genome.fa.s9.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  212  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67188523--67188551	14	2.1	14	100	0	58	51	0	0	48	1.00
67189083--67189125	23	1.9	22	85	4	59	6	16	2	74	1.14
67189083--67189126	22	2.0	22	82	8	54	6	18	2	72	1.17
67191075--67191174	50	2.0	50	100	0	200	24	24	16	36	1.94
67194331--67194391	22	2.7	23	80	10	63	32	1	1	63	1.13
67194658--67194711	15	3.3	15	74	18	54	46	0	0	53	1.00
67194673--67194709	19	1.9	19	88	0	56	51	0	0	48	1.00
67194744--67194780	16	2.3	16	86	13	58	40	0	0	59	0.97
67194799--67194842	22	2.0	22	86	4	63	56	0	0	43	0.99
67194821--67194852	16	1.9	17	93	6	57	43	0	0	56	0.99
67197686--67197808	33	3.8	32	78	9	106	34	11	22	31	1.90
67197712--67197801	33	2.8	33	83	8	112	32	10	24	33	1.88
67203900--67203935	5	7.4	5	93	6	65	41	0	0	58	0.98
67205192--67205248	15	3.9	15	88	2	89	35	0	12	52	1.39
67205620--67205706	21	4.0	23	79	10	92	16	19	25	39	1.92
67208757--67208860	39	2.7	39	86	0	136	23	21	27	27	1.99
67208768--67208908	39	3.6	39	83	1	149	24	21	27	26	1.99
67214670--67214783	39	2.9	39	93	0	183	21	21	28	27	1.99
67214670--67214820	39	3.9	40	86	3	130	21	22	29	26	1.99
67214670--67214827	78	2.0	78	80	4	176	22	21	28	27	1.99
67216943--67216984	21	2.0	21	85	0	57	38	23	0	38	1.55
67216954--67216984	10	2.9	11	90	9	55	35	29	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67222725--67223025	126	2.4	126	84	5	374	26	14	20	37	1.92
67222725--67223066	126	2.7	127	81	6	318	27	15	19	37	1.92
67232822--67232949	64	2.0	64	92	0	211	28	16	17	37	1.91
67233017--67233350	84	4.0	84	92	0	560	36	24	21	16	1.94
67233068--67233301	44	5.5	44	65	23	115	36	24	22	16	1.94
67233112--67233341	40	5.6	40	66	23	118	36	23	22	17	1.95
67235411--67235722	126	2.5	127	86	4	407	27	14	19	38	1.91
67239011--67239138	64	2.0	64	95	0	229	35	14	10	38	1.82
67240852--67240887	6	6.0	6	100	0	72	16	50	0	33	1.46
67241676--67241724	7	6.6	7	80	13	53	51	0	0	48	1.00
67241674--67241723	24	2.1	24	100	0	100	52	0	0	48	1.00
67241683--67241716	17	2.0	17	94	0	59	50	0	0	50	1.00
67247576--67247651	40	1.9	40	89	5	118	28	27	17	26	1.97
67254838--67254875	20	1.9	20	88	0	58	42	2	55	0	1.14
67256020--67256268	73	3.4	72	88	4	342	31	18	16	33	1.93
67256290--67256607	71	4.3	71	73	14	280	34	20	18	26	1.95
67256130--67257149	158	6.5	156	80	11	1001	34	19	17	28	1.95
67256587--67256621	14	2.5	14	95	0	61	65	5	11	17	1.43
67256290--67257140	229	3.7	230	80	9	976	34	20	17	27	1.95
67256520--67256758	85	2.8	84	85	7	281	38	19	16	25	1.92
67256724--67257153	72	5.8	73	82	7	454	33	20	16	30	1.94
67256837--67257135	75	3.8	82	83	10	312	31	20	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67256324--67257152	243	3.5	231	80	9	846	34	20	17	28	1.95
67256919--67257135	75	2.9	74	91	1	335	30	20	17	31	1.95
67257153--67257330	73	2.5	71	80	5	200	32	23	16	26	1.96
67273134--67273209	40	1.9	40	83	5	100	30	26	15	27	1.96
67275890--67275922	11	2.9	12	86	13	52	78	0	21	0	0.75
67278561--67278684	40	3.1	40	76	9	119	37	23	20	18	1.94
67278727--67278830	38	2.7	40	87	3	149	30	20	22	26	1.98
67278883--67279017	7	19.4	7	74	10	53	22	0	30	46	1.57
67278883--67279017	14	9.7	14	69	10	62	22	0	30	46	1.57
67278890--67278996	42	2.5	42	82	8	137	21	0	28	48	1.56
67278902--67278990	35	2.5	35	85	3	108	23	1	26	48	1.58
67278923--67279017	28	3.4	28	82	4	95	21	1	31	46	1.58
67279373--67279422	22	2.3	21	86	10	66	22	2	32	44	1.64
67279879--67280291	114	3.6	114	84	5	471	23	13	24	38	1.90
67280194--67280385	97	2.0	97	83	4	242	18	13	25	43	1.86
67283133--67283168	18	1.9	19	88	5	56	69	0	0	30	0.89
67283424--67283499	22	3.7	21	76	15	68	40	17	6	35	1.75
67283453--67283550	35	2.7	37	87	12	150	35	16	10	37	1.82
67283460--67283550	19	4.9	19	92	8	161	36	15	10	37	1.83
67284741--67284787	10	5.0	9	80	15	51	40	8	0	51	1.33
67285067--67285140	21	3.2	23	69	20	64	40	13	6	39	1.71
67285236--67285266	9	3.4	9	90	0	53	51	19	0	29	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67285269--67285354	13	6.3	13	74	21	70	52	13	0	33	1.41
67285244--67285453	56	3.8	56	93	2	368	50	16	0	33	1.49
67285338--67285477	56	3.0	44	74	23	140	47	17	0	34	1.54
67285383--67285407	13	1.9	13	100	0	50	48	8	4	40	1.51
67285455--67285527	9	8.1	9	71	17	53	41	23	2	32	1.69
67285424--67285510	36	2.5	36	86	3	124	45	19	1	33	1.58
67290590--67290618	14	2.1	14	93	6	51	34	0	10	55	1.34
67291001--67291055	21	2.6	21	85	0	74	30	18	49	1	1.58
67291307--67291372	31	2.1	31	88	0	96	16	12	21	50	1.77
67304781--67304908	24	5.6	24	64	19	60	57	2	10	30	1.45
67304811--67304892	33	2.3	38	83	12	102	52	0	13	34	1.41
67304877--67304918	19	2.3	18	87	4	57	69	2	2	26	1.13
67305152--67305213	22	2.8	23	92	4	94	11	0	54	33	1.36
67305705--67306788	206	5.3	206	96	0	1963	27	23	19	29	1.98
67308266--67308392	45	2.9	45	81	6	127	25	23	22	29	1.99
67308729--67308823	43	2.3	42	90	3	147	31	32	24	11	1.91
67308729--67308844	41	2.8	43	87	5	150	31	32	23	12	1.92
67311822--67311854	9	3.3	10	84	16	50	60	0	27	12	1.32
67313562--67313789	46	5.0	46	85	1	287	40	14	25	19	1.89
67313572--67313784	92	2.3	92	89	0	327	41	15	25	18	1.89
67337839--67337871	11	3.1	11	86	8	50	63	0	27	9	1.24
67339563--67339790	46	5.0	46	85	1	287	40	14	25	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67339573--67339785	92	2.3	92	89	0	327	41	15	25	18	1.89
67353393--67353474	33	2.3	38	83	12	102	52	0	13	34	1.41
67353459--67353500	19	2.3	18	87	4	57	69	2	2	26	1.13
67354880--67354906	5	5.4	5	100	0	54	37	0	0	62	0.95
67356043--67356457	205	2.0	202	97	1	785	43	9	3	44	1.52
67357217--67357246	15	2.0	15	100	0	60	26	20	20	33	1.97
67372991--67373034	18	2.4	18	78	14	54	43	2	2	52	1.26
67376557--67376599	20	2.2	20	100	0	86	9	41	23	25	1.84
67377213--67377244	3	10.7	3	93	0	55	0	31	0	68	0.90
67378640--67378665	11	2.4	11	100	0	52	69	0	0	30	0.89
67379149--67379194	18	2.8	17	78	15	53	30	41	28	0	1.56
67383270--67383367	49	2.0	51	85	4	137	35	14	21	28	1.92
67391144--67391267	62	2.0	62	98	0	239	32	12	14	41	1.83
67393054--67393090	17	2.1	19	85	10	51	62	0	13	24	1.31
67402443--67402475	17	2.0	17	94	5	59	36	15	0	48	1.45
67402883--67402958	25	3.2	25	64	21	72	19	22	15	42	1.89
67402905--67403013	54	2.0	54	94	0	191	22	24	12	39	1.90
67402753--67403034	46	6.0	46	85	7	332	21	23	14	40	1.90
67411786--67411822	18	2.0	19	89	5	58	51	10	5	32	1.60
67417059--67417136	39	2.0	39	100	0	156	35	10	23	30	1.88
67419141--67419221	40	2.0	40	97	0	153	46	9	13	29	1.75
67424755--67424818	24	2.5	25	80	7	67	29	4	4	60	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67428375--67428483	26	4.2	26	91	0	182	34	23	8	33	1.85
67435955--67436011	29	2.0	27	83	12	71	64	1	1	31	1.13
67454488--67454523	12	3.0	12	95	0	63	41	5	25	27	1.77
67457025--67457086	23	2.5	26	90	10	96	4	4	22	67	1.29
67457025--67457087	25	2.6	24	88	11	94	4	4	22	68	1.28
67461460--67461499	20	2.0	20	100	0	80	25	10	40	25	1.86
67489340--67489397	26	2.2	27	79	14	68	55	1	10	32	1.44
67490697--67490759	31	2.0	31	87	0	90	14	1	38	46	1.54
67492681--67492733	25	2.1	25	82	0	61	49	5	26	18	1.70
67498968--67498999	16	2.1	16	88	11	50	21	0	18	59	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259