2.9	35	76	18	97	33	25	9	30	1.89
61050110--61050279	41	4.1	41	93	0	277	24	28	18	28	1.98
61050110--61050272	82	2.0	82	98	0	317	23	28	19	28	1.98
61059355--61059554	106	1.9	106	85	2	276	33	17	14	36	1.89
61070186--61070630	44	9.8	45	68	17	174	32	21	20	26	1.97
61070127--61070566	138	3.2	137	85	2	587	31	21	20	27	1.98
61070323--61070664	182	1.9	182	82	4	440	32	21	19	26	1.97
61072475--61072687	106	2.0	106	89	0	327	30	18	13	37	1.89
61076544--61076593	20	2.5	20	77	6	57	52	2	4	42	1.31
61083851--61083889	20	2.0	20	85	10	53	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228