genome.fa.s23.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  169  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50794778--50794894	27	4.3	28	81	9	136	40	22	17	20	1.92
50795054--50795113	26	2.3	26	85	2	75	15	20	23	41	1.89
50795067--50795142	26	2.9	26	82	3	91	15	18	23	42	1.89
50801092--50801264	27	6.4	27	83	3	183	39	20	20	19	1.93
50801092--50801264	81	2.2	80	82	9	210	39	20	20	19	1.93
50801199--50801273	26	2.8	26	84	6	98	42	20	16	21	1.89
50801413--50801514	26	3.9	26	84	2	107	16	22	24	36	1.94
50802141--50802179	17	2.3	17	90	0	69	43	15	15	25	1.86
50824349--50824533	99	1.9	99	84	4	248	30	9	22	37	1.86
50826629--50826667	18	2.2	18	85	0	51	7	2	10	79	1.02
50826635--50826671	17	2.1	18	90	5	58	5	0	13	81	0.86
50827868--50827931	26	2.5	26	97	2	121	18	3	14	64	1.42
50827887--50827934	12	3.8	12	73	10	51	16	2	12	68	1.29
50831408--50831495	39	2.2	40	95	2	160	23	21	28	26	1.99
50839230--50839451	40	5.6	40	85	6	267	26	22	26	25	2.00
50839230--50839451	79	2.8	80	84	7	276	26	22	26	25	2.00
50839230--50839485	79	3.2	80	81	9	199	27	21	26	24	2.00
50854129--50854158	10	3.0	10	90	0	51	53	0	0	46	1.00
50854844--50854905	26	2.4	26	97	0	115	43	9	0	46	1.36
50855697--50855861	82	2.0	82	95	0	294	38	6	9	45	1.63
50855936--50856001	19	3.5	19	79	4	89	50	1	10	37	1.47
50856411--50856501	27	3.4	27	96	3	166	48	1	8	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50858877--50858917	22	1.9	21	85	14	57	48	17	4	29	1.67
50863654--50863686	14	2.3	15	89	5	50	78	6	3	12	1.04
50863648--50863690	15	2.9	15	82	10	52	79	6	2	11	1.02
50865335--50865387	27	1.9	28	84	3	72	11	18	22	47	1.81
50867174--50867263	42	2.1	42	85	0	126	18	27	31	22	1.97
50870221--50870290	19	3.5	19	75	13	52	72	0	8	18	1.09
50871306--50871574	136	2.0	135	89	2	414	30	7	23	39	1.81
50880898--50880937	19	2.0	20	85	4	55	25	0	5	70	1.08
50881434--50881473	20	2.0	20	90	0	62	47	2	7	42	1.45
50882033--50882088	28	2.0	28	96	0	103	53	5	10	30	1.58
50882762--50882826	11	5.8	12	81	15	77	24	32	1	41	1.64
50884653--50884692	18	2.2	18	86	0	53	17	30	7	45	1.76
50885235--50886110	22	40.0	22	82	4	981	44	29	0	25	1.58
50885235--50886110	43	20.0	44	83	4	981	44	29	0	25	1.58
50885235--50886110	65	13.4	65	81	6	946	44	29	0	25	1.58
50885522--50885603	27	3.2	27	80	16	120	42	35	0	21	1.53
50885543--50885622	21	3.2	26	74	20	89	42	35	0	22	1.54
50892185--50892299	59	1.9	59	92	0	194	18	22	20	39	1.93
50893277--50893314	19	2.0	19	94	0	67	55	0	21	23	1.44
50896993--50897059	33	2.0	33	91	0	107	37	31	14	16	1.89
50898309--50898346	19	2.0	19	94	0	67	55	0	21	23	1.44
50908550--50908588	2	19.5	2	89	10	62	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50910387--50910811	44	10.0	43	68	15	206	24	20	22	32	1.98
50910388--50910758	87	4.4	85	69	16	255	24	21	21	32	1.98
50910301--50910811	127	4.0	127	89	1	704	24	21	22	31	1.98
50910602--50910798	40	4.8	40	75	10	180	25	20	23	30	1.98
50912115--50912160	13	3.5	13	88	5	74	15	17	0	67	1.24
50912115--50912168	27	2.0	27	92	0	90	12	16	1	68	1.29
50912117--50912168	7	7.6	7	89	4	79	11	15	1	71	1.23
50912448--50912555	45	2.4	45	96	0	198	19	29	17	33	1.95
50912588--50912644	30	1.9	30	85	7	80	14	8	10	66	1.44
50922338--50922723	194	2.0	194	92	0	646	35	22	7	35	1.82
50924684--50924748	2	32.5	2	96	0	121	1	0	47	50	1.10
50935460--50935526	31	2.2	31	88	0	98	47	7	13	31	1.70
50939871--50940096	85	2.6	85	83	6	258	24	19	29	26	1.99
50939871--50940096	43	5.3	43	83	2	240	24	19	29	26	1.99
50947758--50947825	34	2.0	34	82	5	84	20	25	23	30	1.98
50956103--50956133	13	2.5	12	94	5	53	41	0	0	58	0.98
50956156--50956194	19	2.0	20	90	10	62	48	0	0	51	1.00
50956254--50956304	20	2.7	19	81	6	59	50	0	1	47	1.12
50956260--50956308	19	2.4	21	80	13	57	46	0	2	51	1.12
50963393--50963418	13	2.0	13	100	0	52	38	0	7	53	1.30
50966560--50966727	47	3.6	45	72	19	150	45	2	3	47	1.35
50966486--50966693	91	2.3	91	92	0	335	46	3	3	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50966507--50966668	44	3.6	43	70	19	125	45	1	3	49	1.30
50966608--50966668	28	2.2	28	85	5	81	45	0	3	50	1.17
50966709--50967469	120	6.4	119	94	2	1304	42	3	5	48	1.40
50966830--50966864	18	2.0	17	88	5	52	45	0	0	54	0.99
50967070--50967104	18	2.0	17	88	5	52	45	0	0	54	0.99
50967310--50967365	17	3.3	18	74	20	50	42	0	0	57	0.99
50967314--50967355	15	2.9	15	82	10	52	47	0	0	52	1.00
50967245--50967467	111	2.0	111	94	0	392	43	3	5	48	1.41
50967620--50967711	45	2.1	44	85	6	123	33	26	5	34	1.79
50967696--50967758	16	3.9	16	85	0	81	23	31	3	41	1.70
50967689--50967753	32	2.0	32	90	0	103	21	30	4	43	1.73
50971277--50971318	20	2.1	20	86	8	59	35	4	19	40	1.72
50977728--50977778	23	2.2	23	96	0	93	37	21	11	29	1.89
50977873--50977931	11	5.7	10	71	28	52	84	8	3	3	0.84
50978366--50978422	20	2.9	20	81	2	62	82	3	10	3	0.91
50979316--50979778	44	10.8	44	68	16	197	29	18	24	26	1.98
50979492--50979651	87	1.8	87	84	5	216	29	16	25	28	1.97
50979300--50979672	131	2.8	131	90	0	593	29	19	24	26	1.98
50979621--50980195	128	4.6	124	87	1	564	33	21	20	24	1.97
50979788--50980139	44	8.3	43	67	10	177	33	22	18	25	1.97
50979699--50980204	128	4.0	128	90	0	762	34	22	19	24	1.96
50984922--50985050	66	2.0	66	93	3	224	24	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50993760--50993873	43	2.7	43	76	1	122	27	28	15	28	1.96
51000869--51000911	21	2.1	21	86	4	61	27	6	0	65	1.18
51001815--51001861	20	2.4	20	86	10	62	40	2	34	23	1.67
51001958--51002053	41	2.4	41	83	1	122	12	25	20	41	1.87
51013792--51013835	21	2.1	21	95	0	79	40	9	11	38	1.73
51013791--51013846	21	2.8	19	82	10	76	39	8	14	37	1.77
51013835--51013882	23	2.2	23	88	7	73	33	4	14	47	1.63
51014307--51014338	10	3.1	11	86	13	50	37	0	0	62	0.95
51014307--51014353	23	2.0	23	84	8	60	38	6	0	55	1.26
51016426--51016468	21	2.0	21	83	16	54	20	4	13	60	1.51
51017597--51017626	16	1.9	16	93	6	53	60	10	16	13	1.59
51018829--51018952	30	4.1	30	93	1	203	25	24	6	43	1.78
51018839--51018946	15	7.2	15	67	12	78	25	22	7	44	1.79
51023521--51023644	30	4.1	30	93	1	203	25	24	6	43	1.78
51023531--51023638	15	7.2	15	67	12	78	25	22	7	44	1.79
51028209--51028302	30	3.1	30	90	1	143	25	24	6	43	1.78
51028219--51028296	15	5.2	15	67	11	61	25	21	7	44	1.79
51029502--51029547	16	2.9	16	81	9	58	36	0	4	58	1.18
51039353--51039391	7	5.7	7	85	14	55	43	0	0	56	0.99
51039537--51039623	22	4.0	21	88	7	122	44	26	0	28	1.54
51039537--51039623	43	2.0	43	93	0	147	44	26	0	28	1.54
51039655--51039776	59	2.1	58	92	1	199	40	10	10	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51042774--51043207	125	3.5	124	89	1	665	29	20	18	31	1.96
51043328--51043383	16	3.6	16	74	13	62	51	32	0	16	1.44
51043344--51043404	15	4.0	15	75	12	61	50	34	0	14	1.43
51043327--51043399	31	2.4	31	93	2	121	53	31	0	15	1.42
51048026--51048070	22	2.0	22	100	0	90	44	0	13	42	1.43
51048238--51048309	28	2.6	28	84	8	85	44	0	4	51	1.20
51048471--51048505	18	2.0	17	88	5	52	45	0	0	54	0.99
51048475--51048547	28	2.7	27	76	8	76	45	0	2	52	1.15
51048667--51048761	45	2.1	45	88	1	138	32	27	5	34	1.79
51048742--51048793	16	3.2	16	94	0	86	34	36	0	28	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228