genome.fa.s23.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  199  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58391696--58391858	43	3.8	43	88	0	218	21	21	29	27	1.99
58400304--58400366	33	1.9	32	90	3	99	39	25	9	25	1.86
58400580--58400735	41	3.8	41	97	0	285	26	22	21	29	1.99
58407950--58408013	33	2.0	32	90	3	101	39	25	9	26	1.86
58408232--58408387	41	3.8	41	97	0	285	26	22	21	29	1.99
58411740--58411784	18	2.4	19	85	14	58	33	6	2	57	1.37
58416898--58416923	7	3.7	7	100	0	52	15	0	38	46	1.46
58419011--58419055	23	2.0	23	82	8	56	51	0	6	42	1.28
58419224--58419272	3	16.3	3	83	8	64	61	2	0	36	1.08
58419848--58419881	11	3.0	11	91	4	50	79	0	0	20	0.73
58419848--58419905	22	2.5	24	78	15	61	75	0	6	17	1.01
58427872--58427994	57	2.1	59	81	3	142	32	12	8	47	1.70
58428441--58428478	19	2.0	19	89	0	58	31	0	0	68	0.90
58430519--58430580	11	5.9	10	75	16	54	58	1	0	40	1.08
58439925--58439969	22	2.0	22	95	0	81	20	6	8	64	1.44
58452646--58452707	31	2.0	31	100	0	124	32	9	16	41	1.80
58453770--58453805	18	2.0	18	88	0	54	30	2	8	58	1.42
58453829--58453884	20	3.2	16	79	18	51	53	1	1	42	1.21
58453845--58453883	20	2.0	20	94	0	69	48	0	2	48	1.15
58457676--58457735	3	20.0	3	78	0	66	30	35	1	33	1.68
58462001--58462026	13	2.0	13	100	0	52	0	0	23	76	0.78
58467985--58468209	40	5.7	40	86	5	278	25	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58467987--58468209	119	1.9	120	84	6	301	25	27	22	24	2.00
58469248--58469281	10	3.4	10	91	0	50	0	17	0	82	0.67
58469354--58469536	56	3.1	56	88	10	294	24	22	9	43	1.82
58469390--58469514	63	2.0	63	98	0	241	26	21	9	42	1.83
58474344--58474416	23	3.2	23	92	0	128	23	21	24	30	1.99
58481585--58481621	8	4.6	8	100	0	74	24	13	27	35	1.93
58481708--58481780	23	3.2	23	92	0	128	23	21	24	30	1.99
58483529--58483562	16	2.1	16	88	0	50	23	2	29	44	1.68
58503283--58503311	3	9.7	3	100	0	58	31	0	0	68	0.89
58505314--58505357	15	2.9	15	83	6	54	40	0	0	59	0.98
58507255--58507300	4	11.5	4	86	9	67	73	0	4	21	1.00
58507254--58507299	24	2.0	23	95	4	83	73	0	4	21	1.00
58513458--58513502	22	2.0	22	91	0	72	48	15	2	33	1.57
58518058--58518102	22	2.0	22	91	0	72	48	15	2	33	1.57
58520152--58520194	21	2.0	21	100	0	86	27	18	30	23	1.98
58520943--58521001	29	2.0	30	83	6	75	45	0	33	20	1.51
58521215--58521251	9	4.1	9	86	13	58	32	10	10	45	1.74
58531544--58531580	2	18.5	2	100	0	74	0	48	0	51	1.00
58534444--58534473	3	10.0	3	92	0	51	33	3	33	30	1.74
58543814--58543865	24	2.2	24	89	0	77	55	9	1	32	1.43
58545784--58545835	24	2.2	24	89	0	77	55	9	1	32	1.43
58547050--58547101	25	2.0	26	81	3	61	63	13	5	17	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58547626--58547682	3	19.0	3	100	0	114	33	0	0	66	0.92
58551703--58551794	40	2.2	42	90	3	152	38	1	9	51	1.42
58552580--58552612	16	2.1	16	94	0	57	33	9	36	21	1.85
58552781--58552822	15	2.7	16	82	14	52	52	2	0	45	1.13
58552790--58552831	15	2.9	15	82	10	52	52	0	0	47	1.00
58552900--58552951	15	3.6	15	80	12	56	53	1	0	44	1.11
58553017--58553062	16	2.9	16	78	12	51	52	2	0	45	1.13
58553017--58553071	15	3.7	15	79	13	53	52	1	0	45	1.11
58553137--58553182	16	2.9	16	78	12	51	52	2	0	45	1.13
58553137--58553191	15	3.7	15	79	13	53	52	1	0	45	1.11
58552779--58553316	120	4.5	120	97	0	997	49	5	2	42	1.38
58560109--58560160	21	2.4	21	83	3	59	59	3	9	26	1.46
58562945--58562974	14	2.1	15	93	6	53	46	0	0	53	1.00
58566885--58567031	9	15.2	9	69	17	57	27	6	2	63	1.31
58566888--58567010	20	5.8	20	67	22	72	27	4	3	64	1.30
58566888--58566931	19	2.3	20	88	7	65	25	4	2	68	1.20
58566890--58567009	29	4.1	28	70	16	84	27	5	3	64	1.30
58566885--58567019	28	4.7	29	67	23	70	27	5	2	64	1.29
58568902--58568941	5	8.0	5	97	0	71	57	2	0	40	1.12
58573318--58573447	67	2.0	66	93	1	224	28	34	17	19	1.95
58576343--58576387	5	9.0	5	97	0	81	57	2	0	40	1.11
58578065--58578114	18	2.8	19	73	11	52	26	2	2	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58578210--58578247	13	2.8	14	88	8	60	13	0	2	84	0.73
58585601--58585664	25	2.7	24	74	13	69	21	1	10	65	1.32
58587164--58587215	3	17.3	3	100	0	104	67	0	0	32	0.91
58594515--58594580	32	2.1	32	100	0	132	42	15	25	16	1.87
58594781--58594830	15	3.4	15	71	15	50	26	8	28	38	1.84
58596807--58596844	20	1.9	20	100	0	76	42	10	15	31	1.81
58596854--58597174	108	3.0	105	83	8	398	33	16	12	37	1.86
58599139--58599171	14	2.4	14	94	0	57	21	0	9	69	1.15
58603107--58603142	3	12.0	3	100	0	72	33	66	0	0	0.92
58604675--58604813	60	2.3	61	85	5	183	38	5	12	42	1.67
58629456--58629612	44	3.6	44	94	0	260	30	14	21	33	1.93
58629614--58629712	47	2.1	48	83	5	121	21	14	29	35	1.92
58639999--58640111	61	1.9	58	85	5	154	41	3	5	49	1.42
58639999--58640133	58	2.3	60	83	8	161	42	3	5	48	1.45
58644210--58644260	26	2.0	26	96	0	93	52	3	19	23	1.62
58644529--58644574	22	2.1	23	84	15	62	43	0	4	52	1.21
58655591--58655692	40	2.6	39	90	7	156	49	5	2	42	1.42
58662855--58662898	20	2.2	20	87	0	61	29	4	34	31	1.78
58670948--58671011	32	2.0	32	100	0	128	15	25	21	37	1.93
58679088--58679303	109	2.0	109	99	0	423	31	18	16	34	1.93
58683496--58683542	23	2.0	24	83	4	60	44	4	27	23	1.72
58689768--58689799	15	2.1	16	94	5	57	6	21	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58697234--58697288	28	2.0	28	88	0	83	14	16	9	60	1.59
58698966--58698999	14	2.4	14	95	0	59	14	5	41	38	1.70
58700875--58700911	6	5.8	6	90	9	56	83	0	2	13	0.74
58700873--58700914	7	6.3	7	88	5	61	80	0	2	16	0.81
58700875--58700914	13	3.1	13	86	13	64	82	0	2	15	0.77
58701852--58701899	20	2.4	20	79	6	53	27	35	8	29	1.86
58703316--58703350	3	11.7	3	93	0	61	68	2	0	28	1.04
58703538--58703566	3	9.7	3	100	0	58	34	31	0	34	1.58
58703565--58703608	23	1.9	23	86	9	63	61	0	4	34	1.16
58704974--58705146	91	1.9	91	83	3	226	25	20	25	28	1.99
58705292--58707054	87	20.2	86	91	2	2357	24	23	23	28	1.99
58705902--58706130	44	5.2	44	61	14	123	24	24	22	28	1.99
58708281--58708326	24	1.9	24	86	0	65	8	8	4	78	1.09
58710430--58710459	15	2.0	15	93	0	51	36	13	26	23	1.92
58712370--58712410	3	13.7	3	100	0	82	68	0	0	31	0.90
58712638--58712687	24	2.0	24	84	7	64	64	6	18	12	1.47
58713293--58713331	15	2.6	15	79	0	51	82	5	5	7	0.96
58715046--58715082	6	5.8	6	90	9	56	83	0	2	13	0.74
58715044--58715085	7	6.3	7	88	5	61	80	0	2	16	0.81
58715046--58715085	13	3.1	13	86	13	64	82	0	2	15	0.77
58716645--58716694	13	4.0	12	80	14	57	34	4	8	54	1.49
58716637--58716691	26	2.2	25	87	9	76	32	3	10	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58718696--58718754	27	2.1	28	81	3	66	44	10	1	44	1.48
58720810--58720834	13	1.9	13	100	0	50	24	8	0	68	1.16
58722644--58722690	19	2.5	19	86	6	60	25	19	10	44	1.82
58725545--58725633	6	14.7	6	72	15	67	76	0	20	3	0.93
58725545--58725633	17	5.2	16	82	10	74	76	0	20	3	0.93
58725572--58725633	18	3.5	18	84	8	83	77	0	19	3	0.90
58726957--58727832	89	9.8	89	86	0	1115	29	24	22	23	1.99
58727826--58728151	44	7.5	42	67	17	146	30	16	24	28	1.96
58727826--58728309	132	3.7	132	91	1	747	30	15	24	29	1.96
58728434--58728620	88	2.1	87	90	2	286	32	19	21	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228