genome.fa.s23.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  224  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66248757--66248802	20	2.4	19	82	7	56	41	4	4	50	1.42
66252591--66252648	29	2.0	29	100	0	116	27	17	17	37	1.92
66258586--66258634	20	2.3	22	79	13	57	34	0	4	61	1.15
66271232--66271555	177	1.8	179	86	4	474	40	17	17	25	1.91
66271420--66271705	148	1.9	150	91	2	470	42	15	18	24	1.88
66273058--66273652	145	4.1	144	80	5	592	39	22	13	24	1.90
66284810--66284855	4	11.5	4	95	0	56	41	23	8	26	1.83
66287169--66287225	29	1.9	30	85	3	80	35	1	21	42	1.63
66287173--66287304	60	2.2	61	81	8	155	36	3	18	40	1.69
66287732--66287778	22	2.2	21	88	7	69	36	12	25	25	1.92
66299581--66299639	3	19.7	3	96	0	109	0	33	1	64	1.04
66301149--66301503	130	2.8	130	83	3	452	29	14	18	37	1.91
66303117--66303178	27	2.3	26	78	13	72	43	0	3	53	1.17
66304666--66305088	159	2.7	159	85	1	573	24	9	19	47	1.78
66312616--66312655	20	2.0	21	85	5	55	52	2	0	45	1.14
66312603--66312663	26	2.3	26	75	13	63	45	1	0	52	1.10
66328899--66328942	22	2.0	22	100	0	88	22	18	9	50	1.75
66336447--66336525	39	2.0	39	97	0	149	27	10	16	45	1.79
66341541--66341619	39	2.0	39	95	0	140	25	10	16	48	1.77
66347580--66347622	22	2.0	22	85	0	59	13	9	16	60	1.58
66349912--66349949	19	2.0	19	90	10	60	73	0	21	5	1.02
66351132--66351220	38	2.2	40	88	5	128	37	0	7	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66358522--66358684	83	2.0	83	98	0	317	39	22	12	25	1.90
66358931--66359103	60	2.7	62	85	7	215	51	15	16	16	1.77
66368828--66368852	7	3.6	7	100	0	50	52	0	0	48	1.00
66370598--66370643	7	6.3	7	80	9	56	39	0	2	58	1.10
66375877--66375912	18	2.0	18	100	0	72	72	0	5	22	1.05
66376672--66376699	11	2.5	11	100	0	56	32	0	0	67	0.91
66378911--66378987	40	1.9	40	89	0	118	15	7	24	51	1.69
66380575--66380609	17	2.1	17	94	0	61	40	11	0	48	1.39
66387188--66387237	17	2.7	20	78	18	70	10	0	44	46	1.37
66391827--66391876	17	2.7	20	78	18	70	10	0	44	46	1.37
66393460--66393701	121	2.0	121	98	0	466	34	17	23	23	1.96
66394599--66394632	9	3.8	9	92	0	59	41	11	23	23	1.87
66401903--66401941	9	4.3	9	96	0	69	35	20	20	23	1.96
66411074--66411161	45	2.0	45	84	4	115	42	18	15	23	1.89
66411365--66411449	40	2.1	41	86	2	118	41	21	7	30	1.79
66411365--66411432	21	3.3	21	68	15	61	38	20	8	32	1.84
66412255--66412311	30	1.9	29	86	10	80	49	5	0	45	1.24
66412404--66412447	16	2.6	16	79	10	52	47	4	0	47	1.22
66414855--66414879	6	4.2	6	100	0	50	0	16	0	84	0.63
66414846--66414885	16	2.4	16	88	12	55	0	20	0	80	0.72
66414846--66414894	22	2.2	23	88	3	73	4	18	0	77	0.92
66414861--66414894	16	2.1	16	88	0	50	5	14	0	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66414876--66414915	21	1.9	21	84	0	53	7	17	7	67	1.38
66427528--66427552	5	5.0	5	100	0	50	40	0	0	60	0.97
66431535--66431787	125	2.0	125	94	0	443	39	9	30	20	1.85
66433534--66433816	144	2.0	141	95	2	514	28	25	12	33	1.92
66447734--66448252	189	2.7	189	92	0	849	30	20	19	30	1.97
66452073--66452139	9	7.4	9	91	0	98	41	25	8	23	1.83
66452147--66452209	17	3.5	17	69	12	54	49	14	3	33	1.59
66452343--66452459	39	3.0	39	91	1	182	18	2	26	52	1.59
66457790--66457994	42	4.9	42	86	3	270	32	20	21	25	1.97
66457781--66458016	126	1.9	129	85	6	338	33	21	20	25	1.97
66458428--66458500	21	3.5	21	92	0	119	6	41	15	36	1.73
66458428--66458516	21	4.2	21	89	0	79	6	43	14	34	1.72
66458428--66458516	42	2.1	42	85	0	115	6	43	14	34	1.72
66463995--66464482	25	19.3	25	69	17	205	31	1	18	48	1.57
66464218--66464255	12	3.0	13	81	18	53	23	0	18	57	1.40
66464315--66464522	16	12.2	17	72	14	94	30	2	21	46	1.64
66464424--66464522	43	2.3	43	87	0	135	29	2	25	43	1.66
66464422--66464544	34	3.8	31	78	12	113	30	3	23	43	1.70
66464467--66464539	30	2.7	25	79	10	65	30	2	24	42	1.69
66464510--66464534	12	2.1	12	100	0	50	32	0	16	52	1.44
66464002--66464522	9	60.4	9	71	15	277	31	1	19	47	1.58
66464507--66464556	21	2.3	21	83	10	57	36	6	16	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66464537--66464562	12	2.2	12	100	0	52	46	7	7	38	1.61
66464609--66464690	28	2.8	30	83	7	114	51	7	6	35	1.55
66464964--66465005	21	2.0	21	90	0	66	19	11	26	42	1.85
66465680--66465720	15	2.6	16	84	7	57	36	2	43	17	1.62
66465877--66466329	114	3.9	115	79	6	398	41	19	13	26	1.88
66466729--66466804	21	3.5	21	81	12	91	52	23	0	23	1.47
66466703--66466782	36	2.1	38	81	6	92	52	21	1	25	1.54
66466717--66466804	7	12.3	7	76	3	59	52	23	1	22	1.54
66467007--66467061	22	2.5	22	82	8	60	56	20	0	23	1.42
66469365--66469454	9	10.1	9	86	2	119	37	16	21	24	1.93
66477729--66477974	43	5.8	43	80	5	250	30	28	16	24	1.96
66482722--66482823	21	4.9	21	78	7	82	42	36	0	20	1.59
66482722--66482803	42	2.0	42	82	4	103	40	39	1	19	1.60
66482770--66482823	7	7.7	7	82	0	63	48	29	0	22	1.51
66482980--66483006	14	1.9	14	100	0	54	37	48	0	14	1.45
66483029--66483069	15	2.8	15	92	3	66	39	34	0	26	1.57
66483449--66483615	41	4.1	41	80	3	183	28	31	18	21	1.97
66483441--66483595	82	1.9	82	91	0	256	27	31	18	22	1.97
66483672--66483757	39	2.2	39	85	8	113	23	27	19	29	1.98
66505013--66505178	83	2.0	82	92	3	280	30	22	16	30	1.96
66506458--66506508	22	2.3	22	80	12	61	62	11	3	21	1.45
66529213--66529237	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66529401--66529473	9	8.1	9	84	0	92	42	23	8	26	1.82
66529401--66529473	27	2.7	27	91	0	110	42	23	8	26	1.82
66529472--66529546	37	2.0	37	92	0	123	45	16	4	34	1.66
66529481--66529543	17	3.5	17	69	12	54	49	14	3	33	1.59
66529539--66529564	13	2.0	13	100	0	52	38	7	7	46	1.61
66529688--66529796	39	2.8	39	88	1	166	17	2	25	54	1.56
66533761--66534006	42	5.8	43	85	3	306	31	20	22	26	1.98
66539975--66540527	9	63.4	9	69	17	219	32	2	18	46	1.62
66539973--66540090	25	4.7	25	71	19	77	33	1	20	44	1.62
66539941--66540015	32	2.3	34	86	4	100	32	1	17	49	1.55
66540019--66540495	25	18.8	25	70	16	188	31	1	18	47	1.59
66539939--66540271	36	9.4	36	69	16	173	33	0	19	46	1.56
66540258--66540362	29	3.5	30	71	20	103	32	2	13	51	1.55
66540331--66540495	16	9.8	17	68	16	76	30	3	19	46	1.65
66540383--66540461	41	1.9	41	84	0	104	26	3	18	50	1.64
66540483--66540507	12	2.1	12	100	0	50	32	0	16	52	1.44
66540475--66540517	21	2.0	22	90	4	70	32	4	18	44	1.71
66540610--66540642	15	2.2	15	100	0	66	54	6	0	39	1.25
66540564--66540661	43	2.2	44	87	5	135	50	7	3	39	1.45
66540534--66540672	61	2.3	59	85	10	176	50	7	3	38	1.47
66540646--66540717	17	3.9	18	74	22	60	54	5	2	37	1.39
66540657--66540716	20	3.0	21	73	24	58	53	5	3	38	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66541607--66541631	8	3.1	8	100	0	50	16	0	48	36	1.46
66541627--66541673	24	1.9	25	86	4	69	38	0	44	17	1.48
66541644--66541683	15	2.7	15	84	0	53	37	2	45	15	1.59
66541627--66541706	39	2.1	39	87	0	115	35	1	47	16	1.55
66541707--66541733	14	1.9	14	100	0	54	55	0	22	22	1.44
66541854--66542305	114	3.9	114	80	5	455	40	20	13	25	1.89
66541854--66542306	229	2.0	230	80	5	513	40	20	13	24	1.89
66542708--66542753	22	2.1	22	84	8	58	56	15	0	28	1.39
66542757--66542802	17	2.9	16	78	9	51	43	41	0	15	1.46
66542757--66542802	8	5.9	8	82	7	51	43	41	0	15	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228