genome.fa.s23.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  164  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49174379--49174415	19	1.9	19	94	0	65	62	0	0	37	0.96
49176895--49176955	23	2.5	24	82	15	72	32	14	26	26	1.95
49180555--49180646	34	2.7	34	80	6	105	31	5	16	46	1.69
49181569--49181602	17	1.9	17	88	5	50	47	0	0	52	1.00
49186042--49186172	39	3.4	39	86	0	190	29	16	34	19	1.94
49189603--49189649	4	12.0	4	78	13	53	74	0	2	23	0.93
49189603--49189652	18	2.6	19	81	18	59	74	0	2	24	0.93
49189784--49189830	18	2.6	17	78	15	51	59	2	4	34	1.29
49189968--49190013	3	15.3	3	78	17	51	67	0	0	32	0.91
49190721--49191073	127	2.8	127	89	0	528	28	20	20	30	1.98
49190801--49190990	44	4.4	44	73	14	180	27	21	19	31	1.97
49190968--49191162	83	2.3	83	94	0	336	29	22	20	27	1.99
49203397--49203443	18	2.6	17	78	15	51	59	2	4	34	1.29
49207623--49207657	14	2.5	14	90	0	52	14	5	8	71	1.29
49209283--49209359	31	2.5	30	83	8	84	38	3	3	53	1.38
49228769--49229044	139	2.0	138	80	5	306	39	12	11	36	1.79
49235434--49235473	3	13.3	3	94	0	71	65	0	2	32	1.06
49237506--49237551	12	3.8	12	97	2	83	26	17	15	41	1.88
49241638--49241691	28	1.9	28	88	0	81	29	33	0	37	1.58
49241824--49241880	16	3.6	16	76	9	53	36	0	3	59	1.14
49263701--49263828	28	4.6	28	87	1	168	25	11	28	33	1.91
49263734--49263841	28	3.9	27	90	3	110	28	11	25	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49271924--49272046	55	2.2	56	88	2	176	26	12	28	33	1.92
49271924--49272046	28	4.4	28	90	2	176	26	12	28	33	1.92
49271949--49272059	28	4.0	27	90	3	116	28	11	26	33	1.91
49277116--49277179	30	2.1	29	83	8	83	50	3	1	45	1.27
49281585--49281656	28	2.5	29	88	4	110	34	23	4	37	1.74
49281870--49281944	29	2.6	29	91	0	114	12	18	26	42	1.85
49282338--49282371	14	2.4	14	90	0	50	38	8	20	32	1.84
49282430--49282467	18	2.1	18	95	0	67	47	7	10	34	1.67
49282544--49282604	19	3.2	20	77	17	67	55	3	1	39	1.26
49284955--49284995	15	2.5	17	81	18	52	43	4	17	34	1.70
49286108--49286200	30	3.2	30	84	3	118	30	15	20	34	1.93
49288985--49289037	27	2.0	26	85	7	72	43	11	1	43	1.51
49290008--49290041	15	2.3	15	95	5	61	76	5	17	0	0.98
49297073--49297115	17	2.5	17	84	0	50	16	37	27	18	1.92
49309030--49309100	36	1.9	38	83	11	94	30	5	1	61	1.27
49309066--49309099	17	2.1	16	88	5	50	29	2	0	67	1.05
49309243--49309466	87	2.5	88	82	7	265	34	8	18	37	1.82
49310246--49310310	9	7.1	9	73	22	55	3	23	1	72	1.07
49310258--49310311	16	3.2	16	80	12	56	3	25	0	70	1.04
49312368--49312489	23	5.3	23	90	3	192	29	26	20	23	1.99
49312368--49312489	46	2.7	46	96	0	217	29	26	20	23	1.99
49313814--49313901	42	2.1	42	89	0	131	26	22	34	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49322608--49322660	25	2.1	25	89	0	79	32	11	15	41	1.82
49331282--49331354	38	1.9	38	83	5	94	32	1	9	56	1.40
49332406--49332430	12	2.1	12	100	0	50	40	0	8	52	1.31
49336203--49336278	20	3.9	20	68	10	59	46	3	1	48	1.29
49336266--49336310	17	2.6	17	82	3	54	33	2	2	62	1.20
49340566--49340616	25	2.0	25	96	0	93	50	3	37	7	1.50
49341314--49341394	3	27.0	3	83	0	90	32	6	2	59	1.35
49341325--49341388	24	2.7	24	90	0	101	34	7	1	56	1.38
49347745--49347783	19	2.1	19	85	0	51	43	0	28	28	1.55
49348068--49348098	9	3.4	9	90	0	53	38	22	12	25	1.90
49350461--49350508	15	3.0	16	77	16	55	56	2	4	37	1.30
49351348--49351381	16	2.1	16	88	0	50	41	2	20	35	1.68
49353895--49354019	20	6.2	20	82	3	144	8	30	20	40	1.83
49353898--49354016	40	3.0	40	87	4	168	8	31	20	40	1.82
49366559--49367213	44	14.7	44	79	4	616	28	23	15	33	1.95
49366559--49367117	89	6.3	89	86	2	723	28	22	15	33	1.94
49366559--49367204	178	3.6	176	84	3	735	28	22	15	33	1.95
49366559--49367231	89	7.6	88	85	3	553	28	22	15	32	1.95
49375274--49375313	20	2.0	20	85	0	53	32	10	22	35	1.87
49382094--49382167	39	1.9	40	83	8	100	50	1	6	41	1.37
49389700--49389779	37	2.1	38	88	2	126	52	6	22	18	1.68
49391084--49391132	25	2.0	25	88	8	73	46	26	10	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49405145--49405182	20	1.9	20	88	0	58	28	28	26	15	1.96
49409928--49409998	26	2.5	28	80	15	83	54	5	2	36	1.38
49410589--49410787	87	2.3	87	87	4	283	37	22	9	30	1.86
49410815--49410863	19	2.6	19	78	12	57	63	0	2	34	1.06
49410862--49410897	17	2.1	17	94	0	63	52	5	0	41	1.24
49410892--49410948	29	1.9	30	85	3	80	59	3	0	36	1.14
49411090--49411178	47	1.9	46	86	6	126	29	6	3	60	1.38
49411145--49411188	19	2.3	19	84	11	54	20	6	2	70	1.21
49412230--49412278	22	2.2	22	85	3	62	14	6	2	77	1.05
49412874--49412915	19	2.2	19	83	8	50	23	2	7	66	1.28
49415497--49415523	2	13.5	2	100	0	54	51	0	0	48	1.00
49429520--49429555	17	2.1	18	89	5	56	50	5	0	44	1.25
49433108--49433145	11	3.5	11	100	0	76	28	7	15	47	1.74
49432670--49433563	451	2.0	451	93	0	1529	30	10	15	43	1.80
49439274--49439675	123	3.3	123	96	1	734	29	16	21	32	1.95
49442404--49442468	32	2.0	32	100	0	130	46	9	21	23	1.80
49442897--49443479	29	20.9	29	86	11	799	28	0	24	46	1.53
49442897--49443479	52	10.5	53	80	12	583	28	0	24	46	1.53
49443155--49443208	22	2.5	20	96	3	63	25	0	25	48	1.52
49443376--49443430	23	2.4	22	87	9	67	23	0	25	50	1.49
49445880--49445929	22	2.3	22	93	6	84	36	0	34	30	1.58
49457300--49457569	28	9.7	28	77	10	232	25	22	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49457323--49457569	56	4.4	56	80	9	272	25	21	12	40	1.89
49457305--49457569	84	3.2	83	81	8	290	25	21	12	39	1.89
49460811--49460848	18	2.1	19	90	5	60	21	10	28	39	1.86
49465706--49465746	15	2.7	15	85	10	57	41	4	0	53	1.22
49465706--49465750	16	2.9	16	87	9	58	42	6	0	51	1.28
49466002--49466165	44	3.8	43	75	9	138	29	28	16	25	1.97
49466185--49466221	18	2.0	19	89	5	58	37	0	0	62	0.96
49467193--49467223	16	1.9	16	100	0	62	38	12	12	35	1.82
49468207--49468247	20	2.0	22	90	9	68	36	0	4	58	1.20
49470297--49470375	41	1.9	41	89	0	122	27	26	20	25	1.99
49474295--49474377	41	2.0	41	95	0	148	32	20	22	24	1.98
49477246--49478097	426	2.0	426	100	0	1704	28	10	22	37	1.88
49496686--49496733	23	2.1	23	84	0	60	39	20	10	29	1.86
49499353--49499383	15	2.1	15	93	0	53	19	29	12	38	1.89
49522936--49522977	19	2.3	18	92	8	75	26	0	4	69	1.08
49525588--49525648	24	2.7	23	80	14	65	32	0	42	24	1.55
49526213--49526533	27	11.9	27	86	2	394	39	21	19	19	1.93
49534339--49534462	66	1.9	66	89	3	196	22	20	20	36	1.95
49534546--49534606	11	5.5	11	78	0	68	21	34	1	42	1.63
49534724--49534769	11	4.2	11	88	0	56	21	32	0	45	1.52
49534560--49534877	164	1.9	164	90	3	507	25	16	6	51	1.68
49542377--49542544	40	4.2	40	83	6	200	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49542358--49542544	80	2.4	79	82	8	218	26	21	25	26	1.99
49544434--49544472	18	2.0	20	90	9	64	46	5	0	48	1.24
49550239--49550271	12	3.0	11	87	12	50	45	18	0	36	1.49
49553081--49553121	21	2.0	21	90	0	64	19	29	21	29	1.98
49558227--49558284	29	2.0	30	82	3	73	44	1	5	48	1.35
49561224--49561257	3	11.7	3	93	6	61	67	0	0	32	0.91
49565748--49565788	18	2.3	19	80	16	52	29	2	2	65	1.18
49567314--49567365	8	6.2	8	82	12	61	34	0	3	61	1.14
49569241--49569325	39	2.2	39	93	0	143	15	17	34	32	1.91
49571332--49571423	25	3.7	24	77	8	78	17	26	20	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228