genome.fa.s9.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  107  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34561581--34561753	46	3.7	46	75	13	183	23	19	27	29	1.98
34561574--34561745	93	1.8	93	93	0	299	23	20	27	28	1.99
34564692--34564760	15	4.6	15	83	0	84	11	17	13	57	1.64
34564683--34564770	30	3.0	30	81	8	99	10	17	15	56	1.66
34567128--34567303	46	3.8	46	75	14	173	24	19	26	29	1.99
34567124--34567295	93	1.8	93	90	2	274	24	20	26	28	1.99
34569829--34569863	16	2.2	16	90	10	54	77	0	0	22	0.78
34571560--34571784	40	5.6	40	82	2	272	22	26	24	25	2.00
34595234--34595292	28	2.1	28	100	0	118	30	13	27	28	1.94
34596072--34596150	31	2.5	31	93	0	131	29	26	16	27	1.97
34596174--34596265	42	2.2	42	90	0	139	35	18	14	31	1.90
34596398--34596533	26	5.3	26	83	3	163	26	22	22	29	1.99
34596398--34596533	52	2.7	50	86	7	195	26	22	22	29	1.99
34596583--34596669	20	4.3	20	92	2	140	31	18	10	40	1.84
34596583--34596679	20	4.9	20	91	5	96	30	19	9	40	1.83
34597008--34597043	17	2.1	17	100	0	72	33	27	27	11	1.91
34597042--34597085	21	2.0	22	87	12	65	25	40	11	22	1.87
34597378--34597480	27	3.9	27	75	12	81	23	19	19	37	1.94
34597511--34597766	27	9.4	27	78	6	160	33	7	19	39	1.81
34597488--34597724	80	2.9	80	76	9	230	31	8	19	40	1.82
34597488--34597739	54	4.6	54	76	9	226	31	8	20	39	1.82
34597689--34597874	27	6.9	27	86	0	219	37	6	23	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34597690--34597885	81	2.4	81	84	0	257	36	7	22	32	1.83
34597584--34597894	54	5.8	54	80	2	212	34	7	21	36	1.82
34597745--34597901	81	1.9	81	86	0	215	37	8	22	31	1.84
34605192--34605267	29	2.7	28	72	13	75	27	17	32	22	1.96
34609672--34609786	29	4.0	29	74	8	110	27	13	29	29	1.94
34610964--34611000	16	2.3	16	90	0	56	13	24	16	45	1.83
34620474--34620646	46	3.8	46	92	0	274	23	32	8	34	1.86
34620650--34620769	47	2.6	47	90	2	161	27	29	9	34	1.88
34636855--34636885	10	3.1	10	95	0	53	25	32	12	29	1.93
34642442--34642706	40	6.7	40	86	4	340	26	27	21	24	1.99
34650507--34650771	40	6.7	40	86	4	340	26	27	20	24	1.99
34650507--34650771	119	2.2	121	84	4	351	26	27	20	24	1.99
34659480--34659539	28	2.1	29	81	9	70	26	25	1	46	1.62
34666498--34666685	49	3.8	49	79	4	216	29	26	17	26	1.97
34666503--34666690	100	1.9	100	91	2	306	29	26	18	25	1.98
34683231--34683748	40	12.9	40	94	0	894	27	19	27	24	1.99
34691013--34691537	40	13.1	40	94	0	899	28	18	27	25	1.98
34691475--34691598	64	1.9	64	85	0	167	24	20	29	25	1.99
34700682--34700819	55	2.5	55	78	2	152	29	25	26	18	1.98
34705330--34705363	14	2.5	13	86	9	50	17	2	11	67	1.34
34719029--34719058	10	2.9	10	95	5	51	16	0	10	73	1.09
34720606--34720644	13	2.9	13	84	3	51	17	2	2	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34735384--34735765	190	2.0	190	97	0	728	29	13	24	32	1.93
34736440--34736555	43	2.7	43	82	2	135	31	26	16	25	1.96
34736396--34736562	43	3.9	42	76	7	133	31	25	14	28	1.95
34737982--34738129	57	2.6	58	78	11	144	29	18	18	32	1.96
34751031--34751099	33	2.1	34	83	2	86	30	26	15	27	1.96
34751579--34751635	27	2.2	26	81	9	62	29	10	14	45	1.78
34755145--34755208	33	1.9	34	90	3	103	25	25	20	29	1.99
34756625--34756810	40	4.7	40	88	5	243	26	27	22	24	2.00
34772287--34772589	80	3.8	79	88	3	376	26	28	21	24	1.99
34772317--34772589	120	2.3	120	86	4	372	26	29	20	23	1.99
34772287--34772536	40	6.3	40	93	0	385	26	29	21	23	1.99
34772521--34772598	40	1.9	41	82	10	97	26	28	21	23	1.99
34780271--34780533	120	2.2	119	82	6	300	26	28	20	23	1.99
34780271--34780480	40	5.3	40	92	1	307	26	29	20	23	1.99
34780274--34780533	80	3.3	80	85	4	260	26	28	21	23	1.99
34780465--34780542	40	1.9	41	82	10	97	26	28	21	23	1.99
34783797--34783991	7	27.9	7	100	0	390	57	0	14	28	1.38
34786004--34786126	61	2.0	61	98	0	237	47	9	20	22	1.79
34792975--34793086	55	2.0	55	94	0	197	24	20	16	38	1.93
34798267--34798373	42	2.5	42	75	3	108	42	14	21	20	1.88
34799499--34799535	18	2.1	18	100	0	74	48	10	5	35	1.61
34805199--34805235	19	1.9	19	88	0	56	59	10	2	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34806112--34806157	22	2.1	22	100	0	92	30	28	4	36	1.76
34809447--34809494	24	2.0	24	84	4	62	37	16	27	18	1.92
34809562--34809644	26	3.3	26	85	6	100	36	22	22	18	1.95
34821095--34821236	47	3.0	47	94	1	250	28	11	14	45	1.81
34822043--34822216	43	4.0	43	83	6	199	24	20	28	26	1.99
34822048--34822256	43	4.9	43	80	11	168	23	20	29	26	1.99
34822743--34822775	16	1.9	18	88	11	52	24	15	12	48	1.78
34824019--34824054	13	2.8	13	86	0	54	22	41	19	16	1.90
34828599--34828708	25	4.4	25	71	8	91	30	20	30	19	1.97
34828773--34828853	25	3.2	26	77	6	78	38	19	20	20	1.94
34828795--34828862	25	2.7	25	79	6	75	39	17	23	19	1.92
34832989--34833040	25	2.1	25	100	0	104	42	15	3	38	1.65
34833045--34833087	20	2.1	21	86	4	61	23	4	0	72	1.04
34833056--34833087	16	1.9	16	93	6	55	25	0	0	75	0.81
34833389--34833424	18	1.9	19	88	5	56	33	0	0	66	0.92
34835677--34835728	20	2.6	20	81	0	68	46	5	11	36	1.64
34846711--34846826	58	2.0	58	93	3	198	44	18	10	26	1.81
34850287--34850492	42	4.9	42	82	4	220	31	13	23	31	1.93
34850284--34850492	84	2.5	85	80	7	246	31	13	23	31	1.93
34850557--34850581	12	2.1	12	100	0	50	36	16	24	24	1.94
34855052--34855294	47	5.1	47	88	3	326	32	11	30	26	1.91
34855271--34855358	46	1.9	46	85	0	122	31	9	32	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34858824--34858977	34	4.5	34	82	1	157	28	12	18	40	1.87
34858828--34858978	68	2.2	69	84	4	191	29	13	18	39	1.89
34859001--34859082	36	2.3	36	95	0	146	34	6	19	40	1.76
34860607--34860701	37	2.6	37	82	0	109	41	16	12	29	1.86
34862178--34862231	26	2.1	26	96	0	99	38	27	7	25	1.83
34866287--34866318	5	6.4	5	92	0	55	75	0	3	21	0.95
34867473--34867555	41	2.0	41	97	0	157	40	14	13	31	1.84
34877948--34877987	21	1.9	21	84	0	53	30	2	22	45	1.66
34878573--34878722	43	3.5	42	81	7	133	28	16	25	30	1.97
34883359--34883540	28	6.5	28	94	0	294	32	28	12	25	1.93
34885952--34885983	13	2.5	13	94	0	55	15	28	31	25	1.96
34887098--34887177	41	2.0	40	80	9	90	45	2	2	50	1.28
34892832--34892942	56	2.0	56	92	0	186	43	14	8	34	1.75
34894236--34894267	15	2.1	15	100	0	64	31	0	37	31	1.58
34897621--34897685	29	2.2	30	83	8	80	30	6	10	52	1.61
34897808--34897876	29	2.3	29	80	5	75	39	10	11	39	1.75
34898636--34898678	21	2.0	21	86	0	59	53	13	0	32	1.41
34899623--34899665	21	2.0	21	90	0	68	16	23	16	44	1.86
34900905--34901125	40	5.5	40	81	4	214	21	28	18	30	1.97
34900905--34901125	80	2.8	80	81	4	248	21	28	18	30	1.97
34900905--34901128	120	1.9	120	85	3	317	21	28	18	31	1.97
34901024--34901125	20	5.1	20	65	9	64	22	29	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34906503--34906559	30	1.9	30	100	0	114	54	14	10	21	1.69
34912210--34912392	79	2.3	81	83	7	223	24	22	28	24	2.00
34912211--34912394	40	4.6	40	83	9	207	23	22	28	24	1.99
34912263--34912417	79	2.0	79	83	7	199	25	21	28	25	1.99
34920191--34920373	79	2.3	81	83	7	223	24	22	28	24	2.00
34920192--34920375	40	4.6	40	83	9	207	23	22	28	24	1.99
34920244--34920408	79	2.1	79	83	6	201	25	21	28	24	1.99
34937437--34937504	24	2.7	25	84	6	75	36	16	7	39	1.76
34939477--34939545	24	2.9	23	77	14	59	44	2	20	31	1.66
34939461--34939545	25	3.5	23	75	13	64	47	4	17	30	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259