genome.fa.s23.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  144  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43415120--43415146	14	1.9	14	100	0	54	14	14	0	70	1.17
43423187--43423221	16	2.2	16	89	0	52	42	0	31	25	1.55
43423762--43423829	27	2.5	28	74	13	68	45	1	4	48	1.31
43436923--43436952	14	2.1	14	100	0	60	33	6	30	30	1.83
43438149--43438190	22	1.9	22	85	9	59	52	0	0	47	1.00
43441815--43441874	27	2.2	27	82	5	68	20	11	26	41	1.86
43441828--43441888	27	2.3	27	91	8	106	16	13	22	47	1.81
43441842--43441904	27	2.3	27	86	0	81	19	12	25	42	1.86
43449179--43449233	24	2.3	24	96	0	101	45	7	10	36	1.67
43451992--43452084	29	3.2	29	77	7	89	22	24	16	36	1.94
43451994--43452141	59	2.5	59	81	4	149	23	25	12	37	1.91
43452061--43452193	29	4.5	30	69	9	85	23	28	9	38	1.86
43458019--43458180	29	5.6	29	76	7	123	23	26	12	37	1.90
43458019--43458242	58	3.8	58	74	10	170	23	25	12	39	1.89
43458140--43458297	29	5.4	29	85	2	194	24	24	10	41	1.85
43458111--43458297	87	2.1	87	82	9	222	24	24	11	40	1.87
43465597--43465712	46	2.6	45	89	6	175	27	25	13	33	1.94
43471794--43471822	14	2.1	14	100	0	58	51	20	6	20	1.70
43475072--43475184	28	4.1	28	85	7	151	30	23	22	23	1.99
43475296--43475419	26	4.8	25	75	11	99	45	20	17	16	1.86
43475286--43475419	52	2.6	51	85	2	160	45	20	17	17	1.86
43475600--43475713	27	4.2	27	79	7	70	19	13	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43475641--43475943	54	5.6	55	82	5	336	22	14	18	44	1.86
43475613--43475970	27	13.4	26	76	11	196	21	14	18	45	1.85
43475613--43475970	81	4.5	78	77	12	323	21	14	18	45	1.85
43482595--43482701	28	3.9	28	87	1	144	29	23	22	24	1.99
43482817--43482891	26	2.9	26	83	0	78	46	21	14	17	1.83
43483087--43483355	27	10.0	26	78	7	222	23	11	19	44	1.84
43483128--43483355	81	2.8	80	85	5	291	24	11	19	44	1.83
43485382--43485411	14	2.1	14	100	0	60	26	13	6	53	1.64
43494457--43494496	20	2.0	20	95	0	71	50	0	17	32	1.47
43505435--43505459	11	2.3	11	100	0	50	36	0	16	48	1.46
43518086--43518149	32	2.0	32	87	6	94	34	0	4	60	1.17
43521121--43521153	9	3.8	9	88	4	50	9	12	12	66	1.44
43521135--43521227	46	2.0	46	97	0	177	29	6	12	51	1.65
43522700--43522727	14	2.0	14	100	0	56	78	0	7	14	0.95
43527031--43527070	21	1.9	21	89	0	62	37	7	0	55	1.29
43529900--43530082	50	3.7	50	84	0	204	22	29	20	27	1.98
43529900--43530081	100	1.8	100	81	0	229	22	29	20	27	1.98
43535983--43536052	27	2.6	27	95	2	113	31	28	12	27	1.93
43535983--43536077	28	3.4	28	89	2	129	32	28	12	26	1.93
43540307--43540357	24	2.1	24	92	0	84	37	25	13	23	1.92
43540569--43540617	20	2.5	20	81	15	66	12	24	6	57	1.58
43540907--43541056	50	3.0	49	78	3	156	18	32	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43543461--43543496	17	2.1	17	89	0	54	47	2	11	38	1.54
43548896--43549288	27	14.6	27	77	7	372	40	19	16	23	1.91
43549557--43549607	26	2.0	26	84	0	66	23	19	21	35	1.96
43551117--43551264	27	5.5	27	87	1	181	40	18	20	20	1.91
43551666--43551725	29	2.0	32	87	9	90	30	15	13	41	1.85
43556323--43556357	18	1.9	18	94	0	61	77	5	5	11	1.12
43565212--43565243	16	2.0	16	93	0	55	59	0	15	25	1.36
43565705--43565879	90	1.9	90	95	0	314	31	12	21	34	1.91
43570350--43570483	50	2.7	50	83	3	162	24	20	25	29	1.99
43570350--43570491	51	2.8	49	82	3	167	25	20	25	28	1.99
43570490--43570578	46	2.0	44	86	4	124	24	16	25	32	1.96
43574756--43574978	40	5.6	40	85	3	227	24	21	27	26	1.99
43574831--43575013	79	2.3	80	81	1	217	25	21	27	25	1.99
43582593--43582815	40	5.6	40	85	3	227	24	21	27	26	1.99
43582668--43582850	79	2.3	80	81	1	217	25	21	27	25	1.99
43584417--43584467	23	2.2	24	82	10	61	64	1	23	9	1.34
43584570--43584619	16	3.1	16	71	23	50	54	6	26	14	1.63
43584548--43584619	33	2.2	33	85	5	92	52	6	27	12	1.64
43588607--43588660	21	2.5	22	82	8	58	53	9	9	27	1.63
43591815--43591866	19	2.8	18	74	8	50	75	5	3	15	1.14
43591847--43591879	16	2.0	17	88	5	50	69	3	0	27	1.03
43595726--43595774	21	2.3	21	79	6	55	18	16	28	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43597176--43597319	49	2.9	49	80	6	164	29	22	27	21	1.99
43600427--43600451	13	1.9	13	100	0	50	56	28	0	16	1.41
43606802--43606837	11	3.4	10	92	3	54	11	2	0	86	0.68
43616278--43616341	31	2.1	31	96	0	119	39	6	6	48	1.54
43616725--43616805	28	2.9	28	77	0	90	33	25	20	19	1.97
43617149--43617389	27	8.9	26	82	8	136	18	21	18	41	1.90
43617148--43617399	54	4.7	54	84	3	303	19	20	18	42	1.90
43617176--43617399	81	2.8	81	88	0	331	19	20	17	41	1.90
43621419--43621465	21	2.2	21	96	0	85	21	14	10	53	1.71
43626067--43626114	17	2.9	17	78	3	53	20	10	12	56	1.65
43646262--43646306	17	2.6	17	92	0	72	33	8	15	42	1.78
43647039--43647107	35	2.0	35	88	0	102	39	20	11	28	1.87
43650186--43650217	3	10.7	3	93	0	55	37	0	62	0	0.95
43650232--43650287	20	2.8	21	76	15	64	69	1	26	1	1.08
43650506--43650685	76	2.3	76	80	5	211	31	5	13	49	1.65
43650457--43650677	40	5.6	41	71	15	155	33	5	11	49	1.62
43653538--43653579	8	5.4	8	80	5	50	26	0	23	50	1.50
43654316--43654375	26	2.3	26	80	11	70	60	10	6	23	1.52
43656034--43656879	157	5.3	159	92	2	1423	29	8	8	54	1.60
43656034--43656879	319	2.7	317	93	2	1446	29	8	8	54	1.60
43657043--43657189	30	5.4	30	78	17	144	61	8	5	23	1.46
43657066--43657124	12	4.8	12	85	8	82	67	8	0	23	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43657066--43657127	20	3.2	20	78	15	67	67	8	0	24	1.17
43657027--43657157	38	3.4	37	78	18	144	62	7	3	25	1.39
43657424--43657532	3	36.3	3	70	14	73	0	34	1	62	1.12
43660714--43660937	113	2.0	114	94	1	396	34	19	9	36	1.84
43660986--43661032	6	7.7	6	90	4	76	38	12	0	48	1.41
43660986--43661036	18	2.8	18	90	3	84	39	11	0	49	1.40
43663068--43663109	21	2.0	21	85	0	57	19	7	14	59	1.57
43664465--43664512	19	2.6	18	75	21	53	68	2	8	20	1.26
43664698--43664764	8	8.4	8	75	14	50	53	1	5	38	1.34
43664866--43664963	3	32.7	3	89	0	70	53	11	0	35	1.37
43668709--43668893	79	2.3	81	83	7	227	24	22	27	24	2.00
43668710--43668893	40	4.6	40	82	9	207	25	22	27	24	2.00
43668762--43668926	79	2.1	79	83	6	201	26	21	27	24	1.99
43673006--43673067	31	2.0	31	96	0	115	32	11	12	43	1.79
43673008--43673078	31	2.3	30	88	9	106	30	11	14	43	1.80
43673595--43673619	11	2.3	11	100	0	50	44	0	8	48	1.32
43678556--43678617	32	2.0	31	84	9	81	46	4	6	41	1.51
43680277--43680307	15	2.1	14	94	5	53	54	0	9	35	1.33
43687409--43687684	27	10.3	27	83	3	315	42	21	16	19	1.90
43688579--43688604	3	8.7	3	100	0	52	69	30	0	0	0.89
43689537--43689634	21	4.7	21	79	14	67	38	17	7	36	1.77
43689537--43689594	22	2.6	22	81	7	64	41	17	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43689573--43689647	19	3.8	19	93	6	132	34	17	10	37	1.84
43690161--43690268	44	2.5	44	84	3	128	30	23	13	32	1.93
43690298--43690582	88	3.3	87	69	15	264	25	25	20	28	1.99
43690269--43690668	172	2.3	174	86	3	574	27	24	19	28	1.99
43690593--43691129	44	12.4	44	88	5	812	29	27	16	25	1.97
43690422--43691129	132	5.4	132	85	8	757	29	27	17	26	1.97
43690641--43690705	34	1.9	34	90	0	103	27	26	23	23	2.00
43697599--43697658	3	20.0	3	92	0	102	66	0	1	31	1.01
43697837--43697879	23	1.9	23	95	4	79	55	2	9	32	1.44
43698574--43698631	22	2.6	22	84	7	73	43	17	3	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228