genome.fa.s23.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  132  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39400962--39401013	25	2.1	25	82	7	61	30	28	7	32	1.85
39401189--39401371	40	4.6	40	79	6	185	24	26	22	26	2.00
39401677--39401755	29	2.7	29	86	5	106	27	32	15	24	1.95
39401743--39401810	28	2.4	28	97	0	127	30	32	13	23	1.93
39401771--39401867	43	2.3	43	100	0	194	27	34	14	23	1.94
39403876--39404159	47	6.1	45	90	3	370	28	31	9	30	1.89
39403928--39404159	47	4.9	47	96	0	428	30	30	8	31	1.87
39403876--39404159	94	3.0	94	90	1	428	28	31	9	30	1.89
39412803--39412880	28	2.8	28	80	3	86	34	12	8	43	1.74
39416342--39416369	11	2.5	11	100	0	56	64	7	7	21	1.43
39427680--39427834	28	5.5	28	88	0	229	32	27	20	20	1.97
39427951--39428057	26	4.1	26	88	0	151	37	22	20	19	1.94
39428203--39428910	108	6.6	107	77	7	560	19	18	19	42	1.89
39428204--39428910	27	26.3	27	77	6	503	19	18	19	42	1.89
39447962--39448146	40	4.6	39	82	6	203	24	22	27	25	2.00
39447962--39448146	79	2.3	81	83	7	227	24	22	27	25	2.00
39447992--39448169	79	2.2	78	79	9	200	26	20	26	25	1.99
39452255--39452303	20	2.5	20	75	0	53	30	14	30	24	1.94
39453167--39453238	33	2.2	33	89	0	108	27	15	25	31	1.95
39454144--39454189	18	2.8	17	87	9	60	8	17	4	69	1.31
39455207--39455253	17	2.7	18	77	6	53	14	14	4	65	1.41
39476455--39476516	28	2.2	28	85	0	79	41	11	14	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39482135--39482316	50	3.7	50	83	5	203	28	22	26	22	1.99
39482521--39482569	20	2.5	20	81	15	66	57	6	24	12	1.58
39483743--39483804	28	2.2	28	85	0	79	41	9	16	32	1.80
39495184--39495238	19	2.8	20	75	5	58	34	16	21	27	1.95
39496358--39496451	46	2.0	46	93	4	163	35	22	18	24	1.96
39499275--39499309	17	2.0	17	88	5	52	14	11	0	74	1.08
39501823--39501910	46	1.9	46	90	9	144	36	20	18	25	1.95
39504699--39504757	27	2.1	27	81	9	66	11	23	1	62	1.38
39505687--39505715	15	1.9	15	100	0	58	24	13	0	62	1.32
39505755--39505783	13	2.3	13	94	5	51	24	6	0	68	1.13
39506101--39506194	46	2.0	46	95	4	172	34	22	19	24	1.97
39519154--39519220	2	33.5	2	96	0	125	0	1	49	49	1.10
39534921--39535003	40	2.1	40	100	0	166	32	12	19	36	1.88
39536687--39536731	20	2.2	21	96	4	83	22	8	22	46	1.79
39540962--39541017	28	2.0	28	85	0	76	26	23	23	26	2.00
39541355--39541417	26	2.4	26	91	2	81	19	20	19	41	1.91
39541355--39541628	27	10.2	27	83	4	270	20	18	17	43	1.89
39541355--39541628	81	3.4	81	83	5	324	20	18	17	43	1.89
39542206--39542278	34	2.1	35	84	2	94	50	10	28	9	1.69
39544306--39544360	20	2.8	20	85	0	74	25	27	16	30	1.96
39547325--39547351	5	5.4	5	100	0	54	18	0	0	81	0.69
39557515--39557692	28	6.4	28	88	2	225	32	28	12	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39565701--39565878	28	6.4	28	88	2	225	32	28	14	25	1.94
39571375--39571418	22	1.9	24	81	9	56	29	13	13	43	1.83
39589483--39589585	25	4.1	25	85	5	118	31	18	23	27	1.97
39589514--39589586	25	2.9	25	95	0	128	32	17	23	26	1.97
39594301--39594352	23	2.3	22	75	21	54	11	21	1	65	1.34
39594346--39594384	18	2.2	18	90	0	60	12	20	2	64	1.40
39619448--39619617	40	4.3	40	84	1	198	23	21	30	25	1.99
39619470--39619652	79	2.3	80	80	1	199	25	20	29	24	1.99
39622773--39623199	47	9.1	47	95	0	683	28	30	8	32	1.88
39645856--39645882	14	1.9	14	100	0	54	33	22	14	29	1.94
39649243--39649289	24	1.9	24	86	4	67	8	21	0	70	1.14
39652478--39652504	14	1.9	14	100	0	54	33	22	14	29	1.94
39659181--39659235	15	3.8	15	85	2	69	1	21	1	74	1.01
39661427--39661596	40	4.3	40	85	0	207	24	30	21	23	1.99
39664362--39664393	10	3.2	10	100	0	64	0	9	0	90	0.45
39670691--39670749	21	2.8	21	74	20	61	10	22	0	67	1.20
39671359--39671393	18	1.9	18	88	0	52	54	20	5	20	1.64
39671808--39671841	14	2.5	13	90	9	59	11	2	5	79	1.02
39675434--39675470	17	2.1	18	90	5	58	48	10	0	40	1.38
39682854--39682977	29	4.3	29	75	4	115	25	24	12	38	1.89
39683052--39683081	12	2.5	12	100	0	60	50	6	6	36	1.55
39687796--39687853	25	2.3	25	87	0	80	24	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39688889--39688938	26	1.9	26	84	8	66	30	8	32	30	1.86
39689414--39689451	7	5.4	7	90	0	58	47	18	0	34	1.49
39694044--39694083	20	2.0	20	85	0	53	22	20	10	47	1.79
39698722--39698760	20	2.0	20	89	0	60	23	20	12	43	1.86
39698704--39698773	20	3.5	20	80	0	59	25	24	11	38	1.89
39707349--39707413	20	3.3	19	73	16	51	38	16	21	23	1.93
39714157--39714217	10	6.1	10	74	12	54	32	13	24	29	1.93
39714158--39714218	20	3.0	20	83	9	79	32	13	26	27	1.93
39720222--39720269	20	2.4	20	67	0	51	33	18	27	20	1.96
39723199--39723249	21	2.4	22	83	6	61	7	21	1	68	1.25
39726094--39726265	40	4.3	40	85	2	204	25	26	21	26	1.99
39726094--39726318	80	2.8	79	78	7	222	25	26	21	26	1.99
39726250--39726327	40	1.9	41	82	10	97	26	28	20	24	1.99
39733324--39733495	40	4.3	40	87	2	213	25	27	21	25	1.99
39733324--39733548	80	2.8	79	80	7	231	25	27	21	25	1.99
39733480--39733557	40	1.9	41	82	10	97	26	28	20	24	1.99
39736958--39737022	20	3.3	19	71	16	60	38	10	26	24	1.88
39744896--39744944	20	2.6	18	81	12	62	12	8	6	73	1.24
39751058--39751101	18	2.4	18	88	11	63	72	0	20	6	1.07
39752778--39752857	33	2.4	34	87	6	121	36	3	13	46	1.62
39757029--39757082	20	2.7	20	73	2	54	48	11	5	35	1.62
39757138--39757183	22	2.1	22	88	4	67	45	10	0	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39757224--39757264	20	2.0	20	85	0	55	41	17	21	19	1.90
39760921--39760973	23	2.4	22	76	20	56	9	18	1	69	1.25
39767785--39767837	21	2.5	21	90	3	79	30	1	33	33	1.69
39767796--39767828	11	3.1	11	82	8	50	33	0	36	30	1.58
39767785--39767847	21	3.0	21	86	6	65	33	1	31	33	1.68
39773052--39773083	16	2.0	16	93	0	55	25	15	0	59	1.36
39775227--39775291	20	3.3	19	73	16	51	38	16	21	23	1.93
39776558--39776591	18	1.9	18	88	5	52	8	35	2	52	1.47
39776674--39776705	15	2.1	16	94	5	57	6	21	0	71	1.07
39777672--39777746	13	5.5	13	80	13	80	13	6	4	76	1.13
39779216--39779280	20	3.3	19	73	16	51	38	16	21	23	1.93
39781241--39781297	26	2.2	26	81	6	62	21	8	10	59	1.57
39781256--39781305	26	1.9	27	84	8	68	20	10	14	56	1.66
39788627--39788665	10	3.7	11	86	10	55	30	25	12	30	1.93
39788627--39788665	21	1.9	20	89	5	60	30	25	12	30	1.93
39788627--39788671	20	2.2	20	84	7	56	28	26	15	28	1.96
39796191--39796253	21	3.0	21	88	2	81	33	31	4	30	1.78
39797901--39798025	54	2.3	54	85	6	164	30	12	15	42	1.83
39804694--39804738	21	2.1	21	87	0	63	26	26	11	35	1.90
39805182--39805225	20	2.2	20	83	0	52	25	25	13	36	1.92
39806588--39806683	20	4.9	20	75	8	90	23	33	15	27	1.95
39806588--39806654	10	6.8	10	73	10	57	23	32	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39806589--39806683	39	2.4	39	83	10	113	24	33	15	26	1.95
39809114--39809176	33	1.9	33	84	12	85	12	26	6	53	1.62
39809173--39809229	14	4.2	13	77	20	62	10	17	0	71	1.12
39809173--39809230	27	2.1	27	87	12	84	10	18	0	70	1.15
39809191--39809329	18	7.7	18	71	11	88	7	20	2	69	1.27
39809191--39809298	6	17.7	6	70	5	74	6	18	3	71	1.23
39809176--39809330	81	1.9	83	81	6	190	9	20	2	68	1.29
39810331--39810391	28	2.2	28	85	11	81	4	14	4	75	1.14
39812725--39812774	11	4.7	11	82	9	68	78	6	2	14	1.03
39812727--39812772	20	2.3	20	92	0	74	76	6	2	15	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228