genome.fa.s9.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  137  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44640150--44640318	47	3.6	47	90	0	275	33	8	30	27	1.86
44642280--44642392	38	3.0	38	89	0	163	29	16	29	24	1.97
44642450--44642640	40	4.8	40	92	0	310	21	24	28	25	1.99
44642809--44642886	25	3.1	25	90	3	122	29	12	30	26	1.93
44642871--44642969	28	3.5	28	73	10	103	19	19	34	27	1.95
44646031--44646455	47	9.0	47	92	0	697	32	9	29	27	1.88
44656317--44656362	20	2.5	19	83	13	60	69	4	4	21	1.24
44664047--44664195	48	3.1	48	86	0	208	26	18	26	28	1.98
44664047--44664280	48	5.0	48	71	11	180	25	20	26	27	1.99
44664047--44664280	96	2.5	94	80	8	230	25	20	26	27	1.99
44667415--44667810	81	4.9	81	76	6	297	39	20	8	30	1.83
44667415--44667815	27	14.9	27	79	5	249	39	20	9	31	1.84
44667415--44667837	54	7.9	54	76	5	282	39	20	9	30	1.84
44667627--44667837	109	1.9	108	82	2	262	40	18	9	31	1.83
44669198--44669305	43	2.5	43	92	0	171	30	17	24	27	1.97
44669633--44669666	17	2.0	17	100	0	68	52	11	5	29	1.61
44670933--44671044	41	2.7	41	87	0	161	25	22	28	24	1.99
44674322--44674637	81	3.9	80	77	8	273	42	20	7	29	1.79
44674271--44674701	27	16.0	27	76	10	237	40	19	8	31	1.82
44675825--44676031	41	5.0	41	89	0	315	21	20	29	28	1.98
44685053--44685129	39	2.0	39	100	0	154	27	12	18	41	1.87
44692608--44692649	20	2.1	20	82	8	50	69	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44694144--44694311	47	3.6	47	88	3	243	29	27	17	25	1.98
44701106--44701384	48	5.9	48	78	5	309	26	20	25	26	1.99
44705230--44705335	26	4.2	26	86	3	137	25	20	23	30	1.99
44705230--44705335	52	2.1	49	91	5	167	25	20	23	30	1.99
44705385--44705441	20	2.9	21	87	10	77	31	19	8	40	1.82
44713519--44713590	26	2.8	26	95	2	128	23	23	25	27	2.00
44713640--44713714	20	3.8	20	87	6	102	33	18	10	37	1.86
44713742--44713789	25	1.9	25	86	0	69	27	14	22	35	1.93
44715089--44715120	15	2.0	17	88	11	50	75	0	25	0	0.81
44716185--44716297	54	2.1	53	81	6	129	26	23	30	19	1.98
44716546--44716589	17	2.6	17	78	3	54	54	13	11	20	1.69
44724868--44725045	40	4.5	40	86	3	236	24	23	27	24	2.00
44735471--44735515	22	2.0	22	91	8	74	28	0	20	51	1.48
44736836--44736873	17	2.3	17	83	16	53	5	7	2	84	0.86
44737071--44737175	50	2.1	50	98	0	201	49	15	14	20	1.79
44737290--44737336	13	3.6	13	80	8	51	70	2	2	25	1.10
44741522--44741740	46	4.7	46	84	7	300	22	20	26	30	1.98
44741523--44741738	93	2.3	91	85	6	292	22	20	27	29	1.99
44741965--44742002	19	2.0	20	85	15	53	36	0	23	39	1.55
44755483--44755660	27	6.6	27	83	3	205	26	15	28	29	1.96
44755484--44755639	82	1.9	81	88	3	233	26	15	28	29	1.96
44755480--44755660	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44765819--44765996	27	6.6	27	82	3	178	29	27	15	27	1.96
44765840--44765995	82	1.9	81	86	3	224	29	27	15	27	1.96
44770035--44770207	46	3.7	46	78	11	201	22	20	26	30	1.98
44770032--44770202	93	1.8	93	92	2	290	22	20	27	29	1.98
44770432--44770469	19	2.0	20	85	15	53	36	0	23	39	1.55
44780956--44781001	23	2.0	23	100	0	92	47	8	17	26	1.76
44792522--44792572	26	2.0	26	100	0	102	19	21	7	50	1.72
44815152--44815333	41	4.5	40	74	12	138	23	21	28	26	1.99
44823631--44823790	41	3.9	40	76	11	146	21	23	28	26	1.99
44828942--44828979	18	2.1	18	100	0	76	31	15	10	42	1.81
44829294--44829320	13	2.1	13	100	0	54	37	0	14	48	1.45
44829509--44829571	24	2.6	24	92	0	99	34	3	6	55	1.41
44830135--44830190	7	8.3	7	75	13	55	28	12	1	57	1.46
44830893--44831135	132	1.8	132	84	3	337	34	21	17	26	1.95
44831421--44831458	3	12.7	3	88	0	58	68	2	0	28	1.03
44832996--44833068	26	2.7	27	91	6	121	17	27	0	54	1.43
44845690--44845907	40	5.5	40	87	2	289	25	28	23	22	1.99
44853501--44853718	40	5.5	40	84	2	262	25	27	23	23	2.00
44855601--44855840	132	1.8	132	86	1	347	37	20	17	25	1.94
44856133--44856189	9	6.4	9	80	17	57	70	1	0	28	0.98
44856139--44856190	3	17.0	3	88	4	77	69	0	0	30	0.89
44856695--44856748	26	2.3	22	79	17	63	61	1	0	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44857752--44857822	26	2.7	27	89	6	110	16	25	1	56	1.49
44860054--44860114	30	2.0	30	87	0	86	18	3	19	59	1.52
44860256--44860288	13	2.6	13	90	4	50	78	0	18	3	0.87
44865790--44866542	108	7.3	104	79	10	684	23	24	16	34	1.96
44866282--44866444	47	3.5	47	96	0	290	27	25	12	34	1.92
44866548--44866631	44	1.9	44	85	4	116	25	23	11	39	1.89
44887946--44888102	40	3.9	40	81	1	145	24	26	22	26	2.00
44893839--44893923	41	2.0	42	86	2	118	35	22	11	30	1.90
44902776--44902892	42	2.7	42	84	6	128	35	25	16	23	1.95
44902796--44902919	44	2.9	42	80	10	137	34	27	16	21	1.95
44916239--44916268	12	2.5	12	88	0	51	30	0	50	20	1.49
44930579--44930612	16	2.1	16	88	0	50	11	5	5	76	1.14
44930848--44930919	36	2.0	36	100	0	144	27	19	22	30	1.98
44939577--44939607	5	6.2	5	100	0	62	22	19	19	38	1.93
44950773--44950845	34	2.1	34	87	5	112	30	21	21	26	1.99
44957434--44957459	13	2.0	13	100	0	52	23	30	30	15	1.95
44962548--44962702	57	2.7	58	76	7	154	30	15	19	34	1.93
44969287--44969369	42	2.0	42	85	0	112	30	13	31	25	1.93
44973718--44973829	48	2.3	48	85	1	143	37	12	16	33	1.87
44982278--44982304	5	5.4	5	100	0	54	18	0	0	81	0.69
44992101--44992186	43	2.0	43	95	0	154	29	12	9	48	1.72
44999213--44999388	46	3.8	46	78	12	207	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44999210--44999381	93	1.8	93	94	0	308	20	20	29	28	1.98
45007961--45008136	46	3.8	46	76	12	198	21	20	28	29	1.98
45007958--45008129	93	1.8	93	93	0	299	21	20	29	28	1.98
45014802--45014858	30	1.9	30	82	3	71	17	22	40	19	1.91
45020469--45020644	27	6.5	27	82	3	174	29	27	15	26	1.96
45020490--45020644	82	1.9	81	89	4	240	29	27	16	27	1.97
45021135--45021168	2	17.0	2	87	0	50	47	2	2	47	1.32
45028505--45028682	27	6.6	27	83	3	169	28	28	16	26	1.97
45028526--45028681	82	1.9	81	89	3	242	28	28	16	26	1.97
45037388--45037555	47	3.6	47	79	7	171	23	29	17	29	1.97
45043582--45043858	102	2.7	102	96	0	509	23	29	13	32	1.93
45052334--45052815	151	3.2	146	81	8	499	42	4	10	42	1.60
45057582--45057839	46	5.5	47	76	11	178	29	18	29	23	1.97
45057582--45057839	140	1.8	140	82	4	333	29	18	29	23	1.97
45063424--45063584	46	3.5	46	78	11	159	28	20	28	22	1.98
45066251--45066327	27	2.9	27	82	0	91	23	28	14	33	1.94
45071718--45071751	18	1.9	18	88	5	52	23	32	32	11	1.91
45072100--45072175	40	1.9	40	83	0	98	14	17	32	35	1.90
45077959--45078002	15	2.8	16	89	6	63	13	31	38	15	1.87
45084349--45084386	19	2.0	19	85	10	51	28	0	2	68	1.03
45086480--45086890	46	9.0	46	88	3	517	42	14	23	20	1.88
45086491--45086890	89	4.4	90	87	3	482	42	14	23	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45086973--45087016	13	3.4	13	77	0	52	38	2	22	36	1.67
45087935--45088009	22	3.0	26	79	15	104	56	4	12	28	1.54
45088057--45088131	24	3.2	24	62	24	59	38	16	26	18	1.91
45088004--45088224	47	4.7	47	90	1	329	41	15	23	19	1.90
45088004--45088224	93	2.4	93	90	1	336	41	15	23	19	1.90
45088307--45088402	26	3.7	24	73	13	66	40	4	19	35	1.71
45089160--45089228	36	1.9	36	93	0	120	24	13	36	26	1.92
45093755--45093833	40	2.0	40	87	0	113	16	16	30	36	1.91
45099074--45099246	39	4.5	39	89	3	199	20	24	28	26	1.99
45099103--45099246	39	3.7	39	95	0	261	21	23	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259