genome.fa.s23.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  46  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13933128--13933620	132	3.7	132	88	1	713	27	22	19	31	1.98
13933416--13933597	44	4.1	45	69	9	124	28	21	21	28	1.99
13933133--13933620	263	1.9	263	88	1	755	27	22	19	30	1.98
13933521--13933701	96	1.9	95	88	3	274	29	24	17	28	1.97
13933732--13933846	44	2.6	46	78	12	139	24	22	24	28	1.99
13934220--13934356	42	3.2	43	64	17	111	22	19	26	31	1.98
13933798--13934747	87	10.9	87	90	0	1407	24	22	23	30	1.99
13935192--13935387	108	1.8	108	89	0	311	47	10	16	25	1.79
13935353--13935453	45	2.3	43	78	10	103	53	7	11	26	1.65
13935723--13935782	13	5.0	12	76	15	54	1	16	1	80	0.89
13935724--13935782	19	3.4	17	78	19	59	1	16	1	79	0.89
13935720--13935766	7	7.0	7	80	9	53	2	19	0	78	0.85
13936217--13936268	15	3.5	15	86	5	70	3	3	5	86	0.78
13936231--13936278	20	2.4	20	80	16	55	2	2	10	85	0.77
13936230--13936280	11	4.7	11	90	7	70	1	1	11	84	0.79
13936216--13936279	14	4.6	13	78	18	58	3	3	9	84	0.84
13947393--13947465	9	7.7	9	80	10	65	36	1	4	57	1.26
13947393--13947476	9	8.6	10	78	15	61	35	2	3	58	1.28
13947393--13947476	19	4.3	19	78	7	80	35	2	3	58	1.28
13947515--13947590	10	8.1	10	73	16	56	31	2	1	64	1.15
13950276--13950404	45	2.9	45	84	1	179	33	20	22	23	1.97
13951835--13951865	15	2.0	16	93	6	55	83	0	12	3	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13956059--13956083	12	2.1	12	100	0	50	52	24	8	16	1.70
13956928--13956967	20	1.9	22	85	10	57	52	7	17	22	1.69
13960974--13961028	12	4.8	12	75	8	60	0	25	0	74	0.82
13960987--13961028	22	1.9	22	85	9	59	0	26	0	73	0.83
13968464--13968528	33	2.1	33	91	8	109	56	0	1	41	1.08
13968822--13968872	16	3.2	16	91	0	84	27	27	3	41	1.73
13972912--13973026	45	2.6	45	81	4	144	28	24	14	32	1.95
13972902--13973680	143	5.4	143	87	1	1013	28	21	18	31	1.97
13973508--13973609	44	2.3	45	79	1	125	31	21	20	26	1.98
13973836--13973936	37	2.6	39	85	10	143	64	0	1	32	1.11
13973836--13973936	39	2.6	38	87	9	141	64	0	1	32	1.11
13974115--13974538	143	3.0	143	91	0	670	27	23	19	29	1.98
13975421--13975458	20	2.0	20	89	5	60	0	13	5	81	0.85
13978035--13978074	19	2.1	19	86	9	55	42	12	22	22	1.87
13983608--13983651	19	2.2	20	88	4	63	56	0	2	40	1.11
13983993--13984093	45	2.2	45	87	0	139	50	2	4	41	1.39
13984045--13984115	32	2.2	32	87	7	99	53	2	2	40	1.30
13984438--13984468	16	1.9	16	93	0	53	70	0	0	29	0.87
13992604--13992683	25	3.2	25	87	0	115	25	28	15	31	1.95
13992604--13992701	50	2.0	50	85	0	133	27	27	15	29	1.96
13996707--13996884	40	4.4	39	76	9	151	23	17	28	30	1.97
14002938--14002998	25	2.4	25	76	10	63	40	3	0	55	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14008986--14009037	27	2.0	27	85	11	72	36	1	1	59	1.19
14027461--14027494	13	2.6	13	82	17	52	8	23	5	61	1.47
14029535--14029582	18	2.7	18	78	9	62	41	2	16	39	1.60
14030842--14030886	20	2.2	20	100	0	90	40	0	8	51	1.33
14033271--14033337	34	2.0	33	82	8	82	31	8	23	35	1.86
14033536--14033689	6	25.7	6	86	5	115	20	10	14	53	1.70
14033554--14033695	6	23.7	6	87	0	122	20	9	15	54	1.68
14033542--14033689	18	8.2	18	81	8	160	20	10	15	54	1.70
14033968--14034104	62	2.2	61	94	1	238	22	9	21	46	1.79
14035910--14036211	95	3.2	95	93	0	496	28	7	18	45	1.77
14036035--14036099	26	2.6	25	92	2	103	29	9	13	47	1.74
14035940--14036021	26	3.1	25	85	7	92	29	8	15	46	1.76
14036893--14036952	18	3.2	18	71	13	57	38	36	13	11	1.81
14036942--14036993	21	2.5	22	84	9	72	34	44	5	15	1.70
14036960--14037001	21	2.0	21	90	0	66	35	42	9	11	1.74
14037405--14037450	24	2.0	24	86	4	67	47	4	21	26	1.69
14037687--14037765	36	2.2	36	97	0	149	48	22	8	20	1.77
14037703--14037768	20	3.5	20	68	29	63	53	22	6	18	1.66
14037703--14037789	36	2.4	36	88	3	122	54	20	5	19	1.65
14038592--14038628	6	6.2	6	100	0	74	16	67	16	0	1.23
14044944--14045023	39	2.1	39	92	0	133	41	7	27	23	1.81
14046451--14046494	20	2.1	21	83	4	54	38	6	2	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14046451--14046494	21	2.2	20	84	12	54	38	6	2	52	1.41
14049081--14049159	23	3.5	23	78	1	88	22	18	20	37	1.94
14049113--14049178	22	2.9	22	82	8	62	19	18	18	43	1.88
14053541--14053577	9	4.1	9	85	0	56	29	13	13	43	1.82
14054220--14054346	27	4.7	26	69	23	77	42	2	18	36	1.64
14054228--14054399	13	13.2	13	67	20	83	44	1	18	35	1.60
14054216--14054373	40	4.1	40	91	5	238	42	2	19	35	1.65
14054928--14055028	49	2.0	50	94	1	177	36	12	20	29	1.90
14055368--14055442	25	2.9	25	78	4	78	69	2	26	1	1.10
14056095--14056140	24	1.9	24	83	16	60	32	0	17	50	1.47
14056297--14056431	40	3.5	40	76	14	140	25	17	24	33	1.96
14056575--14056614	20	2.0	20	90	9	64	37	10	20	32	1.85
14057100--14057127	13	2.2	13	100	0	56	35	0	14	50	1.43
14061427--14061830	218	1.9	216	83	2	531	32	13	13	41	1.82
14062408--14062484	37	2.1	37	85	4	102	20	28	6	44	1.76
14062421--14062509	37	2.4	38	81	5	101	24	28	4	42	1.74
14064606--14064859	37	6.9	37	71	4	172	21	34	3	40	1.72
14068521--14068715	37	5.3	37	70	8	137	21	33	5	40	1.75
14068520--14068737	73	3.0	73	78	4	240	21	33	5	39	1.75
14071311--14071473	37	4.4	36	82	6	152	20	32	4	42	1.73
14071311--14071486	74	2.4	74	81	8	191	19	32	4	43	1.72
14072540--14072812	37	7.4	37	77	4	201	18	39	4	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14072541--14072810	111	2.4	110	79	6	260	18	38	4	38	1.70
14073651--14073866	74	2.9	72	81	2	225	19	34	5	40	1.74
14073649--14074034	37	10.4	37	75	3	195	18	36	4	40	1.72
14073835--14074034	111	1.8	111	80	6	244	17	37	4	40	1.70
14080722--14080770	20	2.5	19	77	6	53	16	14	6	63	1.49
14082701--14082740	21	1.9	21	85	10	55	42	2	0	55	1.13
14083542--14083594	27	2.0	27	85	14	74	41	0	3	54	1.18
14083542--14083600	27	2.1	27	82	14	68	44	0	3	52	1.17
14084844--14085272	100	4.2	101	82	10	534	28	0	15	55	1.45
14084860--14085235	202	1.9	203	90	1	612	29	0	15	53	1.46
14085249--14085284	15	2.3	16	95	4	65	30	0	5	63	1.17
14087320--14087434	33	3.5	33	82	1	122	15	43	13	27	1.84
14087629--14087859	77	3.1	76	87	5	308	28	6	10	54	1.60
14091481--14091536	21	2.8	19	84	10	85	33	10	19	35	1.87
14091485--14091543	21	3.0	21	80	14	81	33	10	20	35	1.86
14091985--14092010	10	2.6	10	100	0	52	15	0	0	84	0.62
14092484--14092532	4	12.5	4	79	12	57	22	0	4	73	1.00
14092484--14092532	22	2.3	21	82	10	55	22	0	4	73	1.00
14092539--14092580	19	2.2	20	82	4	50	30	7	11	50	1.66
14092889--14092943	27	2.0	27	82	0	65	36	7	7	49	1.58
14093543--14093609	32	2.1	32	88	5	100	38	10	8	41	1.71
14097292--14097378	31	2.9	30	74	14	81	42	12	10	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14097342--14097410	31	2.4	28	79	13	77	37	11	11	39	1.78
14107228--14107254	3	9.0	3	100	0	54	33	0	0	66	0.92
14109513--14109542	16	1.9	16	93	6	53	50	20	0	30	1.49
14110661--14110816	25	6.4	24	80	13	142	32	19	23	24	1.98
14110645--14110796	49	3.1	49	86	10	179	30	19	24	25	1.98
14110677--14110816	73	1.9	74	89	4	221	32	19	25	23	1.98
14110661--14110816	49	3.2	48	84	8	174	32	19	23	24	1.98
14131770--14131826	25	2.1	28	87	9	84	47	1	5	45	1.35
14131783--14131834	25	2.1	25	78	3	61	53	0	3	42	1.19
14139100--14139214	59	1.9	59	96	0	212	32	21	6	39	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228