Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  126  of  228  ( 27298 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37332205--37332433
55
4.1
55
93
1
359
31
29
13
25
1.94
37332205--37332417
111
1.9
110
93
0
363
31
28
14
25
1.94
37339496--37339524
3
9.7
3
100
0
58
68
0
31
0
0.89
37342750--37342783
16
2.2
15
89
5
50
44
0
0
55
0.99
37343565--37343602
8
4.6
8
87
6
58
34
2
0
63
1.09
37347534--37347743
40
5.3
40
90
0
296
26
28
20
25
1.99
37347537--37347796
80
3.3
80
85
2
247
25
28
21
25
1.99
37347532--37347796
120
2.2
118
79
4
289
26
27
20
25
1.99
37351917--37352007
40
2.2
41
80
1
103
20
29
17
31
1.96
37359118--37359204
40
2.2
40
82
10
108
20
32
12
34
1.90
37370288--37370338
21
2.4
21
100
0
102
39
37
15
7
1.77
37371355--37372219
447
1.9
450
95
3
1555
35
9
4
49
1.57
37372476--37372513
13
2.8
14
80
19
53
21
5
7
65
1.38
37378853--37378899
6
7.5
6
79
15
51
76
0
23
0
0.78
37378853--37378901
11
4.2
11
82
17
55
75
0
24
0
0.80
37378862--37378901
14
2.7
15
88
7
64
77
0
22
0
0.77
37378866--37378901
17
2.0
19
89
10
58
77
0
22
0
0.76
37380144--37380323
92
2.0
89
82
6
220
27
18
25
28
1.98
37380351--37380868
260
2.0
260
90
1
824
27
19
25
26
1.99
37380894--37381218
44
7.5
44
74
10
283
28
21
22
27
1.99
37380943--37381141
84
2.3
87
81
12
216
27
21
25
26
1.99
37382698--37382779
21
3.9
21
69
21
55
31
1
6
60
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37383418--37383455
13
2.8
14
80
19
53
21
5
7
65
1.38
37383462--37383495
15
2.3
15
94
0
59
17
0
17
64
1.29
37384539--37384786
50
4.8
50
83
3
262
27
20
28
22
1.99
37389053--37389086
10
3.3
10
84
8
50
41
0
11
47
1.40
37387919--37391286
593
5.7
592
81
5
3764
33
15
12
38
1.85
37398095--37398132
16
2.4
17
86
8
53
36
0
2
60
1.11
37398709--37398776
34
2.0
34
97
0
127
33
13
11
41
1.81
37401118--37401200
37
2.2
37
86
0
112
36
32
16
14
1.89
37405401--37405497
40
2.4
40
93
3
160
28
20
20
29
1.98
37412429--37412520
43
2.1
43
93
0
157
28
11
25
34
1.91
37413417--37413597
40
4.5
40
88
4
267
27
22
22
28
1.99
37414627--37414790
43
3.8
43
83
4
197
20
20
28
30
1.98
37419737--37420068
47
7.1
47
93
0
540
32
9
30
28
1.88
37420187--37420265
37
2.1
37
86
4
106
25
17
30
26
1.97
37425147--37425534
44
8.9
44
74
7
299
27
21
20
30
1.98
37425119--37425363
89
2.8
89
83
4
291
26
21
20
30
1.98
37438337--37438362
12
2.2
12
100
0
52
76
0
15
7
0.99
37438522--37438548
13
2.1
13
100
0
54
22
33
0
44
1.53
37445547--37445599
25
2.1
26
82
3
63
67
1
5
24
1.22
37455797--37455854
22
2.6
22
81
5
73
31
22
13
32
1.93
37457337--37457390
25
2.1
26
83
10
67
42
3
22
31
1.71
37458609--37458706
25
3.9
25
82
0
115
31
23
19
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37458606--37458707
50
2.0
50
86
0
141
31
24
18
25
1.98
37461137--37461189
21
2.5
21
84
6
72
32
3
26
37
1.74
37461337--37461366
15
2.0
15
93
0
51
56
20
0
23
1.42
37461965--37462057
35
2.7
35
89
3
143
38
18
16
26
1.91
37468681--37468783
20
5.2
20
64
9
57
17
29
19
33
1.95
37468740--37468803
20
3.2
20
70
16
69
18
32
12
35
1.89
37468643--37468832
40
4.8
40
87
0
236
18
27
18
34
1.95
37469602--37469708
54
2.0
54
83
0
133
22
26
32
18
1.97
37476274--37476309
11
3.0
12
88
12
56
72
0
8
19
1.10
37476276--37476305
11
2.7
11
100
0
60
76
0
6
16
0.99
37476330--37476358
5
5.8
5
100
0
58
82
0
0
17
0.66
37477976--37478160
50
3.7
50
88
0
244
20
30
22
25
1.98
37478261--37478287
13
2.1
13
100
0
54
62
7
0
29
1.22
37481313--37481482
40
4.3
40
86
0
207
24
20
28
26
1.99
37481260--37481482
80
2.8
79
81
3
232
24
21
28
26
1.99
37481335--37481517
79
2.3
80
82
1
226
25
20
28
25
1.99
37481676--37481732
28
2.0
28
100
0
114
21
7
28
43
1.78
37483611--37483734
46
2.8
46
90
3
191
28
22
16
33
1.95
37483611--37483845
37
5.8
45
85
10
198
27
21
15
36
1.93
37483696--37483872
37
4.8
37
95
0
300
26
20
13
38
1.90
37497527--37497696
40
4.3
40
88
0
207
24
21
28
25
1.99
37497474--37497696
80
2.8
79
82
3
232
24
21
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37497549--37497731
79
2.3
80
82
1
226
25
21
28
24
1.99
37504279--37504461
50
3.7
50
93
0
294
20
31
21
26
1.98
37507602--37508203
47
12.6
47
90
3
918
29
29
8
32
1.86
37507602--37508203
145
4.2
143
93
2
949
29
29
8
32
1.86
37510180--37510222
22
2.0
22
86
9
61
23
13
0
62
1.31
37511496--37511538
11
4.0
11
81
6
52
65
2
4
27
1.25
37515190--37515522
47
7.1
47
93
0
513
32
9
30
28
1.88
37518593--37518699
50
2.1
50
81
3
126
22
28
21
28
1.99
37525980--37526018
20
2.0
20
90
10
62
15
23
5
56
1.59
37526224--37526349
49
2.6
49
75
6
121
26
25
19
29
1.98
37531732--37531762
12
2.6
12
100
0
62
61
6
0
32
1.21
37535474--37535504
16
1.9
16
93
0
53
25
16
25
32
1.96
37536986--37537036
24
2.1
24
82
7
59
17
41
5
35
1.74
37546244--37546299
3
18.7
3
96
0
103
0
32
0
67
0.91
37547193--37547246
25
2.1
26
86
10
76
62
1
3
31
1.23
37547356--37547397
21
2.0
20
86
13
59
19
9
50
21
1.75
37558878--37558960
43
2.0
39
81
9
94
48
3
22
25
1.67
37568358--37568401
21
2.1
21
84
16
56
22
6
15
54
1.65
37569887--37569947
27
2.3
27
82
0
68
34
19
14
31
1.92
37573909--37573946
20
1.9
20
84
10
51
23
10
18
47
1.79
37580062--37580092
9
3.6
9
95
4
55
48
0
51
0
1.00
37582622--37582756
28
4.8
28
80
1
137
17
23
15
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37582622--37582770
56
2.7
56
82
6
167
18
22
14
43
1.87
37585743--37585879
49
2.8
50
77
1
150
33
25
16
24
1.95
37586011--37586066
26
2.2
26
100
0
112
42
16
7
33
1.75
37587240--37587310
32
2.2
32
97
2
133
28
4
45
22
1.71
37591362--37591543
79
2.3
81
83
7
221
25
21
28
24
1.99
37591362--37591543
40
4.6
40
81
9
203
25
21
28
24
1.99
37591412--37591566
79
2.0
79
83
7
199
26
21
27
25
1.99
37599292--37599476
79
2.3
81
83
7
227
24
22
27
24
2.00
37599293--37599476
40
4.6
40
82
9
207
25
22
27
24
2.00
37599345--37599509
79
2.1
79
83
6
201
26
21
27
24
1.99
37602082--37602123
21
2.0
22
85
4
59
38
7
2
52
1.42
37602987--37603027
12
3.4
12
86
0
55
53
4
36
4
1.44
37602978--37603028
18
2.8
19
73
5
52
52
3
37
5
1.44
37614304--37614347
23
2.0
22
86
8
63
50
2
2
45
1.27
37614367--37614412
22
2.1
22
100
0
92
43
8
15
32
1.77
37615008--37615065
23
2.6
21
76
17
55
46
3
5
44
1.42
37616442--37616530
25
3.6
25
73
14
85
25
23
21
29
1.99
37631841--37631996
82
1.9
81
84
3
206
25
16
29
28
1.97
37631841--37631996
27
5.7
27
81
4
161
25
16
29
28
1.97
37631840--37632017
27
6.6
27
79
3
151
25
16
29
28
1.97
37631833--37632017
82
2.3
81
77
2
201
25
16
29
29
1.96
37635080--37635124
20
2.3
20
85
11
58
15
6
20
57
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37636040--37636110
19
3.7
19
67
14
65
18
19
28
33
1.95
37636046--37636126
38
2.1
37
82
8
101
22
18
23
35
1.95
37640327--37640491
49
3.3
49
64
22
124
21
9
26
43
1.82
37646815--37646856
21
2.0
21
86
9
59
40
11
4
42
1.63
37661818--37661887
25
2.8
25
76
2
70
22
22
22
31
1.98
37664252--37664474
40
5.6
40
86
3
236
24
21
27
26
1.99
37664327--37664509
79
2.3
80
82
1
226
25
20
27
25
1.99
37672085--37672307
40
5.6
40
86
3
236
24
21
27
26
1.99
37672160--37672342
79
2.3
80
82
1
226
25
20
27
25
1.99
37674018--37674293
27
10.4
27
79
3
292
35
17
20
25
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228