genome.fa.s23.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  155  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46648184--46648330	58	2.5	59	83	5	201	36	19	31	11	1.88
46648322--46648399	20	3.9	20	71	14	54	30	17	28	23	1.97
46653195--46653240	20	2.3	21	82	14	62	30	4	2	63	1.26
46664849--46665232	44	8.7	43	70	14	192	29	17	22	29	1.97
46664593--46665061	129	3.5	128	75	11	396	31	15	22	30	1.95
46664849--46665232	87	4.3	87	75	12	291	29	17	22	29	1.97
46664848--46665192	131	2.6	132	79	9	328	29	17	23	29	1.97
46665117--46665232	42	2.7	42	84	9	137	28	18	24	29	1.98
46669159--46669352	41	4.8	41	86	0	255	21	20	23	35	1.96
46669656--46669700	21	2.2	21	80	15	58	24	0	35	40	1.56
46669889--46670001	49	2.3	49	85	10	151	24	0	37	38	1.56
46669965--46670003	15	2.7	14	88	11	53	25	0	35	38	1.56
46669889--46670023	49	2.8	48	80	4	128	22	1	37	37	1.64
46671770--46671804	12	2.9	12	91	0	52	20	5	31	42	1.75
46687578--46687750	40	4.4	40	76	8	167	24	22	26	26	2.00
46695744--46695926	79	2.3	81	84	7	232	24	22	27	25	2.00
46695745--46695928	40	4.6	40	83	9	216	23	22	28	25	2.00
46695797--46695961	79	2.1	79	84	6	210	25	21	27	25	1.99
46701493--46701562	18	3.9	18	87	7	90	64	1	1	32	1.11
46701514--46701562	3	16.3	3	91	8	82	67	0	0	32	0.91
46702554--46702621	16	4.2	16	96	0	118	27	0	36	35	1.58
46702602--46702696	45	2.1	44	88	1	136	34	5	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46702858--46702892	18	2.0	17	94	5	61	51	0	0	48	1.00
46702995--46703161	47	3.6	46	71	12	146	47	4	2	45	1.35
46703054--46703125	28	2.6	28	84	8	85	51	4	0	44	1.20
46703293--46703337	22	2.0	22	100	0	90	42	13	0	44	1.43
46719040--46719361	156	2.1	157	95	1	574	35	8	19	36	1.83
46720117--46720307	55	3.5	53	82	8	168	32	16	20	29	1.95
46720184--46720274	29	3.2	29	73	14	100	34	17	17	30	1.93
46723263--46723313	25	2.0	26	84	3	68	45	9	3	41	1.56
46723419--46723476	17	3.6	17	77	11	68	56	1	1	39	1.19
46729443--46729488	21	2.1	21	84	8	56	56	0	6	36	1.25
46729434--46729494	32	1.9	32	86	6	88	59	0	4	36	1.19
46734570--46734594	5	5.0	5	100	0	50	80	0	0	20	0.72
46735375--46736097	44	16.7	44	69	14	364	24	20	22	32	1.98
46735358--46736009	129	5.1	130	87	1	884	25	19	22	32	1.98
46735463--46735833	85	4.3	85	70	11	270	25	19	22	32	1.97
46735358--46736094	129	5.7	127	83	4	814	24	20	22	32	1.98
46736303--46736459	44	3.6	44	84	5	194	28	26	17	28	1.98
46744025--46744068	22	2.0	22	87	12	65	18	11	40	29	1.85
46758917--46758955	20	1.9	21	89	5	62	43	0	17	38	1.50
46762805--46762996	49	3.9	49	72	9	131	28	13	31	26	1.94
46764146--46764174	14	2.0	15	93	6	51	13	3	0	82	0.79
46764965--46765018	26	2.1	26	82	0	63	31	3	3	61	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46771267--46771620	44	7.5	44	65	14	161	30	21	22	25	1.99
46771241--46772579	143	9.4	143	87	0	1802	30	20	21	27	1.98
46772544--46772658	44	2.6	44	81	8	135	31	23	17	27	1.97
46773416--46773474	30	1.9	31	86	3	84	47	3	20	28	1.66
46776493--46776522	14	2.2	14	94	5	53	36	6	3	53	1.44
46778386--46778448	24	2.7	23	85	5	72	28	0	3	68	1.05
46784690--46784765	26	2.9	26	69	11	66	38	5	0	56	1.22
46786860--46786896	17	2.2	17	90	9	58	56	8	0	35	1.29
46786979--46787023	18	2.3	20	75	17	51	62	8	8	20	1.51
46787077--46787110	3	11.7	3	87	6	52	64	0	2	32	1.08
46788626--46789054	44	9.5	44	75	7	299	30	19	16	33	1.94
46789829--46789892	28	2.3	27	86	2	92	64	0	0	35	0.94
46791980--46792032	23	2.3	23	86	3	79	30	7	3	58	1.43
46796050--46796111	30	2.1	30	100	0	124	30	12	3	53	1.55
46796821--46796861	7	5.9	7	86	11	57	90	9	0	0	0.46
46796819--46796861	10	4.3	10	88	8	61	90	9	0	0	0.45
46796819--46796861	11	4.1	11	88	8	63	90	9	0	0	0.45
46796819--46796861	17	2.5	17	92	3	68	90	9	0	0	0.45
46796818--46796883	9	7.6	9	73	19	50	84	6	3	6	0.84
46796819--46796861	1	43.0	1	80	0	50	90	9	0	0	0.45
46798479--46798586	44	2.5	42	83	7	139	27	22	21	28	1.99
46798777--46799318	132	4.1	132	91	1	820	28	18	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46798843--46799165	44	7.4	44	63	13	119	29	18	23	28	1.98
46800720--46800767	22	2.1	23	88	3	71	29	8	4	58	1.46
46801940--46802339	199	2.0	199	97	0	755	38	12	10	39	1.77
46807135--46807318	40	4.6	40	82	6	196	23	20	27	28	1.99
46807135--46807315	80	2.3	81	83	9	221	23	20	27	27	1.99
46807136--46807355	40	5.6	38	78	10	165	24	20	27	27	1.99
46810128--46810411	141	2.0	141	94	1	498	33	21	13	30	1.92
46816119--46816186	27	2.6	25	82	8	91	23	26	14	35	1.94
46822190--46822377	41	4.6	41	90	0	286	28	21	27	22	1.99
46829162--46829390	41	5.6	41	92	0	359	28	20	28	22	1.99
46830556--46830609	17	3.2	16	75	19	56	25	3	11	59	1.48
46833864--46833906	18	2.4	19	85	14	65	62	0	9	27	1.25
46833867--46833905	17	2.3	17	91	8	62	61	0	10	28	1.28
46839543--46839607	29	2.2	29	86	10	89	58	3	1	36	1.23
46838230--46839857	669	2.4	663	79	10	1714	37	10	10	41	1.75
46843870--46843975	53	2.0	53	84	0	140	35	14	13	36	1.85
46845040--46845092	18	2.8	19	75	16	56	13	9	3	73	1.21
46849809--46849868	30	2.0	31	96	3	113	45	6	21	26	1.77
46854442--46854505	30	2.1	31	94	2	112	40	4	26	28	1.76
46854440--46854490	15	3.3	16	72	10	61	43	5	25	25	1.77
46860014--46860086	18	3.9	19	76	21	75	36	8	0	54	1.30
46860035--46860080	18	2.5	19	89	3	76	36	6	0	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46860214--46860270	30	1.9	29	89	3	87	31	14	3	50	1.59
46864043--46864129	12	7.5	11	82	10	77	80	0	19	0	0.71
46864043--46864128	26	3.5	24	78	10	84	80	0	19	0	0.72
46864043--46864128	16	5.3	16	81	13	88	80	0	19	0	0.72
46864068--46864130	7	9.0	7	77	20	53	80	0	19	0	0.70
46864043--46864129	28	3.1	27	77	19	90	80	0	19	0	0.71
46865444--46866216	50	15.5	50	67	10	319	33	24	20	22	1.97
46865436--46866656	100	12.3	100	85	1	1264	33	22	20	23	1.97
46866409--46866707	49	6.1	48	69	8	210	34	22	19	24	1.97
46866485--46866777	145	2.0	148	82	6	362	33	23	19	23	1.97
46865741--46866764	199	5.2	194	78	7	464	33	22	20	23	1.97
46866977--46867159	85	2.2	84	97	1	348	34	16	20	28	1.94
46867728--46867754	13	2.1	13	100	0	54	25	44	7	22	1.79
46868905--46868951	18	2.5	19	89	3	78	36	6	0	57	1.24
46869087--46869143	30	1.9	30	85	3	80	29	14	3	52	1.58
46872170--46872196	4	6.8	4	100	0	54	77	0	22	0	0.76
46873810--46875038	100	12.4	100	87	1	1540	31	23	21	23	1.98
46873819--46875140	50	26.6	50	67	8	563	31	23	22	22	1.98
46876385--46876436	26	2.0	26	84	0	68	61	3	0	34	1.14
46877192--46877245	18	2.7	19	86	13	74	37	7	0	55	1.28
46877189--46877239	18	2.7	19	87	6	77	37	5	0	56	1.23
46877365--46877421	30	1.9	30	89	3	89	31	14	3	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46883913--46884003	36	2.5	37	85	5	114	37	20	16	25	1.93
46885734--46885931	98	2.0	98	93	0	333	43	15	17	23	1.86
46891465--46891506	22	2.0	21	95	4	75	35	14	19	30	1.91
46894225--46894298	27	2.8	27	80	10	89	28	16	8	47	1.75
46896470--46896526	27	2.1	27	100	0	114	36	3	14	45	1.61
46897704--46897830	42	3.0	42	81	5	150	19	22	16	40	1.90
46897774--46897835	21	3.0	21	80	0	79	16	25	17	40	1.90
46897683--46897816	63	2.1	62	79	1	142	19	23	16	40	1.91
46914884--46914925	22	1.9	22	90	0	66	38	9	14	38	1.78
46915118--46915162	23	2.0	22	83	12	56	40	11	2	46	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228