genome.fa.s23.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  177  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52906823--52906871	13	3.8	13	81	10	55	83	2	10	4	0.85
52909102--52909141	16	2.5	16	91	0	62	47	2	7	42	1.45
52909130--52909275	66	2.1	72	86	11	205	41	5	8	45	1.57
52909211--52909249	16	2.4	16	91	0	60	35	0	7	56	1.28
52909280--52909324	18	2.5	18	96	0	81	28	6	6	57	1.50
52909293--52909332	18	2.4	17	87	8	55	42	7	5	45	1.54
52909444--52909509	19	3.4	19	89	4	96	66	7	6	19	1.38
52909444--52909528	39	2.2	38	85	8	109	67	8	4	20	1.36
52909490--52909612	61	2.0	61	100	0	246	59	8	6	26	1.50
52909688--52909728	13	3.2	13	83	10	50	70	12	0	17	1.16
52909614--52909717	50	2.1	50	87	5	149	53	9	14	22	1.69
52909741--52909773	16	2.1	16	100	0	66	69	12	0	18	1.18
52914685--52914731	9	5.6	9	75	14	55	17	0	4	78	0.90
52915443--52915495	21	2.5	21	90	0	88	18	7	41	32	1.79
52926742--52926888	12	12.0	12	73	4	78	16	0	53	30	1.43
52926760--52926870	27	4.3	27	72	13	108	19	0	50	29	1.48
52926742--52926839	48	2.0	48	98	0	187	17	0	51	31	1.46
52926832--52926900	15	4.6	15	71	7	50	17	0	57	24	1.39
52926878--52926924	24	2.0	24	86	0	67	23	2	51	23	1.59
52939840--52939874	8	4.4	8	88	0	52	60	0	0	40	0.97
52944252--52944277	6	4.3	6	100	0	52	0	84	0	15	0.62
52946776--52946919	44	3.3	44	83	8	170	23	17	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52947669--52947710	21	2.0	21	86	13	61	42	11	9	35	1.74
52948992--52949020	15	1.9	15	100	0	58	34	24	6	34	1.82
52949873--52949914	19	2.2	19	83	12	50	54	9	9	26	1.63
52954323--52954352	14	2.1	14	100	0	60	46	20	6	26	1.75
52956922--52956971	21	2.6	19	80	20	59	60	0	4	36	1.16
52956938--52956981	11	4.1	11	85	5	63	61	0	2	36	1.09
52957556--52957614	11	5.5	11	80	8	59	33	1	0	64	1.04
52957546--52957615	21	3.3	21	78	13	81	34	1	1	62	1.13
52957538--52957600	10	6.2	10	85	9	83	34	0	1	63	1.04
52958682--52958714	17	2.0	17	88	5	50	51	9	9	30	1.64
52967697--52967887	36	5.0	36	83	14	240	37	13	19	28	1.90
52967661--52967851	82	2.3	82	94	3	348	38	12	20	28	1.89
52967807--52967872	21	3.5	20	63	25	52	34	12	19	33	1.89
52975093--52975326	36	5.6	45	75	19	247	35	14	21	28	1.92
52975093--52975326	82	2.9	82	93	1	393	35	14	21	28	1.92
52978796--52978821	13	2.0	13	100	0	52	30	7	15	46	1.74
52978855--52978894	19	2.0	20	85	4	55	25	20	7	47	1.75
52980742--52980781	19	2.1	19	90	9	64	15	12	5	67	1.38
52981720--52981767	7	6.7	7	77	13	53	66	2	14	16	1.34
52981720--52981781	15	4.3	15	76	17	51	66	1	16	16	1.34
52981719--52981775	21	2.6	21	83	8	69	66	1	15	15	1.33
52982967--52983716	132	5.7	132	90	0	1106	29	18	23	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52983287--52983622	44	7.6	44	67	11	159	29	17	23	29	1.97
52983551--52983647	44	2.2	44	81	0	113	27	18	23	29	1.98
52983708--52983849	44	3.2	44	85	1	185	30	13	27	28	1.94
52983867--52984012	44	3.4	44	72	9	147	29	21	25	23	1.99
52983854--52984012	85	1.9	85	88	2	239	28	22	23	25	1.99
52987655--52987703	21	2.3	21	100	0	98	42	14	14	28	1.84
52989683--52989707	2	12.5	2	100	0	50	48	0	0	52	1.00
52996640--52996711	29	2.4	29	81	4	81	26	9	12	51	1.70
52999740--52999815	36	2.1	36	92	0	125	46	1	2	50	1.24
53002605--53002634	7	4.1	7	95	4	51	3	13	0	83	0.77
53009804--53009832	6	4.8	6	100	0	58	82	0	0	17	0.66
53013320--53013993	105	6.4	105	81	1	724	33	13	18	34	1.89
53022403--53022759	44	7.7	44	66	18	159	27	21	19	31	1.97
53022265--53022759	142	3.5	142	92	1	807	27	21	19	31	1.97
53041971--53042009	20	2.0	20	94	0	69	15	35	17	30	1.91
53043316--53043409	25	3.8	25	73	16	86	28	22	20	28	1.98
53051515--53051596	20	4.2	18	79	15	65	18	31	12	37	1.87
53064504--53064581	29	2.7	29	82	2	95	41	19	12	26	1.87
53064509--53064686	28	6.2	28	76	7	144	37	17	15	28	1.91
53064534--53064694	57	2.8	56	76	5	162	35	19	15	29	1.93
53070199--53070282	24	3.4	25	73	14	68	17	30	20	30	1.96
53085797--53085826	4	7.5	4	100	0	60	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53090110--53090162	24	2.2	24	82	0	61	50	9	5	33	1.58
53093549--53093590	17	2.3	18	80	12	50	33	0	9	57	1.31
53102883--53102922	18	2.2	18	95	0	71	42	5	7	45	1.54
53103412--53103448	16	2.3	16	100	0	74	37	10	18	32	1.86
53105578--53105609	16	2.0	16	100	0	64	0	6	31	62	1.20
53106292--53106324	16	2.1	16	94	0	57	21	21	21	36	1.95
53113106--53113131	7	3.7	7	100	0	52	46	0	0	53	1.00
53113381--53113460	23	3.7	21	67	21	58	53	1	6	38	1.34
53113370--53113460	42	2.2	41	81	11	107	51	1	6	40	1.35
53114109--53114143	16	2.1	17	89	5	54	51	0	0	48	1.00
53116924--53117034	47	2.4	47	90	0	159	21	23	20	34	1.97
53122532--53122670	42	3.3	41	84	2	143	20	23	37	18	1.94
53123691--53123738	25	1.9	25	82	0	60	4	20	16	58	1.55
53124521--53124578	22	2.7	21	86	5	80	39	1	5	53	1.33
53124663--53124711	3	16.3	3	100	0	98	67	0	0	32	0.91
53127161--53127216	4	14.0	4	100	0	112	50	25	0	25	1.50
53128447--53128489	15	2.8	15	75	3	50	55	0	11	32	1.36
53131703--53131755	20	2.7	18	80	16	52	39	1	13	45	1.54
53132665--53132701	14	2.9	13	85	14	51	72	0	27	0	0.84
53132665--53132701	13	2.9	14	88	11	53	72	0	27	0	0.84
53138136--53138186	25	2.0	25	100	0	102	31	23	7	37	1.83
53150123--53150185	30	2.1	30	90	0	99	57	15	3	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53150916--53150967	24	2.2	24	85	0	68	50	7	3	38	1.50
53155084--53155135	24	2.2	24	85	0	68	51	9	3	34	1.53
53159834--53159879	7	6.4	7	87	12	67	2	56	0	41	1.11
53160119--53160149	2	15.5	2	100	0	62	51	0	48	0	1.00
53170583--53170622	20	2.0	20	85	5	53	12	15	20	52	1.74
53170612--53170673	30	2.1	30	93	0	106	30	12	16	40	1.86
53171220--53171257	18	2.1	18	95	0	67	55	2	13	28	1.51
53172167--53172236	34	2.1	34	100	0	140	51	11	17	20	1.75
53183103--53183223	29	4.2	29	92	2	190	21	23	27	27	1.99
53186711--53186753	11	3.9	11	82	8	52	76	2	20	0	0.89
53186850--53186902	15	3.5	15	82	5	54	71	3	1	22	1.12
53186850--53186891	18	2.3	18	91	0	66	73	2	2	21	1.06
53186860--53186902	12	3.6	12	81	12	52	72	2	2	23	1.08
53190644--53190794	75	2.0	75	97	2	286	27	13	23	35	1.92
53191416--53191462	23	2.0	24	83	4	60	21	21	19	38	1.94
53195104--53195159	27	2.1	27	93	0	94	35	14	19	30	1.91
53195357--53195412	27	2.1	27	89	0	85	33	14	21	30	1.93
53195017--53195525	253	2.0	252	95	0	910	35	13	18	32	1.90
53197216--53197258	20	2.2	20	87	4	61	58	9	6	25	1.54
53202668--53202701	12	2.8	12	90	4	50	41	0	0	58	0.98
53209990--53210029	18	2.2	18	100	0	80	22	15	5	57	1.57
53211239--53211278	20	2.0	20	90	9	64	27	0	12	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53219242--53219268	7	3.9	7	100	0	54	29	14	0	55	1.40
53220576--53220617	21	2.0	21	85	4	57	69	4	0	26	1.08
53226142--53226167	3	8.7	3	100	0	52	30	34	34	0	1.58
53228991--53229026	2	18.0	2	100	0	72	50	0	50	0	1.00
53241046--53241109	28	2.3	28	97	0	119	40	6	0	53	1.26
53241116--53241147	16	1.9	17	93	6	57	68	18	6	6	1.32
53241770--53241841	23	3.2	23	64	25	62	41	13	0	44	1.44
53241755--53241843	45	2.0	45	97	0	169	40	14	0	44	1.45
53241849--53241898	15	3.1	15	85	8	64	42	0	14	44	1.44
53241867--53241904	18	2.1	18	90	0	58	47	0	13	39	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228