genome.fa.s23.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  158  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47419326--47419451	44	2.9	44	82	4	155	27	25	18	28	1.98
47430250--47430278	10	2.7	11	89	10	51	79	0	0	20	0.74
47431174--47431205	15	2.1	15	100	0	64	31	21	18	28	1.97
47433116--47433196	26	3.0	27	76	7	74	34	19	23	22	1.96
47453217--47453242	12	2.2	12	100	0	52	7	15	30	46	1.74
47453311--47453738	114	3.8	113	88	1	606	24	22	24	28	2.00
47453311--47453738	227	1.9	228	87	2	637	24	22	24	28	2.00
47454008--47454066	21	2.7	22	82	10	68	20	0	40	38	1.53
47454026--47454091	22	3.1	22	76	8	57	22	1	43	31	1.62
47454496--47454603	44	2.4	44	78	3	117	39	11	12	37	1.78
47454643--47454871	101	2.3	101	95	1	408	42	13	13	30	1.83
47454756--47455010	140	1.8	139	97	0	483	43	14	13	29	1.83
47454896--47455111	100	2.1	101	98	0	416	43	13	12	29	1.81
47454554--47455393	240	3.5	241	94	2	1417	41	13	14	30	1.84
47454996--47455252	141	1.8	141	99	0	505	42	14	13	29	1.84
47455136--47455349	102	2.2	97	90	6	340	43	13	12	30	1.81
47459508--47459705	43	4.6	43	84	3	159	27	17	27	27	1.98
47459551--47459709	43	3.7	43	87	0	192	27	20	27	24	1.99
47462037--47462076	20	2.0	20	100	0	80	45	15	20	20	1.86
47464471--47464512	15	2.9	15	86	10	52	57	2	0	40	1.12
47464471--47464501	15	2.1	15	94	5	55	58	0	0	41	0.98
47467019--47467098	19	4.3	20	81	9	66	35	0	2	62	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47467008--47467098	9	10.1	9	72	17	73	35	1	2	61	1.15
47471159--47471192	3	11.3	3	93	0	50	32	5	32	29	1.81
47479548--47479589	19	2.2	20	86	4	59	11	35	0	52	1.38
47480537--47480561	5	5.0	5	100	0	50	20	0	0	80	0.72
47485506--47485610	53	2.0	53	88	3	158	47	16	8	27	1.75
47490240--47490302	18	3.2	19	73	13	56	53	6	0	39	1.26
47497173--47497219	24	2.0	24	83	8	60	42	10	10	36	1.74
47502293--47502328	17	2.1	17	89	0	54	22	19	2	55	1.56
47508847--47508933	21	4.1	21	75	7	68	40	24	18	17	1.91
47516720--47516780	21	2.8	22	85	9	90	36	27	22	13	1.92
47516711--47516815	23	4.8	23	81	9	87	38	24	20	17	1.93
47524683--47524733	23	2.2	23	89	0	75	41	21	7	29	1.81
47536685--47536729	19	2.3	20	82	17	60	33	2	0	64	1.06
47537779--47537803	7	3.6	7	100	0	50	16	28	0	56	1.41
47541685--47541722	15	2.5	16	83	12	53	36	0	13	50	1.42
47549482--47549563	37	2.2	37	89	2	121	14	9	32	42	1.79
47555036--47555116	26	3.2	25	73	18	69	32	8	14	44	1.76
47555175--47555270	51	1.9	51	84	2	131	30	14	23	31	1.95
47563130--47563154	13	1.9	13	100	0	50	24	8	28	40	1.83
47563914--47564044	64	2.0	64	98	0	253	40	14	16	28	1.88
47566571--47566613	22	2.0	22	85	0	59	51	16	32	0	1.45
47567265--47567338	27	2.8	26	91	6	121	36	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47567265--47567368	27	4.0	26	85	8	97	40	1	0	57	1.10
47567329--47567368	13	3.2	12	86	10	53	47	0	0	52	1.00
47567612--47567661	26	1.9	26	91	0	82	38	26	4	32	1.75
47567612--47567664	13	4.1	13	80	0	61	37	26	5	30	1.79
47577159--47577233	37	2.0	37	87	5	107	22	32	12	33	1.91
47591954--47592017	22	2.9	22	79	4	76	23	18	12	45	1.84
47597218--47597367	45	3.2	45	66	18	124	29	22	19	28	1.98
47597383--47597950	44	12.9	43	77	7	525	29	26	16	26	1.97
47597438--47597958	132	4.0	132	96	0	938	29	26	16	26	1.97
47597438--47597955	263	2.0	263	95	0	939	29	26	16	26	1.97
47612736--47612785	26	1.9	26	84	8	66	20	10	0	70	1.16
47630479--47630626	66	2.2	66	85	6	197	47	12	9	30	1.72
47636640--47637285	51	12.7	50	79	4	589	28	14	27	29	1.95
47636636--47637272	102	6.3	102	92	1	958	28	14	27	29	1.95
47644394--47644426	16	1.9	18	88	11	52	33	9	0	57	1.30
47645066--47645504	219	2.0	219	95	0	779	27	17	25	30	1.97
47646379--47646435	17	3.1	19	77	12	64	42	7	17	33	1.76
47647467--47647501	17	2.1	17	88	0	52	45	2	5	45	1.41
47648341--47648371	14	2.3	13	94	5	53	51	0	9	38	1.35
47649548--47649602	25	2.1	27	80	12	62	40	1	5	52	1.35
47650889--47650932	12	3.7	12	87	0	61	2	0	43	54	1.12
47650898--47650933	2	18.0	2	88	0	54	0	0	44	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47662868--47662916	16	3.1	16	80	16	57	59	4	0	36	1.17
47663803--47663830	7	4.0	7	100	0	56	14	0	0	85	0.59
47664955--47665001	15	3.2	15	82	11	53	38	8	6	46	1.60
47668591--47668644	25	2.2	25	89	0	81	62	7	9	20	1.48
47671244--47671305	31	2.0	31	100	0	124	45	16	9	29	1.79
47671452--47671582	50	2.6	52	79	6	151	37	12	15	34	1.86
47698740--47698794	24	2.2	24	84	9	67	40	27	3	29	1.73
47711290--47711362	35	2.1	36	94	2	130	31	26	5	36	1.79
47713978--47714053	36	2.1	36	87	4	109	32	10	19	36	1.86
47713978--47714065	36	2.4	36	86	3	106	32	9	18	39	1.82
47714676--47714776	17	5.9	17	71	0	67	25	10	18	44	1.83
47716450--47716483	14	2.4	14	90	0	50	38	0	11	50	1.39
47716597--47716647	20	2.5	21	78	9	61	54	0	7	37	1.29
47716681--47716770	3	28.7	3	77	14	76	63	1	5	30	1.24
47716682--47716770	18	5.4	17	74	16	89	62	1	5	30	1.25
47718058--47718159	43	2.4	43	86	0	141	24	25	15	34	1.95
47718452--47718703	89	2.7	93	76	11	250	29	25	17	27	1.97
47718273--47718747	44	10.6	43	71	15	198	29	21	18	30	1.97
47718774--47718971	44	4.5	44	75	8	186	24	26	19	29	1.98
47718779--47718971	89	2.2	89	91	0	305	24	26	19	28	1.99
47718983--47719453	45	10.5	45	85	3	635	30	26	16	26	1.97
47719004--47719453	90	5.0	90	92	0	720	30	26	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47725741--47725786	17	2.5	19	82	10	60	54	0	2	43	1.12
47725654--47725765	52	2.2	50	78	12	118	51	4	4	39	1.42
47726226--47726262	18	2.0	18	89	5	56	35	0	0	64	0.94
47730575--47730622	18	2.7	17	81	9	60	41	4	16	37	1.68
47732093--47732142	14	3.6	14	74	12	50	46	0	4	50	1.20
47732124--47732173	6	8.7	6	77	14	52	50	2	0	48	1.12
47732124--47732173	11	4.3	12	78	12	52	50	2	0	48	1.12
47733424--47733478	3	18.3	3	100	0	110	34	0	0	65	0.93
47735915--47736030	34	3.4	34	92	0	196	41	27	19	11	1.86
47737054--47737100	24	2.0	24	91	0	76	40	4	2	53	1.32
47737298--47737342	23	1.9	23	81	4	54	22	6	8	62	1.48
47744435--47744473	20	2.0	20	89	0	60	74	5	2	17	1.12
47745913--47746051	19	7.0	20	67	20	62	58	1	4	35	1.27
47745914--47746062	9	15.2	9	69	19	61	58	1	4	36	1.25
47746013--47746052	21	1.9	21	84	0	53	60	2	2	35	1.24
47746625--47746692	31	2.4	28	83	16	86	42	11	11	33	1.78
47746737--47746776	21	1.9	20	89	5	53	55	0	10	35	1.34
47746737--47746785	22	2.3	21	82	10	55	59	0	8	32	1.27
47747964--47748027	32	2.0	32	85	11	87	43	0	1	54	1.09
47762369--47762656	96	3.0	95	84	9	367	44	1	17	37	1.58
47762566--47762739	82	2.1	84	94	2	307	43	1	17	37	1.60
47762825--47763364	126	4.3	126	94	0	900	35	17	19	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47766633--47766694	21	3.0	21	74	9	63	8	20	41	29	1.81
47769291--47769357	35	1.9	35	87	3	100	32	8	13	44	1.75
47769306--47769345	20	2.0	20	85	0	53	30	10	12	47	1.74
47774008--47774053	3	15.3	3	90	0	74	34	4	0	60	1.16
47782101--47782179	3	25.7	3	72	12	54	30	5	3	60	1.36
47782522--47782569	15	3.3	14	83	13	53	18	6	2	72	1.15
47783499--47783543	18	2.4	19	82	14	58	57	6	2	33	1.37
47783761--47783801	12	3.5	12	75	18	50	75	7	12	4	1.16
47804734--47804801	34	2.0	33	88	8	102	32	25	7	35	1.83
47815674--47815754	42	1.9	42	87	0	117	38	16	28	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228