genome.fa.s23.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  50  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15085568--15085608	21	2.0	21	90	0	64	43	34	0	21	1.53
15085667--15086206	115	4.7	113	76	6	462	25	22	19	32	1.98
15085673--15086208	229	2.3	227	79	4	603	25	22	19	32	1.97
15085667--15086284	229	2.7	226	76	8	597	26	23	19	31	1.98
15087093--15087145	16	3.3	16	89	0	79	39	3	32	24	1.73
15087131--15087222	44	2.0	46	91	4	152	30	4	29	35	1.77
15087127--15087232	44	2.5	41	77	18	126	31	3	30	34	1.75
15087379--15087431	18	3.0	17	91	5	79	56	1	1	39	1.21
15087413--15087728	120	2.6	120	95	0	587	51	4	2	41	1.35
15087494--15087684	61	3.2	61	72	11	221	49	4	3	41	1.41
15089747--15089860	41	2.8	41	91	2	176	24	29	18	27	1.98
15089751--15089896	41	3.6	40	84	9	154	24	28	18	28	1.98
15098599--15098697	50	2.0	50	83	0	126	40	12	15	32	1.84
15098685--15098719	5	6.8	5	87	6	52	20	2	2	74	1.08
15099741--15099785	22	2.0	22	100	0	90	26	22	8	42	1.83
15101631--15101933	27	11.3	27	77	4	247	39	20	19	21	1.93
15101617--15101841	54	4.2	54	88	1	276	41	20	18	19	1.90
15101617--15101855	81	3.0	80	83	3	284	42	20	18	19	1.90
15101968--15102040	24	3.1	24	86	5	96	17	8	26	47	1.75
15102112--15102168	27	2.1	27	87	6	80	19	24	22	33	1.97
15102156--15102209	26	2.1	26	89	0	81	22	22	20	35	1.96
15102166--15102221	26	2.2	26	83	0	67	17	23	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15102212--15102299	32	2.8	32	83	0	95	21	19	21	37	1.94
15102421--15102474	26	2.1	26	85	0	72	20	25	20	33	1.97
15102428--15102479	26	2.0	26	88	0	77	23	23	19	34	1.96
15112918--15112969	26	2.0	26	100	0	104	38	23	11	26	1.89
15119154--15119220	25	2.7	25	85	0	89	31	20	20	26	1.98
15121260--15121334	27	2.8	27	89	0	114	20	12	21	46	1.82
15123908--15123952	13	3.6	12	87	6	63	0	24	0	75	0.80
15123912--15123943	15	2.1	16	94	5	57	0	25	0	75	0.81
15129275--15129330	22	2.5	22	79	2	67	10	25	41	23	1.86
15131315--15131388	31	2.4	30	80	10	87	60	5	0	33	1.19
15131563--15131609	18	2.6	19	83	10	62	44	0	29	25	1.54
15131563--15131610	9	5.3	9	75	9	53	43	0	31	25	1.55
15139019--15139411	55	7.1	55	73	3	261	28	18	24	28	1.98
15140283--15140319	19	2.0	19	94	5	67	37	0	10	51	1.37
15140289--15140340	19	2.7	20	82	11	63	34	0	9	55	1.32
15148512--15148555	18	2.4	19	81	11	56	13	27	2	56	1.49
15154818--15154862	23	2.0	23	86	4	65	46	17	2	33	1.61
15154844--15154896	19	3.0	17	76	10	61	33	18	9	37	1.83
15154815--15154872	22	2.6	22	84	7	73	43	18	1	36	1.61
15159953--15159997	23	2.0	23	91	4	74	46	15	4	33	1.66
15159950--15160007	22	2.6	22	86	7	82	43	17	3	36	1.66
15159979--15160031	19	3.0	17	81	10	70	37	18	5	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15172380--15172405	5	5.2	5	100	0	52	19	0	0	80	0.71
15175050--15175074	13	1.9	13	100	0	50	28	0	0	72	0.86
15194076--15194154	37	2.1	37	88	0	113	24	29	20	26	1.99
15194273--15194919	49	13.5	47	94	2	1001	28	29	9	32	1.88
15198146--15198290	43	3.4	43	81	6	136	30	24	15	29	1.95
15204684--15204840	43	3.7	43	81	2	174	31	24	14	29	1.94
15212882--15212939	17	3.4	18	74	6	50	65	0	1	32	1.03
15214869--15214928	31	1.9	31	83	6	77	31	6	16	45	1.74
15215782--15215811	12	2.5	12	100	0	60	13	26	0	60	1.34
15216701--15216776	9	8.4	9	76	5	73	42	21	7	28	1.81
15216709--15216776	27	2.5	27	90	4	102	41	22	8	27	1.83
15216903--15216927	13	1.9	13	100	0	50	12	0	48	40	1.40
15216898--15216941	18	2.4	18	88	0	61	13	2	43	40	1.57
15226963--15227205	50	4.7	50	81	3	252	23	27	22	27	1.99
15228489--15228756	104	2.6	105	93	1	450	29	30	20	18	1.97
15229091--15229148	30	1.9	30	82	0	71	29	24	8	37	1.85
15235977--15236244	104	2.6	105	93	1	450	29	30	20	18	1.97
15236579--15236636	30	1.9	30	82	0	71	29	24	8	37	1.85
15245864--15245901	18	2.1	18	95	0	67	39	7	10	42	1.69
15247179--15247256	6	13.5	6	82	8	81	33	6	46	14	1.70
15247179--15247256	18	4.5	18	77	7	90	33	6	46	14	1.70
15247231--15247264	15	2.3	15	89	0	50	35	2	47	14	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15247270--15247315	21	2.2	21	96	0	83	54	0	36	8	1.32
15247266--15247307	15	2.8	15	82	7	50	57	0	33	9	1.31
15277433--15277628	42	4.7	42	95	0	329	22	33	21	22	1.97
15278412--15278462	19	2.7	19	80	16	54	27	21	1	49	1.60
15279674--15279705	15	2.1	15	94	0	55	28	6	0	65	1.16
15285300--15285352	25	2.1	26	86	10	74	41	9	7	41	1.66
15285545--15285629	39	2.2	39	93	0	143	48	17	9	24	1.77
15285693--15285732	21	1.9	21	85	10	55	67	7	20	5	1.34
15287501--15287548	24	2.0	24	91	0	78	39	10	25	25	1.87
15291219--15291261	22	2.0	22	85	0	59	60	23	6	9	1.51
15292078--15292155	32	2.4	32	86	0	111	14	44	26	14	1.83
15300935--15300967	15	2.1	16	88	5	50	30	6	12	51	1.63
15307224--15307354	49	2.7	48	86	3	181	49	2	6	41	1.42
15310621--15310667	26	2.0	25	84	16	64	36	14	6	42	1.72
15310777--15310893	62	1.9	59	89	5	180	51	4	5	38	1.46
15315573--15315674	39	2.6	39	93	0	168	30	2	20	46	1.66
15318525--15318562	15	2.4	16	82	8	51	31	2	0	65	1.06
15320209--15320281	30	2.3	32	88	4	105	32	5	54	6	1.50
15320209--15320331	15	7.8	15	65	20	54	33	4	53	8	1.52
15320367--15320583	30	7.2	30	93	2	357	49	0	10	39	1.40
15321213--15321255	23	2.0	23	81	9	54	65	2	0	32	1.06
15321495--15321547	21	2.5	21	90	0	79	30	37	9	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15323417--15323478	20	3.0	20	90	4	88	54	4	4	35	1.43
15327773--15327861	46	1.9	47	88	2	135	30	23	8	37	1.86
15328968--15329022	28	2.0	28	82	10	69	63	1	0	34	1.05
15330598--15330638	17	2.5	17	81	14	50	65	0	4	29	1.13
15331291--15331332	16	2.5	17	77	14	52	71	2	21	4	1.16
15332345--15332407	26	2.4	27	79	10	78	44	7	6	41	1.59
15346534--15346643	42	2.6	42	81	7	125	30	27	15	26	1.96
15349147--15349430	49	5.7	48	81	8	291	25	11	12	51	1.73
15349147--15349430	100	2.9	99	87	2	390	25	11	12	51	1.73
15349666--15349710	21	2.1	21	100	0	90	28	22	4	44	1.72
15355260--15355564	49	6.2	49	84	4	384	24	11	13	50	1.74
15355260--15355564	100	3.1	97	87	5	418	24	11	13	50	1.74
15357319--15357484	81	2.0	82	97	1	316	36	9	4	50	1.54
15364450--15364489	16	2.5	16	91	0	62	22	22	5	50	1.68
15368428--15368464	16	2.2	17	90	4	58	16	0	8	75	1.02
15371754--15371806	27	1.9	28	84	3	72	22	1	1	73	1.03
15375074--15375101	9	3.1	9	100	0	56	10	0	0	89	0.49
15392370--15392470	44	2.3	47	79	10	113	21	26	25	25	2.00
15392395--15394169	218	8.1	218	89	1	2563	28	26	18	27	1.98
15392492--15394124	44	37.5	44	67	10	331	28	25	18	27	1.98
15394024--15394153	44	2.9	44	79	3	127	30	27	16	26	1.96
15396275--15396320	6	7.7	6	92	0	74	15	0	10	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15396235--15396279	22	2.0	22	87	8	65	2	17	0	80	0.82
15403030--15403082	25	2.1	24	83	13	63	52	0	0	47	1.00
15404655--15405002	123	2.8	120	87	5	500	29	15	21	33	1.95
15408082--15408270	61	3.2	61	62	19	155	42	8	9	39	1.69
15408033--15408386	116	3.1	116	97	0	645	42	8	9	38	1.69
15408393--15408461	29	2.3	29	92	2	111	26	0	24	49	1.51
15408421--15408681	23	10.4	23	72	21	197	28	0	24	46	1.56
15408469--15408752	29	10.4	29	76	19	242	27	0	26	46	1.53
15408684--15408772	23	3.6	23	75	9	70	25	0	28	46	1.53
15408768--15408899	70	1.9	69	92	1	219	46	12	0	40	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228