genome.fa.s23.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  105  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30499549--30499906	183	1.9	185	90	2	578	32	8	9	48	1.66
30506615--30506679	27	2.4	27	97	0	121	21	38	23	16	1.93
30507998--30508138	76	1.9	76	82	5	178	41	13	19	25	1.88
30509356--30509409	15	3.5	15	82	10	56	0	42	1	55	1.10
30510371--30510433	30	2.1	30	93	0	108	25	3	14	57	1.52
30510554--30510581	11	2.5	11	100	0	56	75	0	0	25	0.81
30512480--30512629	62	2.5	61	81	8	157	48	2	2	46	1.30
30513234--30513291	30	1.9	30	92	0	98	24	6	13	55	1.63
30515844--30515944	19	5.3	19	69	9	53	33	24	21	19	1.97
30515852--30515962	38	2.9	38	73	5	107	30	25	25	18	1.98
30515861--30515959	19	5.2	19	72	9	58	30	25	25	19	1.98
30516155--30516200	21	2.2	21	84	7	58	45	13	2	39	1.55
30517685--30517729	21	2.3	19	80	7	54	46	0	2	51	1.13
30528744--30528792	24	2.0	24	100	0	98	36	26	8	28	1.85
30546452--30546506	18	2.9	18	78	5	56	32	0	0	67	0.91
30546452--30546506	12	4.2	14	73	13	55	32	0	0	67	0.91
30559223--30559361	42	3.3	41	82	4	152	43	17	20	17	1.89
30559244--30559421	21	8.6	21	68	8	105	43	15	20	20	1.87
30560931--30560961	13	2.5	13	94	5	55	25	3	0	70	1.02
30560931--30560961	4	7.5	4	92	7	53	25	3	0	70	1.02
30568572--30568650	25	3.2	25	96	0	140	20	13	50	15	1.77
30570006--30570095	27	3.4	26	83	4	117	45	22	8	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30573464--30573660	44	4.5	42	75	9	166	28	25	20	25	1.99
30573503--30573682	44	4.2	44	76	8	122	26	23	21	28	1.99
30573752--30573948	88	2.2	88	80	1	216	23	22	22	31	1.98
30573873--30574500	88	7.1	88	68	11	417	27	23	19	30	1.98
30573884--30574627	176	4.2	176	89	2	1070	27	23	18	30	1.98
30573990--30575268	44	29.2	44	77	8	364	28	24	17	29	1.97
30574548--30575287	44	16.9	44	88	3	992	30	24	16	29	1.96
30576528--30576626	50	2.0	50	90	2	155	16	20	18	45	1.86
30577493--30577533	21	2.0	21	95	0	73	12	0	7	80	0.90
30578543--30578608	25	2.6	25	85	9	80	57	6	16	19	1.60
30583344--30583385	18	2.3	18	88	8	59	76	2	0	21	0.90
30583352--30583386	13	2.8	13	91	8	56	74	0	0	25	0.82
30583786--30584073	27	10.7	27	78	3	247	43	20	15	21	1.88
30585497--30585556	26	2.3	27	88	5	88	41	13	10	35	1.78
30601529--30601729	40	5.0	40	84	2	269	19	29	17	33	1.95
30601583--30601688	20	5.3	20	65	13	65	14	32	18	34	1.91
30601529--30601729	80	2.5	80	86	3	298	19	29	17	33	1.95
30601994--30602037	19	2.3	19	88	0	61	56	27	2	13	1.49
30604448--30604502	4	13.8	4	100	0	110	50	23	0	25	1.49
30605473--30605544	21	3.2	21	72	27	76	45	4	33	16	1.67
30605646--30605679	14	2.4	14	95	0	59	14	2	58	23	1.50
30605756--30605815	29	2.0	30	93	3	104	53	1	10	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30608288--30608339	27	1.9	27	84	0	68	30	25	15	28	1.96
30612321--30612357	13	2.7	14	76	23	51	62	2	0	35	1.10
30620521--30620583	24	2.6	24	79	0	72	66	1	0	31	1.01
30621084--30621157	37	2.0	37	97	0	139	44	5	17	32	1.71
30622174--30622230	21	2.7	21	86	0	78	22	24	15	36	1.94
30623969--30624114	20	7.3	20	67	10	93	30	19	30	18	1.96
30623955--30624167	40	5.3	40	85	1	257	30	18	29	22	1.97
30623924--30624153	120	1.9	120	83	1	300	31	17	28	22	1.97
30638091--30638260	40	4.3	40	88	0	216	24	21	28	25	1.99
30638113--30638295	79	2.3	80	81	1	217	25	20	28	25	1.99
30645220--30645406	101	1.8	101	85	5	259	28	16	25	30	1.96
30645396--30645451	23	2.5	22	78	16	69	78	1	1	17	0.92
30657981--30658035	21	2.6	21	88	0	83	21	7	40	30	1.81
30662033--30662071	18	2.2	18	85	0	51	61	2	23	12	1.43
30665041--30665140	28	3.4	28	73	15	103	11	50	6	33	1.62
30664986--30665165	60	3.1	58	79	12	213	15	48	4	31	1.64
30665125--30665201	6	12.5	6	82	9	93	18	46	1	33	1.57
30665125--30665199	13	5.5	13	82	14	98	18	45	1	34	1.58
30665126--30665201	25	2.8	25	90	9	107	18	47	1	32	1.57
30667710--30667772	21	3.1	20	77	8	65	53	15	26	3	1.57
30667733--30667769	19	1.9	19	88	0	56	51	18	27	2	1.60
30669513--30669581	9	7.8	9	72	15	54	63	0	1	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30669543--30669735	19	9.9	18	65	21	63	61	3	3	31	1.30
30669465--30669572	25	4.0	26	71	14	78	63	1	2	31	1.19
30669558--30669604	22	2.1	22	88	4	67	68	0	2	29	1.02
30669581--30669687	29	3.8	28	73	11	92	58	4	3	32	1.36
30669542--30669708	58	2.9	58	78	11	148	61	3	4	30	1.32
30669868--30669939	36	2.0	36	86	5	101	33	2	2	61	1.25
30669902--30669981	30	2.6	29	80	9	79	38	2	2	56	1.26
30670019--30670195	93	1.9	94	85	2	250	35	10	19	35	1.86
30676917--30676962	5	8.6	5	84	13	56	0	36	0	63	0.95
30676909--30676975	23	3.0	23	86	2	91	0	34	0	65	0.93
30676969--30677018	25	2.0	26	84	4	66	12	10	10	68	1.41
30678193--30678283	34	2.8	32	86	5	121	30	2	20	46	1.63
30687340--30687390	10	4.6	11	81	15	61	43	0	3	52	1.19
30687339--30687385	23	2.0	23	100	0	94	44	0	4	51	1.21
30693949--30694083	50	2.7	50	82	0	162	25	17	28	28	1.97
30694992--30695033	15	2.8	15	96	0	75	30	0	40	28	1.57
30694986--30695033	5	9.6	5	83	0	60	31	0	41	27	1.56
30707419--30707476	19	3.0	20	75	12	66	17	36	15	31	1.91
30707419--30707513	39	2.4	39	82	0	109	18	31	15	33	1.93
30712945--30713190	50	4.8	50	81	6	237	28	21	27	22	1.99
30717329--30717384	28	1.9	29	82	13	71	64	1	5	28	1.26
30720693--30720760	28	2.4	28	85	4	93	36	4	10	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30722398--30722434	11	3.5	11	92	3	58	21	29	0	48	1.50
30722398--30722443	22	2.1	22	84	8	58	19	28	2	50	1.60
30727236--30727279	23	1.9	23	85	0	61	40	15	22	20	1.90
30731633--30731673	14	3.0	14	96	3	75	14	0	12	73	1.11
30748659--30748684	10	2.6	10	100	0	52	19	19	11	50	1.77
30760307--30760354	6	7.5	6	77	13	51	79	6	2	12	1.01
30761593--30761647	26	2.1	26	86	3	74	69	1	10	18	1.27
30761701--30761728	3	9.3	3	100	0	56	67	0	0	32	0.91
30769551--30769768	108	2.0	108	100	0	436	38	8	24	29	1.84
30777883--30777950	10	6.7	10	73	15	50	4	11	2	80	0.96
30782353--30782459	53	2.0	53	98	0	205	32	10	11	45	1.73
30791493--30791545	18	2.9	19	81	10	67	39	15	0	45	1.46
30798092--30798192	7	14.4	7	86	4	96	42	0	28	27	1.62
30798138--30798206	14	4.9	15	87	7	74	47	0	23	28	1.52
30798138--30798205	21	3.2	21	85	4	84	48	0	22	29	1.51
30798984--30799032	26	1.9	25	83	4	62	40	46	4	8	1.52
30800666--30800712	6	8.0	6	97	2	87	0	14	0	85	0.61
30802991--30803030	9	4.4	9	90	0	62	37	25	10	27	1.88
30803038--30803098	17	3.4	17	70	12	59	50	14	3	31	1.59
30803029--30803103	37	2.0	37	100	0	150	45	16	5	33	1.69
30803029--30803120	37	2.5	37	91	7	134	46	15	5	32	1.68
30808066--30808191	62	2.0	61	92	1	207	34	19	11	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30810205--30810251	3	15.7	3	95	0	85	31	2	0	65	1.04
30810839--30811376	111	4.9	109	90	4	843	31	17	17	33	1.93
30810839--30811376	220	2.5	221	94	2	944	31	17	17	33	1.93
30811950--30812002	26	2.0	26	100	0	106	18	11	30	39	1.86
30823141--30823933	101	7.9	101	89	1	1153	32	25	20	21	1.97
30826348--30827103	109	6.9	109	89	1	1149	32	16	16	35	1.91
30826349--30827103	221	3.5	220	93	1	1288	32	16	16	34	1.91
30829354--30829477	18	6.6	18	69	12	61	8	6	59	25	1.51
30829300--30829394	30	3.2	30	72	8	77	8	5	57	28	1.50
30829371--30829460	42	2.1	42	85	0	117	8	4	62	24	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228