Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  49  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15403274--15403391
9
12.1
9
67
18
58
29
3
3
63
1.27
15403587--15403676
31
3.0
30
82
8
101
47
12
7
32
1.69
15415184--15415646
230
2.0
230
96
0
845
35
23
12
27
1.92
15428330--15428702
158
2.4
158
83
5
441
28
13
20
38
1.89
15430812--15430874
30
2.1
30
93
0
108
58
12
3
25
1.49
15431688--15431829
75
1.9
76
81
7
173
38
0
33
28
1.57
15439020--15439059
16
2.5
17
74
25
50
62
10
7
20
1.50
15446106--15446130
6
4.2
6
100
0
50
16
16
0
68
1.22
15446107--15446238
62
2.1
62
87
5
187
26
21
8
43
1.80
15447023--15447097
17
4.5
17
71
17
59
56
1
1
41
1.16
15453856--15454006
38
3.9
38
85
1
176
31
26
20
21
1.98
15453856--15454006
76
2.0
78
84
5
200
31
26
20
21
1.98
15461070--15461260
38
4.9
38
92
1
238
30
25
23
20
1.99
15464229--15464297
30
2.4
30
82
4
79
30
18
10
40
1.84
15467007--15467072
13
5.1
13
81
7
89
36
24
7
31
1.83
15469054--15469101
22
2.2
22
96
0
87
14
29
43
12
1.82
15478404--15478514
4
28.8
4
71
23
62
25
2
0
72
0.98
15478391--15478466
22
3.3
22
82
15
75
22
1
0
76
0.86
15478388--15478521
28
5.2
25
73
21
84
25
2
0
71
1.00
15478403--15478469
21
3.0
22
84
16
86
22
0
0
77
0.77
15478390--15478466
7
11.1
7
77
15
54
22
1
0
76
0.86
15478410--15478521
7
16.7
7
83
12
123
25
2
0
71
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15480961--15481000
10
4.0
10
86
0
62
27
10
2
60
1.42
15486827--15486916
45
2.0
44
93
2
153
26
14
23
35
1.93
15488388--15488439
20
2.6
20
96
0
95
19
34
32
13
1.90
15492373--15492447
37
2.0
37
100
0
150
33
13
24
29
1.93
15511976--15512020
23
2.0
23
82
8
56
13
8
0
77
0.98
15514523--15515027
40
12.6
40
94
0
850
24
27
20
27
1.99
15522297--15522716
40
10.6
40
94
2
724
24
27
20
27
1.99
15526134--15526158
7
3.6
7
100
0
50
28
24
0
48
1.52
15526327--15526393
20
3.3
20
72
17
59
22
14
10
52
1.72
15526673--15526724
20
2.6
19
76
11
52
13
25
11
50
1.75
15527346--15527408
20
3.2
20
81
0
72
15
15
11
57
1.66
15557877--15557927
19
2.6
19
81
3
57
47
1
1
49
1.24
15557921--15557975
22
2.5
22
80
8
60
60
0
5
34
1.20
15567525--15567591
30
2.3
27
76
16
71
38
2
2
55
1.31
15573664--15573742
28
2.8
28
86
0
104
34
11
25
29
1.91
15584240--15584284
22
2.2
20
84
8
54
24
0
6
68
1.13
15584198--15584624
110
3.8
113
78
10
367
24
2
15
58
1.50
15584883--15584918
18
1.9
19
88
5
56
27
8
8
55
1.58
15587043--15587187
78
1.9
78
80
11
172
39
15
14
31
1.87
15588881--15588922
5
8.2
5
97
2
75
57
0
2
40
1.12
15589351--15589406
23
2.4
23
77
16
62
50
3
0
46
1.19
15594045--15594112
25
2.6
26
77
11
68
30
7
4
57
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15597476--15597535
26
2.3
27
80
11
72
45
20
20
15
1.86
15599601--15599641
17
2.5
17
80
15
50
2
24
0
73
0.96
15599884--15599918
17
2.0
18
88
5
54
54
0
0
45
0.99
15600393--15600445
26
2.1
25
82
3
61
33
20
18
26
1.96
15607317--15607361
19
2.3
21
75
21
53
68
0
0
31
0.89
15607740--15607802
32
2.0
32
81
12
76
31
17
12
38
1.87
15609233--15609302
31
2.3
30
85
2
95
65
4
4
25
1.29
15614467--15614499
17
1.9
17
88
11
50
36
9
15
39
1.79
15617796--15617829
12
2.8
12
86
0
50
79
5
2
11
1.02
15617796--15617880
11
6.7
13
75
23
67
72
5
8
12
1.25
15617795--15617867
11
5.9
12
76
16
69
72
5
6
15
1.24
15617795--15617881
38
2.3
39
80
11
108
72
6
8
12
1.27
15618948--15619055
6
17.7
6
70
6
74
71
3
18
6
1.23
15618935--15619055
57
2.1
56
82
8
138
70
3
19
7
1.25
15619016--15619053
13
2.8
13
82
17
51
73
0
18
7
1.06
15619012--15619067
21
2.6
21
75
8
51
73
1
19
5
1.12
15618975--15619073
27
3.6
27
71
16
78
69
3
18
9
1.28
15619136--15619241
48
2.2
47
85
9
135
59
1
24
14
1.45
15620986--15621048
33
1.9
33
84
12
85
12
25
6
55
1.60
15621046--15621101
21
2.7
21
72
5
51
8
17
1
71
1.21
15621045--15621101
14
4.1
14
75
16
57
8
17
1
71
1.19
15621063--15621166
18
5.6
18
73
10
84
6
18
3
71
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15621063--15621170
6
17.7
6
70
5
74
6
18
3
71
1.23
15622206--15622267
29
2.2
27
83
13
72
4
16
4
74
1.17
15622249--15622316
11
5.6
11
74
19
55
14
8
2
73
1.19
15622249--15622316
12
5.5
12
76
22
52
14
8
2
73
1.19
15624187--15624369
91
2.0
91
97
0
348
26
23
23
26
2.00
15625754--15625799
20
2.3
20
80
0
56
23
13
32
30
1.93
15626664--15626719
18
3.1
18
77
12
60
32
0
3
64
1.11
15626734--15626787
19
3.0
18
79
12
58
46
0
1
51
1.11
15627475--15627531
5
11.4
5
100
0
114
59
21
0
19
1.38
15647660--15647736
38
2.0
38
82
9
95
62
1
5
31
1.25
15647700--15647750
19
2.8
18
73
11
50
62
0
5
31
1.19
15647701--15647819
26
4.6
25
69
17
75
63
0
5
29
1.23
15647701--15647774
26
2.9
26
82
9
82
63
0
6
29
1.20
15648449--15648498
19
2.5
20
77
6
57
38
2
2
58
1.21
15648441--15648528
29
3.2
27
76
12
81
27
4
4
63
1.33
15648441--15648498
29
2.0
28
87
9
82
32
3
1
62
1.22
15648451--15648498
20
2.4
21
75
10
55
35
2
2
60
1.20
15648450--15648519
29
2.5
28
82
11
83
31
2
4
61
1.30
15649043--15649081
6
6.5
6
87
0
51
0
46
0
53
1.00
15649043--15649081
12
3.2
12
88
0
60
0
46
0
53
1.00
15650517--15650553
19
1.9
19
88
0
56
75
0
24
0
0.80
15656262--15656313
24
2.2
24
82
0
59
34
7
7
50
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15659130--15659154
4
6.2
4
100
0
50
24
0
0
76
0.80
15665520--15665561
22
1.9
22
85
0
57
23
0
2
73
0.94
15669385--15669529
3
48.7
3
74
14
95
26
4
6
62
1.37
15671076--15671116
21
2.0
20
86
13
57
19
2
2
75
1.03
15675918--15675982
22
2.8
23
78
17
71
52
7
1
38
1.40
15675925--15675980
25
2.4
23
82
8
69
55
7
0
37
1.27
15676570--15676594
3
8.3
3
100
0
50
68
0
0
32
0.90
15682457--15682514
25
2.3
25
84
0
89
31
15
17
36
1.91
15684798--15684881
25
3.4
25
88
3
125
30
17
15
35
1.91
15687714--15687796
41
2.0
41
100
0
166
34
21
4
38
1.75
15694326--15694368
22
2.0
22
85
0
59
53
9
16
20
1.70
15694333--15694381
11
4.5
11
76
0
53
51
10
20
18
1.75
15696261--15696392
48
2.8
46
84
10
169
35
7
5
51
1.53
15697372--15697404
7
4.7
7
100
0
66
27
0
15
57
1.38
15698001--15698035
18
1.9
18
94
0
61
25
31
8
34
1.86
15701296--15701371
37
2.1
37
89
0
116
26
31
18
23
1.97
15701490--15701617
49
2.7
47
80
4
157
28
32
7
32
1.85
15701589--15701757
23
7.2
24
65
19
97
32
28
4
34
1.78
15701547--15701687
70
2.0
70
98
0
273
31
29
5
33
1.81
15701616--15701734
47
2.5
47
100
0
238
31
29
6
32
1.83
15701501--15701854
117
3.0
118
94
2
602
29
29
7
32
1.85
15701663--15701807
70
2.0
72
96
4
267
31
28
5
34
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15701733--15701969
47
4.9
47
94
4
420
30
28
8
32
1.87
15704635--15705137
126
4.0
126
88
1
717
28
17
17
36
1.93
15704635--15705137
251
2.0
249
89
1
765
28
17
17
36
1.93
15705713--15705744
16
2.0
16
100
0
64
37
25
0
37
1.56
15705665--15705754
39
2.4
38
87
7
132
43
21
0
35
1.53
15705665--15705754
19
4.8
19
85
10
132
43
21
0
35
1.53
15705852--15705890
17
2.3
17
90
0
60
56
20
0
23
1.42
15706497--15706550
19
2.8
19
75
10
56
40
3
1
53
1.29
15706901--15706975
3
25.0
3
100
0
150
66
0
33
0
0.92
15711801--15712240
43
10.4
43
76
7
382
20
15
23
40
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259