genome.fa.s9.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  100  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32491153--32491247	27	3.5	27	73	13	88	42	8	16	32	1.79
32494298--32494440	25	5.8	25	90	2	211	28	23	20	27	1.99
32494499--32494555	9	5.9	9	73	15	51	35	21	8	35	1.84
32494487--32494555	20	3.5	20	93	0	120	33	21	10	34	1.87
32494492--32494546	11	5.4	11	70	16	55	30	20	12	36	1.90
32494593--32494640	25	1.9	25	91	0	78	25	14	25	35	1.94
32497200--32497278	26	3.0	26	83	7	88	39	17	24	18	1.92
32497437--32497496	22	2.7	22	82	5	68	30	20	26	23	1.98
32497875--32498348	27	17.6	27	79	7	462	25	18	17	37	1.93
32497874--32498357	54	9.0	54	85	3	607	26	18	17	37	1.93
32500110--32500165	18	3.1	18	84	0	67	46	12	17	23	1.82
32500495--32500709	27	8.0	27	82	4	227	40	19	14	25	1.90
32500495--32500697	81	2.5	80	85	1	253	40	19	15	24	1.90
32500702--32500840	53	2.6	54	83	4	165	23	15	19	42	1.88
32500702--32500840	27	5.2	27	82	5	147	23	15	19	42	1.88
32505408--32505519	43	2.6	43	84	4	138	25	15	25	33	1.95
32505408--32505561	43	3.6	43	76	6	118	27	14	26	30	1.95
32509003--32509076	37	2.0	37	82	15	91	25	8	24	41	1.82
32515294--32515461	88	1.9	88	88	0	255	26	17	19	35	1.94
32520758--32521027	146	1.9	140	81	9	321	27	20	28	24	1.99
32530433--32530555	39	3.2	39	83	0	156	27	27	19	25	1.99
32535658--32535685	14	2.0	14	100	0	56	50	0	7	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32541180--32541367	43	4.4	43	80	6	188	28	17	22	31	1.96
32541188--32541348	85	1.9	84	86	7	227	26	17	24	31	1.97
32548913--32548943	14	2.3	13	94	5	53	29	16	6	48	1.70
32553721--32553871	82	1.8	82	86	0	221	49	7	2	40	1.44
32559015--32559048	16	2.2	16	89	5	52	70	0	26	2	1.01
32563645--32563741	44	2.2	44	82	8	110	42	2	1	54	1.19
32563697--32563721	13	1.9	13	100	0	50	44	0	0	56	0.99
32563704--32563756	26	2.1	24	83	13	63	50	0	1	47	1.12
32564177--32564214	17	2.2	17	90	9	60	50	5	2	42	1.39
32565497--32565540	22	2.0	22	87	12	65	22	15	9	52	1.71
32566674--32566723	7	7.0	7	93	2	82	26	4	14	56	1.56
32570493--32570637	49	2.9	50	81	3	175	29	24	19	26	1.98
32572309--32572456	6	23.8	6	68	19	81	48	15	17	18	1.81
32572309--32572456	19	7.9	18	68	20	81	48	15	17	18	1.81
32572354--32572456	31	3.3	31	84	4	136	49	16	15	18	1.80
32572326--32572393	25	2.7	25	95	0	118	47	14	20	17	1.83
32572311--32572396	25	3.5	25	87	4	86	47	15	19	17	1.82
32572593--32572694	27	3.8	26	88	5	132	36	21	23	18	1.95
32572864--32572917	22	2.5	22	77	17	67	38	20	20	20	1.93
32573302--32573363	27	2.3	27	77	0	70	38	22	17	20	1.93
32573345--32573547	27	7.2	27	78	12	167	26	20	17	35	1.95
32573346--32573514	90	1.9	89	86	3	241	26	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32573597--32573674	27	2.9	27	82	3	95	32	8	20	38	1.84
32573531--32573688	81	2.0	81	80	2	183	31	8	22	36	1.85
32573639--32574035	27	14.7	27	83	1	463	31	8	20	39	1.82
32573667--32574041	54	6.9	54	90	0	561	31	8	21	39	1.82
32573579--32574015	81	5.4	81	81	2	286	31	8	20	38	1.83
32575806--32576290	47	10.2	47	90	2	736	29	30	8	31	1.86
32575806--32576290	96	5.1	96	92	1	780	29	30	8	31	1.86
32575806--32576290	143	3.4	141	90	3	781	29	30	8	31	1.86
32580774--32581080	125	2.5	126	90	2	485	26	18	16	38	1.92
32581523--32581558	16	2.2	16	90	0	54	50	33	2	13	1.57
32581106--32582015	157	5.7	158	89	5	1370	43	19	1	35	1.62
32581866--32582172	140	2.2	142	90	2	485	43	19	1	34	1.61
32581997--32582048	24	2.2	22	87	12	77	61	21	0	17	1.34
32581994--32582067	23	3.2	23	82	3	78	54	24	0	21	1.45
32583201--32583233	15	2.2	15	94	0	57	39	0	0	60	0.97
32584342--32584463	64	1.9	64	94	0	217	34	18	13	32	1.91
32590733--32590791	18	3.3	17	76	9	55	45	18	6	28	1.75
32590723--32590791	36	1.9	36	88	5	104	46	17	7	28	1.75
32590724--32590782	9	6.6	9	80	7	57	45	16	8	28	1.77
32590811--32590851	6	6.5	6	83	10	55	14	0	7	78	0.96
32590809--32590848	20	2.0	20	90	0	62	15	0	10	75	1.05
32590876--32590900	13	1.9	13	100	0	50	12	0	48	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32590877--32590914	18	2.1	18	95	0	67	7	2	47	42	1.46
32592630--32592705	31	2.5	31	100	0	152	44	11	17	26	1.83
32598462--32598529	32	2.1	32	94	0	118	30	16	10	42	1.81
32600950--32600989	16	2.5	16	100	0	80	12	7	5	75	1.18
32603668--32603786	45	2.7	44	88	5	161	25	28	22	23	1.99
32611380--32611558	85	2.1	85	98	0	349	37	8	27	26	1.85
32613771--32614087	47	6.6	47	87	4	454	32	12	29	25	1.93
32613746--32614087	94	3.6	98	88	5	502	32	12	28	26	1.93
32613771--32614087	147	2.2	141	88	3	472	32	12	29	25	1.93
32614061--32614151	46	2.0	46	84	0	119	32	9	31	25	1.89
32613746--32614136	147	2.7	140	83	6	392	32	12	28	26	1.92
32614296--32614477	37	4.9	37	94	0	310	24	19	31	25	1.98
32615746--32616097	40	8.8	40	93	0	587	23	22	29	25	1.99
32617867--32618045	85	2.1	85	98	0	349	37	8	27	26	1.85
32620257--32620573	47	6.6	47	87	4	445	32	12	29	26	1.92
32620232--32620573	94	3.6	98	87	5	493	32	12	28	26	1.92
32620383--32620457	23	3.2	23	66	23	66	29	9	32	29	1.88
32620384--32620461	25	3.2	25	66	23	76	28	8	32	30	1.88
32620257--32620573	147	2.2	141	89	3	490	32	12	29	26	1.92
32620547--32620637	46	2.0	46	84	0	119	32	9	31	25	1.89
32620232--32620622	147	2.7	142	83	7	416	32	12	29	26	1.92
32620782--32620963	37	4.9	37	93	0	301	24	18	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32622918--32622944	13	2.1	13	100	0	54	14	33	37	14	1.88
32627906--32627945	15	2.6	16	84	4	55	15	7	0	77	0.98
32628894--32628920	2	13.5	2	100	0	54	51	48	0	0	1.00
32635782--32635885	52	2.0	52	98	0	199	42	27	7	22	1.80
32635881--32635966	34	2.5	34	94	1	145	50	30	6	12	1.67
32642520--32642546	13	2.1	13	100	0	54	37	0	14	48	1.45
32645378--32645428	25	2.0	26	84	7	68	31	3	15	49	1.63
32648093--32648217	60	2.1	60	100	0	250	39	9	27	24	1.86
32651013--32651278	46	5.7	47	77	10	217	27	16	30	25	1.97
32652376--32652414	21	1.9	20	84	5	51	17	30	28	23	1.97
32656012--32656163	27	5.6	27	93	3	241	30	28	13	26	1.94
32656012--32656163	55	2.8	55	94	0	259	30	28	13	26	1.94
32660954--32661201	79	3.2	77	79	5	230	26	27	20	26	1.99
32660989--32661208	40	5.6	40	83	6	218	26	27	20	25	1.99
32674217--32674368	27	5.6	27	93	3	241	30	28	13	26	1.94
32674217--32674368	55	2.8	55	94	0	259	30	28	13	26	1.94
32677699--32677785	43	2.0	42	91	2	138	29	33	18	18	1.95
32677715--32677778	18	3.2	18	69	26	56	29	34	21	14	1.93
32683994--32684414	47	9.0	47	89	0	626	31	11	29	27	1.91
32684228--32684307	25	3.3	25	66	22	71	31	10	28	30	1.89
32684303--32684378	23	3.2	25	62	24	63	28	13	34	23	1.92
32684577--32684728	37	4.1	37	93	0	241	21	21	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32696370--32696480	27	4.2	26	87	5	132	38	20	23	17	1.93
32700792--32700831	21	1.9	21	84	0	53	30	10	25	35	1.88
32701337--32701432	28	3.5	28	86	1	122	25	11	34	29	1.91
32701362--32701454	28	3.3	28	86	1	78	29	11	32	26	1.92
32707016--32707056	15	2.7	15	80	0	55	56	14	12	17	1.68
32718789--32718828	21	1.9	21	89	0	62	32	10	22	35	1.87
32719341--32719406	28	2.4	28	81	0	78	25	13	31	28	1.94
32719357--32719434	28	2.8	29	90	3	115	24	12	34	28	1.92
32720686--32720719	18	1.9	18	88	5	52	41	11	17	29	1.85
32724881--32725087	27	7.6	27	93	3	207	30	28	14	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259