genome.fa.s23.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  51  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15408823--15408909	44	2.0	45	90	2	140	49	12	0	37	1.41
15410164--15410237	22	3.4	22	87	9	98	44	0	31	24	1.54
15417243--15417273	15	2.1	15	93	0	53	58	3	25	12	1.50
15418587--15418675	28	3.2	28	81	0	115	48	23	20	7	1.75
15422178--15422220	17	2.7	15	76	16	50	48	25	0	25	1.51
15422186--15422227	17	2.4	18	84	11	52	54	16	0	28	1.42
15424756--15424870	33	3.5	33	77	10	103	39	5	2	53	1.37
15425740--15425776	17	2.2	17	90	4	58	51	29	5	13	1.63
15427859--15427918	26	2.3	27	97	2	113	41	11	0	46	1.40
15428340--15428405	19	3.5	19	80	12	91	37	9	1	51	1.43
15428630--15428688	19	3.2	19	82	4	84	49	0	13	37	1.43
15437936--15438312	50	7.6	50	69	7	228	30	21	24	23	1.99
15437931--15438320	100	3.9	100	90	1	559	30	21	23	24	1.99
15438330--15438773	44	9.9	44	72	9	315	32	18	22	26	1.97
15438501--15438649	52	3.1	49	70	17	150	31	16	25	26	1.97
15438464--15438649	96	1.9	96	98	0	363	33	16	23	26	1.96
15438332--15438781	228	2.0	228	95	0	819	32	18	23	26	1.97
15438555--15438813	132	2.0	132	95	0	464	32	18	22	26	1.97
15442029--15442105	27	2.9	27	92	0	118	18	29	24	27	1.98
15442162--15442227	28	2.4	28	97	0	123	48	0	10	40	1.38
15442616--15442655	19	2.0	20	95	4	73	22	0	5	72	1.04
15442622--15442666	19	2.4	20	78	14	51	26	0	2	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15449022--15449109	38	2.3	38	96	0	158	37	18	10	34	1.84
15449086--15449127	22	1.9	22	100	0	84	38	14	7	40	1.73
15451491--15451590	39	2.6	39	87	1	139	39	5	8	48	1.55
15456327--15456356	16	1.9	15	93	6	51	46	6	0	46	1.29
15467755--15467810	26	2.2	26	83	6	69	46	5	16	32	1.69
15482879--15482904	12	2.2	12	100	0	52	42	26	0	30	1.56
15488624--15488913	42	6.9	42	85	1	195	28	21	20	29	1.98
15488713--15488955	42	5.8	41	86	7	285	23	22	21	32	1.98
15488626--15488956	84	4.0	82	83	4	356	27	20	20	30	1.98
15488710--15488945	126	1.9	125	93	2	411	25	22	20	31	1.98
15490080--15490280	87	2.3	87	83	0	249	26	20	16	35	1.94
15491747--15491796	16	3.1	15	81	18	57	66	4	0	30	1.10
15491758--15491802	22	1.9	24	86	13	67	66	2	0	31	1.04
15492619--15492647	14	2.1	14	100	0	58	24	0	34	41	1.55
15498965--15499014	26	2.0	24	84	7	64	28	12	0	60	1.32
15500913--15500949	8	4.8	8	93	6	67	27	13	0	59	1.35
15500904--15500949	23	2.0	22	91	4	74	26	13	0	60	1.32
15500913--15500949	15	2.4	15	95	4	65	27	13	0	59	1.35
15500997--15501033	14	2.5	15	84	16	51	62	2	0	35	1.10
15512797--15513552	89	8.5	89	91	2	1128	25	23	18	32	1.97
15533265--15533292	5	5.6	5	100	0	56	0	17	0	82	0.68
15535933--15536110	42	4.2	42	82	0	185	42	17	23	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15536195--15536242	24	2.0	24	91	0	78	22	25	8	43	1.81
15539696--15539736	17	2.4	18	80	8	50	24	19	21	34	1.97
15539733--15539767	18	1.9	18	88	0	52	22	11	22	42	1.85
15544771--15544839	29	2.3	30	80	9	79	60	7	17	14	1.55
15547843--15547971	65	2.0	65	98	0	249	33	10	17	37	1.85
15551237--15551284	15	3.0	16	85	14	64	16	4	2	77	1.03
15563091--15563153	30	2.1	30	96	0	117	23	3	15	57	1.53
15563632--15563679	25	2.0	22	84	11	60	45	2	0	52	1.12
15566782--15566906	46	2.7	46	81	2	153	28	23	15	32	1.95
15566782--15566920	46	3.0	46	78	6	147	29	23	15	30	1.96
15567817--15567841	13	1.9	13	100	0	50	28	24	16	32	1.96
15568571--15568803	115	2.0	115	88	0	349	33	16	18	31	1.93
15572860--15572898	20	2.0	20	84	0	51	71	0	7	20	1.10
15573111--15573153	19	2.2	19	83	8	50	41	4	0	53	1.21
15573163--15573245	41	2.0	41	90	0	130	33	1	15	49	1.53
15574495--15574531	16	2.2	17	86	13	51	54	0	5	40	1.24
15574473--15574755	91	3.0	93	84	7	308	48	3	3	44	1.37
15574514--15574755	47	5.3	46	69	17	148	47	3	3	45	1.37
15574573--15574633	28	2.2	28	85	5	81	50	3	0	45	1.17
15574573--15574715	44	3.2	43	70	20	130	48	2	2	46	1.28
15577848--15577923	40	1.9	40	100	0	152	36	6	14	42	1.72
15578210--15578253	21	2.1	21	91	0	70	29	34	2	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15580395--15580424	15	2.0	15	93	0	51	36	0	0	63	0.95
15583965--15584007	24	1.9	23	81	13	54	37	13	2	46	1.57
15585375--15585407	15	2.2	15	89	10	50	72	9	0	18	1.10
15589366--15589437	23	3.2	23	64	18	60	44	11	23	20	1.84
15589369--15589528	45	3.6	45	83	0	203	45	13	21	20	1.85
15604900--15605006	40	2.7	39	80	8	117	22	25	27	25	2.00
15605732--15605999	97	2.8	97	91	1	441	39	17	2	40	1.62
15612346--15612376	16	1.9	16	93	0	53	54	3	6	35	1.42
15612505--15612566	27	2.3	27	83	2	72	45	0	3	51	1.17
15612528--15612565	19	2.1	19	90	5	60	36	0	5	57	1.21
15612534--15612577	19	2.2	21	84	11	58	38	0	4	56	1.20
15614511--15614724	69	3.1	67	75	10	207	33	5	4	57	1.42
15614511--15614712	45	4.4	45	80	7	185	33	5	3	56	1.40
15614510--15614724	24	9.3	25	73	17	155	33	5	4	56	1.42
15614567--15614779	114	1.9	114	82	9	274	35	7	3	53	1.44
15614534--15614801	24	11.6	23	72	16	162	34	5	4	55	1.45
15618597--15618659	13	3.7	18	70	25	57	46	0	1	52	1.10
15618892--15618916	13	1.9	13	100	0	50	32	20	0	48	1.50
15629583--15629676	42	2.2	42	92	0	152	25	21	27	25	1.99
15629596--15629683	42	2.1	42	95	0	158	23	22	23	29	1.99
15633142--15633176	9	3.8	9	88	7	52	40	14	0	45	1.45
15635943--15635978	18	2.0	18	89	10	56	16	0	30	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15640893--15640943	16	3.2	16	78	10	59	17	31	1	49	1.58
15642852--15642940	21	4.1	21	81	5	90	51	10	25	12	1.70
15647954--15648037	26	3.2	26	81	3	98	35	21	19	23	1.96
15650656--15651183	271	2.0	269	87	5	762	36	22	9	31	1.87
15656582--15656613	6	5.5	6	96	3	57	34	0	65	0	0.93
15658042--15658183	28	4.9	28	78	12	117	39	0	14	45	1.51
15658074--15658141	33	2.1	33	88	0	100	41	1	11	45	1.50
15658509--15658572	25	2.6	25	85	5	85	53	1	20	25	1.55
15661564--15661755	61	3.2	59	86	8	230	52	9	4	33	1.53
15662107--15662142	18	2.0	18	94	0	63	41	5	27	25	1.77
15663910--15663973	11	5.7	11	73	14	51	46	1	20	31	1.60
15668499--15668668	43	4.0	42	73	8	128	32	27	17	22	1.96
15668499--15668668	85	2.0	84	82	10	202	32	27	17	22	1.96
15674960--15675019	28	2.1	28	84	6	77	16	20	25	38	1.93
15685406--15685468	32	2.0	32	90	9	103	58	0	0	41	0.98
15686731--15686793	23	2.8	23	77	13	69	42	4	4	47	1.45
15687042--15687168	64	2.0	64	89	1	193	29	8	11	49	1.69
15687531--15687585	26	2.1	26	93	0	92	32	7	20	40	1.80
15697035--15697109	19	4.3	17	74	21	59	60	2	1	36	1.20
15699174--15699207	12	2.8	12	90	4	50	70	11	0	17	1.16
15699642--15699693	24	2.2	24	89	0	77	55	9	1	32	1.43
15702633--15702877	67	3.7	67	89	2	323	37	17	24	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15702615--15702905	67	4.3	67	86	2	318	36	17	24	22	1.94
15706592--15706680	24	3.8	25	81	11	107	29	23	13	33	1.93
15709748--15709781	14	2.4	14	100	0	68	41	5	23	29	1.78
15709846--15710087	44	5.5	45	84	4	298	24	15	23	36	1.93
15709846--15710078	88	2.6	88	88	0	331	24	15	23	36	1.94
15709846--15710087	132	1.8	132	86	3	353	24	15	23	36	1.93
15728236--15728618	189	2.0	189	89	2	590	24	20	8	46	1.77
15734865--15734914	18	2.8	18	84	3	75	52	0	2	46	1.12
15737018--15737468	227	2.0	227	98	0	875	35	7	16	40	1.77
15737138--15737873	373	2.0	373	99	0	1454	36	9	15	38	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228