genome.fa.s23.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  222  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65412969--65413009	9	4.3	9	85	11	55	39	0	0	60	0.96
65412975--65413006	11	3.1	11	91	8	50	46	0	0	53	1.00
65412956--65413009	9	5.7	9	80	10	54	38	0	0	61	0.96
65413082--65413252	92	1.9	92	88	1	263	26	11	22	38	1.89
65413083--65413295	92	2.3	92	84	4	254	29	10	23	37	1.87
65419231--65419429	89	2.3	87	83	6	260	36	19	8	36	1.82
65419531--65419586	27	2.0	28	83	10	71	62	3	3	30	1.29
65420343--65420382	20	2.0	20	85	14	55	40	0	5	55	1.22
65420454--65420498	3	15.0	3	100	0	90	66	0	0	33	0.92
65423902--65423948	21	2.2	22	88	3	69	23	19	36	21	1.95
65432491--65432523	3	11.0	3	93	0	57	33	3	0	63	1.10
65432533--65432617	23	3.5	24	78	16	86	35	11	2	50	1.52
65432711--65432777	13	5.2	12	73	16	55	28	4	1	65	1.21
65432691--65432769	27	2.7	29	75	15	83	30	7	2	59	1.38
65441641--65441674	6	5.7	6	96	0	59	67	11	0	20	1.21
65441739--65441805	26	2.5	27	79	13	68	71	2	4	20	1.17
65445303--65445379	31	2.5	31	82	0	91	41	15	11	31	1.83
65446142--65446181	19	2.1	19	85	0	53	35	7	2	55	1.42
65446450--65446514	23	2.9	22	84	6	94	36	32	0	30	1.58
65449601--65449631	11	2.8	11	95	0	53	19	48	3	29	1.64
65450176--65450268	18	5.2	18	90	0	141	29	24	16	30	1.96
65454322--65454352	11	2.8	11	95	0	53	19	48	3	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65456912--65456957	18	2.5	19	85	3	67	65	2	2	30	1.16
65457680--65457706	9	3.0	9	100	0	54	33	11	44	11	1.75
65461742--65461784	22	2.0	22	90	0	68	23	2	0	74	0.93
65461733--65461814	42	2.0	41	82	2	101	24	2	0	73	0.96
65465479--65465514	11	3.2	11	88	4	54	50	0	50	0	1.00
65466451--65467666	132	9.2	132	87	2	1383	29	26	16	27	1.97
65466446--65467666	88	13.9	88	82	2	1161	29	26	16	28	1.97
65466640--65467674	220	4.7	220	89	1	1617	29	26	16	28	1.97
65480292--65480327	11	3.2	11	88	4	54	50	0	50	0	1.00
65493047--65493183	51	2.7	51	79	0	175	40	13	6	39	1.71
65495776--65495909	51	2.6	51	78	0	160	40	12	6	40	1.70
65499499--65499539	12	3.4	12	80	12	57	29	31	12	26	1.92
65504053--65504077	3	8.3	3	100	0	50	68	0	0	32	0.90
65506033--65507730	842	2.0	844	90	4	2710	30	15	22	31	1.95
65509088--65509165	37	2.1	37	95	0	138	23	20	15	41	1.90
65511073--65511138	31	2.2	30	83	2	78	51	10	7	30	1.64
65511089--65511161	31	2.4	31	86	4	94	46	9	9	34	1.69
65513464--65513991	215	2.5	213	88	3	781	28	15	19	37	1.92
65513464--65513991	108	4.9	107	91	1	765	28	15	19	37	1.92
65514510--65514544	3	11.7	3	93	0	61	62	2	0	34	1.10
65519145--65519178	17	2.0	17	94	0	59	44	50	0	5	1.26
65523784--65523817	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65524511--65524549	20	2.0	20	84	0	51	35	5	7	51	1.53
65541557--65541608	21	2.7	19	79	8	52	59	0	1	38	1.08
65544383--65544442	27	2.2	27	96	3	111	31	23	13	31	1.93
65550751--65550843	18	5.2	18	90	0	150	32	15	23	29	1.95
65555458--65555520	31	2.1	30	85	8	83	49	3	3	44	1.34
65555508--65555560	21	2.7	19	79	5	52	60	0	0	39	0.97
65559949--65559982	17	2.0	17	94	0	59	5	0	50	44	1.26
65564588--65564621	17	2.0	17	94	0	59	5	0	50	44	1.26
65570390--65570439	25	2.0	25	100	0	100	36	24	0	40	1.55
65571501--65571537	19	1.9	19	88	0	56	37	2	2	56	1.28
65608938--65608995	31	1.9	30	93	6	100	63	6	10	18	1.47
65621376--65621500	60	2.1	61	96	1	234	27	18	14	40	1.89
65631672--65631706	16	2.2	16	94	0	61	25	8	22	42	1.82
65632984--65633035	23	2.3	23	80	6	61	32	1	0	65	1.04
65634716--65634749	10	3.4	10	83	0	50	61	17	2	17	1.46
65641834--65641910	14	5.0	15	71	20	52	42	15	9	32	1.78
65641850--65641889	20	2.0	20	90	0	62	50	12	10	27	1.72
65641838--65641904	34	1.9	35	90	3	109	46	13	8	31	1.74
65641873--65641912	14	2.9	14	84	0	53	42	17	7	32	1.77
65642527--65642687	54	2.8	60	84	11	244	31	17	21	29	1.96
65643678--65643720	14	3.2	14	77	12	54	41	0	0	58	0.98
65648748--65648788	21	1.9	22	90	5	66	21	14	12	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65656089--65656168	42	2.0	39	85	5	97	31	7	1	60	1.33
65657384--65657432	21	2.3	21	85	3	62	44	0	2	53	1.12
65658076--65658116	19	2.4	17	81	18	50	46	0	0	53	1.00
65659166--65659215	17	2.7	20	78	18	70	10	0	44	46	1.37
65663807--65663856	17	2.7	20	78	18	70	10	0	44	46	1.37
65671683--65671720	15	2.4	16	95	4	69	18	5	10	65	1.41
65672393--65672437	23	2.0	23	82	8	56	20	8	0	71	1.12
65675407--65675439	16	2.0	17	88	5	50	63	0	3	33	1.10
65676146--65676192	23	2.1	23	84	4	60	27	12	10	48	1.74
65676244--65676455	31	7.5	30	65	27	99	33	1	18	46	1.60
65676191--65676533	82	4.2	82	93	1	564	33	2	17	46	1.60
65680365--65680411	21	2.2	22	92	3	78	21	19	38	21	1.94
65682937--65682977	19	2.4	17	81	18	50	46	0	0	53	1.00
65692086--65692123	19	2.0	19	85	10	51	28	7	26	36	1.84
65692204--65692241	16	2.5	15	84	16	51	23	2	2	71	1.12
65707229--65707269	21	2.0	21	90	0	64	29	21	29	19	1.98
65712026--65712067	20	2.1	20	90	0	66	40	11	16	30	1.85
65712076--65712106	15	2.1	15	100	0	62	22	12	25	38	1.90
65713445--65713497	19	2.8	19	75	16	56	52	15	0	32	1.42
65713720--65713774	15	3.7	15	77	0	56	50	3	12	32	1.58
65716107--65716154	21	2.2	21	85	7	60	43	2	10	43	1.50
65723771--65723816	22	2.1	22	83	0	56	23	8	8	58	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65725514--65725578	31	2.2	29	86	5	85	49	24	7	18	1.74
65731157--65731205	25	2.0	25	100	0	98	36	8	0	55	1.30
65731243--65731327	27	3.2	27	86	5	120	30	22	27	20	1.98
65731401--65731439	19	2.1	19	85	4	53	35	7	0	56	1.28
65731655--65731724	19	3.7	19	78	3	88	38	10	0	51	1.36
65734970--65734995	2	13.0	2	100	0	52	50	0	0	50	1.00
65753316--65753405	17	5.2	18	81	10	107	32	14	24	28	1.94
65753317--65753405	35	2.5	35	87	7	135	32	14	23	29	1.94
65753316--65753402	18	4.9	18	84	4	115	32	14	24	28	1.95
65758001--65758093	18	5.2	18	86	0	123	31	12	24	31	1.93
65757999--65758093	36	2.6	36	86	6	147	30	13	24	31	1.94
65762803--65762837	17	2.1	17	94	0	61	45	5	14	34	1.68
65768380--65768473	45	2.1	45	100	0	188	35	13	23	27	1.93
65771592--65771639	9	5.4	9	87	5	71	43	20	10	25	1.83
65771671--65771718	6	8.0	6	95	0	87	18	0	16	64	1.29
65771672--65771728	18	3.2	16	81	18	60	21	0	14	64	1.28
65785561--65785615	27	2.0	27	100	0	110	21	0	29	49	1.50
65791432--65791477	24	2.0	23	82	4	56	60	2	8	28	1.38
65793340--65793379	20	2.0	20	85	0	53	50	15	10	25	1.74
65793328--65793394	34	1.9	35	87	3	100	46	14	8	29	1.76
65811296--65811341	24	1.9	24	81	0	56	36	2	2	58	1.22
65823221--65823258	17	2.2	18	90	4	60	60	0	21	18	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65824826--65824877	15	3.4	15	75	15	61	50	1	1	46	1.23
65824827--65824920	33	2.9	34	84	9	115	51	3	3	42	1.34
65834120--65834160	19	2.2	19	100	0	82	31	21	17	29	1.96
65839454--65839483	14	2.1	14	100	0	60	6	16	43	33	1.74
65844577--65844608	14	2.3	14	100	0	64	6	15	46	31	1.71
65845257--65845295	16	2.4	16	91	0	60	82	7	0	10	0.86
65845928--65846026	19	5.3	19	80	4	130	39	12	0	48	1.40
65845936--65846032	18	5.3	18	80	4	122	38	12	0	49	1.41
65845928--65846032	37	2.8	37	100	0	210	39	12	0	48	1.41
65846058--65846341	37	7.7	37	94	0	505	49	0	11	39	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228