genome.fa.s23.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  116  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34238360--34238767	203	2.0	204	94	1	712	38	7	3	49	1.49
34242661--34242703	18	2.4	18	85	11	54	51	4	2	41	1.35
34243105--34243379	137	2.0	137	99	0	541	33	16	14	35	1.89
34246508--34246550	19	2.3	18	88	7	68	25	2	0	72	0.97
34246532--34246563	14	2.4	14	90	10	50	28	6	0	65	1.16
34249936--34250010	25	3.0	25	84	5	89	42	16	12	29	1.83
34250668--34250737	35	2.0	35	100	0	140	34	11	28	25	1.91
34251240--34251284	23	2.0	23	95	0	81	22	17	6	53	1.67
34251972--34252075	54	1.9	54	92	0	172	35	17	17	29	1.93
34254183--34254257	25	3.0	25	76	5	71	42	14	12	30	1.82
34257796--34257872	31	2.3	34	84	8	97	54	1	5	38	1.31
34263110--34263135	9	2.9	9	100	0	52	92	0	7	0	0.39
34268514--34268539	10	2.6	10	100	0	52	15	0	7	76	0.99
34270083--34270315	50	4.7	50	80	1	245	27	21	28	22	1.99
34277477--34277717	50	4.8	50	84	3	281	27	21	29	21	1.99
34281018--34281074	26	2.2	26	78	9	64	59	21	7	12	1.56
34281267--34281321	22	2.5	22	84	0	65	21	12	21	43	1.86
34285019--34285048	12	2.5	12	94	0	51	30	40	23	6	1.80
34285212--34285280	30	2.3	30	100	0	138	15	31	34	17	1.92
34285212--34285261	17	3.2	17	67	21	54	16	34	34	16	1.90
34286468--34286501	10	3.3	10	91	4	50	23	2	14	58	1.50
34288213--34288264	25	2.1	25	88	0	77	34	9	9	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34288458--34288490	6	5.7	6	96	3	59	69	12	0	18	1.18
34290087--34290328	121	2.0	121	99	0	475	35	18	13	33	1.90
34290536--34290604	31	2.3	28	76	21	77	39	10	1	49	1.46
34290616--34290720	52	2.0	52	100	0	210	37	20	3	38	1.71
34296411--34296450	9	4.4	9	87	0	53	22	60	2	15	1.47
34299247--34299271	2	12.5	2	100	0	50	52	0	0	48	1.00
34303198--34303254	24	2.3	26	82	8	66	22	19	17	40	1.91
34304652--34304750	43	2.3	43	89	3	153	20	31	28	20	1.97
34307942--34308022	3	26.3	3	73	14	67	64	2	2	30	1.20
34314831--34314933	35	2.9	35	83	0	134	42	33	10	13	1.79
34316253--34316480	33	6.4	33	72	18	125	32	28	17	21	1.96
34316311--34316447	42	3.5	42	71	20	141	32	28	16	22	1.95
34316278--34316484	75	2.8	75	93	0	351	32	28	16	22	1.96
34316459--34316511	27	2.0	27	92	0	88	26	32	22	18	1.97
34323728--34323929	33	5.6	33	73	19	170	32	28	18	21	1.97
34323650--34323933	75	3.8	75	91	0	451	32	27	17	22	1.96
34324292--34324354	30	2.1	30	85	8	83	30	23	4	41	1.75
34328979--34329052	19	3.9	19	76	0	85	31	25	24	18	1.98
34328969--34329052	38	2.2	38	84	0	105	32	26	22	19	1.97
34329407--34329449	20	2.2	20	82	0	50	60	6	2	30	1.35
34329479--34329530	18	2.8	19	77	11	54	61	1	1	34	1.18
34329500--34329534	9	3.9	9	100	0	70	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34329435--34329530	35	2.8	34	73	12	88	55	3	1	40	1.23
34332511--34332597	39	2.3	36	78	9	102	42	8	10	39	1.69
34334331--34334367	10	3.7	10	92	0	65	62	0	13	24	1.31
34334331--34334368	5	7.6	5	87	0	58	60	0	15	23	1.35
34335278--34335315	14	2.9	13	88	11	60	68	2	28	0	1.03
34345034--34345277	122	2.0	122	100	0	488	21	16	26	36	1.94
34348167--34348192	6	4.3	6	100	0	52	53	0	0	46	1.00
34348657--34348692	18	2.0	18	94	0	63	30	0	2	66	1.06
34348662--34348695	9	4.0	8	88	11	50	35	0	0	64	0.94
34350034--34350404	104	3.6	104	94	2	620	19	20	29	30	1.97
34353325--34353363	20	2.0	20	85	10	53	61	0	0	38	0.96
34353511--34353564	15	3.5	15	76	11	56	57	1	0	40	1.09
34357134--34357253	39	3.1	39	89	4	174	32	3	0	64	1.10
34357194--34357264	28	2.6	27	91	8	117	32	2	0	64	1.08
34357250--34357301	10	4.9	11	77	13	56	42	1	0	55	1.10
34357194--34357301	28	3.8	29	86	10	109	37	2	0	60	1.12
34357212--34357301	31	3.0	30	84	10	107	37	2	0	60	1.09
34357564--34357714	43	3.5	42	76	8	119	30	25	18	25	1.98
34357564--34357726	86	1.9	84	81	10	197	32	24	17	25	1.97
34360563--34360609	24	2.0	24	86	0	67	34	4	10	51	1.56
34366576--34366684	45	2.4	45	80	8	123	40	14	21	23	1.90
34371917--34371943	6	4.5	6	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34373628--34373670	13	3.1	14	84	12	54	60	0	0	39	0.97
34379480--34379535	26	2.2	26	87	6	78	35	17	1	44	1.60
34386131--34386267	50	2.7	50	89	1	202	24	16	27	31	1.96
34386131--34386265	51	2.7	51	90	1	200	23	17	28	31	1.97
34391778--34391859	39	2.1	39	100	0	164	30	14	23	31	1.94
34393814--34393944	50	2.6	51	83	1	147	23	15	28	32	1.95
34398953--34398977	12	2.1	12	100	0	50	32	8	16	44	1.76
34403187--34403233	24	1.9	25	91	4	78	46	6	19	27	1.74
34408300--34408347	24	2.0	24	95	0	87	43	20	8	27	1.80
34412751--34412962	40	5.3	41	83	5	274	24	20	27	27	1.99
34412751--34412943	80	2.4	80	95	0	350	24	20	28	26	1.99
34415584--34415634	23	2.2	24	82	3	59	49	9	27	13	1.74
34417477--34417501	12	2.1	12	100	0	50	8	24	36	32	1.84
34417573--34418248	114	6.0	114	85	5	862	25	21	24	28	1.99
34418708--34418753	21	2.1	22	88	4	67	28	0	26	45	1.54
34418864--34418900	12	2.9	12	92	8	56	16	0	51	32	1.45
34418864--34418900	7	5.6	7	87	12	60	16	0	51	32	1.45
34418869--34418916	19	2.4	20	86	6	62	20	0	47	31	1.50
34418864--34418915	26	2.0	26	84	0	68	21	0	46	32	1.52
34418890--34418962	36	2.1	33	82	7	83	24	1	35	38	1.64
34418904--34419209	90	3.2	94	76	16	288	28	1	28	41	1.66
34419014--34419271	90	3.0	86	85	9	328	29	2	26	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34419680--34419909	84	2.7	84	83	5	243	30	16	20	32	1.95
34420950--34420980	15	2.1	15	94	5	55	6	9	6	77	1.12
34421375--34421403	12	2.4	12	100	0	58	48	10	0	41	1.37
34421399--34421713	9	36.2	9	65	21	102	47	18	2	31	1.62
34421399--34421549	25	6.2	25	70	16	104	46	19	1	31	1.62
34421462--34421714	41	6.3	41	69	19	131	47	18	2	32	1.63
34421523--34421714	16	12.1	16	65	19	82	48	17	2	31	1.61
34421523--34421610	37	2.4	37	96	0	158	48	17	1	32	1.54
34421523--34421625	37	2.4	41	77	22	115	49	17	1	31	1.58
34421627--34421709	25	3.3	25	66	24	59	46	19	3	30	1.66
34423952--34424166	43	5.2	43	76	11	171	31	17	27	23	1.97
34424064--34424131	35	1.9	35	96	0	127	33	14	27	23	1.94
34424245--34424289	21	2.1	21	91	0	72	42	24	17	15	1.88
34429246--34429563	175	1.8	175	96	0	591	36	20	16	26	1.93
34430723--34430813	31	3.0	31	86	1	103	35	7	12	45	1.70
34430743--34430813	31	2.3	31	95	0	124	32	9	12	45	1.75
34435754--34435815	10	5.9	10	74	10	52	33	32	3	30	1.74
34435754--34435816	21	3.0	21	88	2	90	33	33	3	30	1.74
34442835--34442867	15	2.3	15	89	5	50	0	18	3	78	0.87
34447681--34447708	12	2.3	12	100	0	56	17	21	0	60	1.36
34456991--34457175	40	4.7	40	82	6	216	24	27	22	24	2.00
34456993--34457175	79	2.3	81	82	7	214	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34465230--34465414	40	4.7	40	81	6	207	24	27	22	25	2.00
34465232--34465414	79	2.3	81	81	7	205	24	26	22	25	2.00
34475533--34475592	29	2.1	29	96	0	111	40	15	23	21	1.91
34482255--34482291	11	3.4	11	84	0	56	27	43	5	24	1.76
34486988--34487012	12	2.1	12	100	0	50	8	44	0	48	1.32
34488473--34488734	131	2.0	131	93	1	445	35	14	21	27	1.93
34492598--34492661	32	2.0	32	100	0	128	31	12	25	31	1.92
34494852--34494905	20	2.7	20	85	0	81	22	29	20	27	1.98
34497186--34497320	3	44.3	3	68	8	58	28	5	7	57	1.49
34497188--34497260	18	4.4	17	77	8	71	30	4	8	57	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228