genome.fa.s23.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  11  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3959282--3959959	90	7.5	90	92	0	1115	29	24	17	29	1.97
3964584--3964643	30	2.0	31	83	3	77	41	0	38	20	1.52
3964857--3964893	9	4.1	9	92	0	65	29	10	13	45	1.77
3965017--3965047	16	1.9	16	100	0	62	35	12	12	38	1.82
3971352--3972342	500	2.0	500	95	0	1784	33	22	18	25	1.97
3979419--3979455	19	2.0	19	89	5	58	48	10	18	21	1.78
3979675--3979740	30	2.2	30	86	2	87	45	4	3	46	1.38
3980290--3980340	22	2.3	23	83	9	63	52	1	5	39	1.37
3980453--3980506	23	2.4	23	79	14	67	46	5	0	48	1.25
3980447--3980506	22	2.7	23	78	14	72	46	5	0	48	1.24
3980548--3980598	18	3.0	17	76	18	61	50	0	0	49	1.00
4017431--4017517	36	2.4	36	96	0	156	31	12	25	31	1.93
4017431--4017523	18	5.2	18	88	0	132	30	13	25	30	1.94
4018866--4018899	17	2.0	17	88	11	52	55	8	0	35	1.31
4019760--4019963	44	4.6	45	82	4	234	30	20	15	33	1.94
4019760--4019963	89	2.3	89	85	0	264	30	20	15	33	1.94
4022129--4022408	51	5.4	50	89	6	380	35	15	22	26	1.94
4022222--4022258	7	5.3	7	93	0	56	37	13	29	18	1.90
4022129--4022408	109	2.7	102	88	5	391	35	15	22	26	1.94
4023051--4023148	45	2.2	45	84	0	124	29	18	18	33	1.95
4036827--4036857	16	1.9	16	100	0	62	19	19	6	54	1.65
4040766--4040816	3	17.3	3	79	4	59	33	0	3	62	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4041007--4041100	38	2.5	37	78	13	95	37	13	1	47	1.50
4043314--4043364	23	2.3	21	81	15	59	13	15	0	70	1.17
4043849--4043897	13	3.8	13	86	7	57	2	8	8	81	0.94
4043881--4043926	5	9.4	5	84	15	53	0	17	0	82	0.67
4043839--4043923	35	2.4	36	79	14	97	1	11	5	81	0.92
4043840--4043926	22	4.0	22	78	12	81	1	11	5	81	0.91
4049593--4049879	44	6.6	45	68	13	129	29	18	19	32	1.96
4049691--4049869	85	2.1	85	83	5	220	30	20	18	30	1.97
4049508--4049803	130	2.3	129	80	6	341	29	20	18	31	1.97
4049968--4050543	50	11.5	50	71	0	378	26	23	20	29	1.99
4049939--4050546	100	6.1	100	90	0	910	27	22	20	29	1.98
4050744--4051081	88	3.9	87	86	4	447	28	26	17	27	1.97
4050744--4051082	176	1.9	172	88	7	506	28	26	17	28	1.97
4050773--4051081	45	7.0	44	63	7	142	28	26	16	27	1.97
4054098--4054140	22	1.9	23	86	13	63	60	2	6	30	1.35
4054278--4054314	11	3.2	12	81	11	51	24	5	2	67	1.25
4055963--4056047	44	1.9	44	85	4	118	28	23	25	22	1.99
4056584--4056627	20	2.3	19	84	4	52	29	0	6	63	1.20
4067858--4067895	19	2.0	19	100	0	76	52	15	5	26	1.64
4068700--4068779	37	2.1	38	82	11	94	35	8	2	53	1.45
4069777--4069830	21	2.5	21	80	11	56	57	3	5	33	1.40
4089870--4089939	11	6.5	11	73	12	65	60	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4089923--4089970	18	2.8	17	78	6	51	60	2	0	37	1.09
4090561--4090591	11	2.8	11	95	0	53	19	29	3	48	1.64
4090547--4090612	11	5.9	11	75	20	50	22	27	1	48	1.59
4090599--4090654	29	2.0	28	82	10	69	30	17	1	50	1.57
4092758--4092805	21	2.3	21	85	7	62	31	37	20	10	1.87
4092773--4092815	21	2.0	21	90	0	68	27	41	20	9	1.83
4093056--4093136	27	3.2	26	75	20	82	45	29	1	23	1.61
4093065--4093115	21	2.4	21	96	0	93	45	33	0	21	1.52
4093056--4093158	48	2.1	50	85	3	138	47	28	0	23	1.58
4093304--4093353	16	2.8	19	66	27	54	50	12	0	38	1.40
4093192--4093388	104	1.9	102	86	4	279	43	10	6	39	1.65
4096389--4096705	125	2.5	124	91	3	510	28	21	17	33	1.95
4096916--4096993	40	2.0	40	84	0	102	23	30	23	23	1.99
4098654--4098680	8	3.4	8	100	0	54	11	0	0	88	0.50
4099264--4099328	3	21.3	3	76	14	62	32	1	4	61	1.26
4099259--4099328	14	4.9	14	81	11	63	31	2	5	60	1.35
4100855--4100921	3	23.3	3	83	11	79	31	1	1	65	1.10
4101029--4101053	13	1.9	13	100	0	50	40	0	4	56	1.18
4108261--4108457	109	1.8	108	89	1	313	24	17	11	46	1.80
4108967--4109162	97	2.0	96	94	1	340	30	18	22	29	1.97
4109277--4110619	44	30.5	44	74	7	793	27	16	26	29	1.97
4109277--4110611	132	10.1	132	90	1	1883	27	16	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4112113--4112171	3	20.3	3	80	13	61	30	1	1	66	1.12
4112278--4112302	13	1.9	13	100	0	50	40	0	4	56	1.18
4120637--4120667	16	1.9	16	100	0	62	51	6	3	38	1.44
4131765--4131940	88	2.0	88	97	0	334	39	19	19	21	1.92
4134498--4134528	6	5.2	6	100	0	62	67	0	0	32	0.91
4144157--4144188	16	2.0	16	93	0	55	34	0	3	62	1.11
4145680--4145726	22	2.2	21	82	17	53	42	2	0	55	1.12
4151017--4151054	20	2.0	20	89	5	60	57	2	0	39	1.12
4152445--4152505	26	2.2	28	80	13	74	57	3	0	39	1.15
4154548--4154590	22	1.9	23	90	4	70	27	9	9	53	1.63
4154998--4155063	31	2.1	31	82	0	78	16	7	12	63	1.50
4156698--4157198	146	3.4	145	88	4	717	52	6	9	30	1.61
4163306--4163373	31	2.2	31	84	7	86	58	7	5	27	1.48
4167598--4167635	20	1.9	20	84	10	51	15	7	2	73	1.17
4175452--4175498	18	2.5	19	86	3	60	42	4	2	51	1.33
4176029--4176096	30	2.2	31	80	15	79	48	5	0	45	1.26
4192953--4192983	5	6.4	5	92	7	55	61	0	0	38	0.96
4194689--4195039	94	3.7	94	77	7	275	28	12	17	41	1.86
4211923--4212195	90	3.0	90	93	0	465	38	19	26	16	1.92
4218529--4218570	18	2.2	20	87	8	61	35	0	4	59	1.19
4218526--4218571	19	2.3	21	82	14	62	36	0	4	58	1.18
4223896--4223941	14	3.3	14	78	0	56	52	4	4	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4230921--4231416	165	3.0	163	90	4	771	21	22	25	30	1.99
4238906--4238939	16	2.1	16	94	0	59	41	2	8	47	1.50
4239010--4239057	25	1.9	25	95	0	87	50	8	2	39	1.44
4239237--4239348	27	4.3	27	78	13	126	51	5	2	40	1.39
4239460--4239493	15	2.3	15	94	0	59	41	2	14	41	1.61
4239529--4239620	13	7.0	13	86	7	132	58	6	2	32	1.36
4239529--4239620	39	2.3	39	92	1	148	58	6	2	32	1.36
4241352--4241388	18	2.1	18	90	10	58	24	10	13	51	1.73
4261514--4261602	5	20.8	4	76	22	60	69	0	29	1	0.95
4261492--4261606	34	3.4	33	75	12	99	66	0	33	0	0.98
4261521--4261641	10	11.3	10	70	18	75	68	1	28	0	1.05
4261520--4261602	25	3.2	24	78	18	94	68	0	30	1	0.97
4261521--4261641	54	2.2	54	85	8	167	68	1	28	0	1.05
4261959--4262624	156	4.3	157	87	4	901	51	8	10	29	1.64
4262207--4262236	16	1.9	15	93	6	51	70	0	3	26	1.03
4261959--4262624	157	4.3	155	87	5	889	51	8	10	29	1.64
4267477--4267652	39	4.4	40	74	14	146	46	10	5	36	1.63
4267477--4267605	40	3.3	38	83	7	145	47	11	5	35	1.63
4267456--4267682	122	1.9	121	82	8	291	48	13	4	33	1.62
4268499--4268594	48	2.0	48	100	0	192	39	10	14	35	1.80
4269671--4269698	3	9.3	3	100	0	56	67	0	0	32	0.91
4272734--4272797	33	2.0	32	90	3	101	39	25	9	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4273012--4273208	41	4.8	41	92	5	317	27	22	20	28	1.99
4274744--4274768	13	1.9	13	100	0	50	68	24	0	8	1.16
4280090--4280132	21	2.0	21	86	8	61	48	4	0	46	1.22
4280507--4280567	16	3.7	16	75	14	61	36	4	3	55	1.38
4280560--4280590	16	1.9	16	93	0	53	48	3	0	48	1.17
4290038--4290107	10	7.1	10	71	7	54	27	2	0	70	1.02
4302019--4302045	4	6.8	4	100	0	54	48	0	0	51	1.00
4305271--4305356	22	4.0	22	75	13	88	59	6	10	23	1.55
4312887--4312934	22	2.2	22	85	7	62	64	0	2	33	1.05
4312920--4313083	9	18.0	9	66	16	63	62	2	4	29	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228