genome.fa.s9.2.7.7.80.10.50.1000.231.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  231  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72454962--72454996	12	2.9	12	82	0	52	68	0	0	31	0.90
72457746--72457772	3	9.0	3	100	0	54	33	0	33	33	1.58
72465854--72466133	50	5.6	49	82	5	294	25	17	27	28	1.98
72469250--72469462	65	3.3	65	91	0	309	37	22	10	30	1.87
72469240--72469471	98	2.4	98	81	2	277	34	21	10	33	1.88
72469246--72469462	33	6.6	33	81	2	249	36	21	11	30	1.88
72469467--72469565	29	3.4	29	98	0	189	23	30	12	34	1.91
72478133--72478390	39	6.6	39	90	0	372	29	28	22	19	1.98
72487735--72487820	44	2.0	44	95	0	154	46	17	13	22	1.83
72491935--72491978	13	3.5	13	81	3	54	47	4	0	47	1.22
72495617--72495648	3	10.7	3	100	0	64	0	31	0	68	0.90
72498681--72498714	16	2.1	16	100	0	68	50	20	5	23	1.70
72505305--72506197	298	3.0	298	94	0	1572	28	21	14	36	1.92
72510307--72510405	33	3.0	33	100	0	198	33	27	18	21	1.96
72514037--72514076	19	2.0	19	85	9	53	62	7	0	30	1.23
72514861--72514904	23	2.0	22	86	13	63	20	9	4	65	1.38
72515729--72515777	21	2.2	23	82	7	57	55	4	2	38	1.31
72517707--72517753	21	2.1	21	84	7	58	23	2	6	68	1.24
72517729--72517766	19	1.9	19	89	5	58	28	0	7	63	1.23
72517724--72517769	19	2.4	18	82	10	56	28	0	6	65	1.17
72522546--72522576	16	1.9	16	100	0	62	54	12	12	19	1.70
72534772--72534796	8	3.1	8	100	0	50	88	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72535137--72535178	16	2.5	17	85	14	61	7	0	38	54	1.28
72535319--72535540	108	2.0	110	89	5	342	40	14	14	29	1.86
72537073--72537120	22	2.2	22	100	0	96	37	16	20	25	1.93
72537319--72537440	61	2.0	61	100	0	244	34	22	19	22	1.97
72547842--72547876	17	2.0	18	88	5	54	40	2	0	57	1.14
72548797--72549063	132	2.0	132	85	2	358	36	19	17	27	1.94
72549882--72549933	24	2.2	24	89	6	79	55	0	1	42	1.10
72550124--72550171	19	2.6	18	75	12	53	64	0	0	35	0.94
72551491--72552084	137	4.3	137	90	1	897	27	20	19	32	1.97
72551536--72552085	45	12.2	44	69	12	287	27	20	19	32	1.97
72563617--72563883	132	2.0	132	86	2	376	35	20	17	26	1.94
72564171--72564202	3	10.7	3	93	0	55	68	0	0	31	0.90
72564706--72564755	22	2.3	22	89	6	75	56	0	2	42	1.11
72564705--72564755	20	2.5	21	78	15	63	56	0	1	41	1.10
72569487--72569564	21	3.8	21	79	3	88	43	19	21	15	1.87
72577378--72577404	7	3.9	7	100	0	54	29	11	14	44	1.80
72580691--72580739	23	2.1	23	96	0	89	16	14	14	55	1.70
72583439--72583471	13	2.4	14	85	10	50	51	0	15	33	1.43
72593727--72593767	21	2.0	21	81	18	50	31	19	26	21	1.97
72606834--72607110	137	2.0	138	95	0	502	41	17	10	31	1.82
72610875--72610903	15	1.9	15	100	0	58	41	0	0	58	0.98
72611088--72611179	30	3.1	30	80	3	105	28	19	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72611963--72612011	20	2.5	20	87	12	66	36	2	2	59	1.21
72614619--72614676	21	2.7	21	76	10	55	10	12	0	77	0.99
72614634--72614665	7	4.6	7	100	0	64	0	12	0	87	0.54
72615757--72615795	10	3.8	10	83	6	51	25	7	0	66	1.18
72616513--72616546	18	1.9	18	94	5	61	26	11	5	55	1.58
72619369--72619416	23	2.1	23	84	3	62	50	4	14	31	1.62
72619419--72619467	18	2.6	18	87	6	62	28	2	2	67	1.13
72619855--72619997	67	2.1	67	81	2	171	24	23	17	34	1.96
72623144--72623225	23	3.4	24	79	17	89	43	1	1	53	1.16
72623144--72623245	24	4.2	23	77	16	91	43	0	1	53	1.18
72626454--72626653	52	3.9	52	77	10	173	24	16	28	30	1.96
72626521--72626633	53	2.3	48	82	10	122	28	16	25	29	1.97
72631713--72631760	25	1.9	25	86	0	69	72	8	6	12	1.26
72632247--72632276	6	5.2	6	92	8	53	0	16	0	83	0.65
72632247--72632276	11	2.6	11	94	5	51	0	16	0	83	0.65
72632314--72632361	25	1.9	25	86	0	69	12	6	8	72	1.26
72632314--72632369	25	2.2	25	83	0	67	14	5	8	71	1.29
72632690--72632732	20	2.1	21	86	4	61	46	2	0	51	1.13
72633745--72633802	28	2.1	26	84	15	73	62	0	5	32	1.18
72635589--72635629	20	2.0	20	95	0	73	21	41	26	9	1.84
72641028--72641069	13	3.2	13	89	3	57	78	0	9	11	0.96
72641094--72641124	16	1.9	16	93	0	53	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72643892--72644059	47	3.6	47	93	1	284	23	18	29	28	1.98
72648715--72648765	4	12.8	4	100	0	102	50	25	0	23	1.49
72650956--72651024	33	2.1	33	86	5	95	37	8	21	31	1.84
72664060--72664185	39	3.3	38	85	3	171	23	23	20	32	1.98
72665217--72665249	9	3.7	9	91	0	57	24	12	24	39	1.89
72665215--72665249	18	1.9	18	100	0	70	28	11	22	37	1.89
72665301--72665337	9	4.1	9	89	0	56	48	10	10	29	1.72
72666360--72666385	5	5.2	5	100	0	52	19	19	19	42	1.90
72680911--72680966	17	3.2	17	89	5	76	71	1	7	19	1.18
72680898--72680981	35	2.5	33	76	16	82	71	2	5	20	1.18
72681498--72681541	22	2.0	22	86	0	61	52	0	0	47	1.00
72681567--72681607	15	2.8	15	79	17	50	53	0	0	46	1.00
72681567--72681601	15	2.2	16	90	10	54	60	0	0	40	0.97
72681634--72681690	15	3.5	15	71	17	51	49	1	1	47	1.22
72687806--72687912	33	3.3	32	81	6	117	33	23	11	31	1.90
72696598--72696664	32	2.1	32	97	0	125	34	7	14	43	1.74
72703540--72703612	36	2.0	36	100	0	146	47	5	16	30	1.69
72704481--72704527	25	2.0	23	83	8	58	63	10	0	25	1.26
72704605--72704658	23	2.5	23	82	8	60	61	7	0	31	1.24
72704606--72704761	24	6.3	25	69	10	81	57	3	7	32	1.44
72704831--72704912	14	5.5	15	71	25	68	63	0	8	28	1.23
72704831--72704911	17	4.5	19	72	21	61	64	0	7	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72704831--72704908	23	3.3	24	76	21	67	64	0	7	28	1.21
72704841--72704914	29	2.5	29	85	10	96	62	0	9	28	1.26
72704840--72704923	29	2.9	27	77	15	87	61	0	9	28	1.27
72708701--72708757	22	2.5	24	75	13	66	59	0	3	36	1.14
72711593--72711635	16	2.7	15	75	10	50	58	6	9	25	1.54
72723848--72723913	33	2.0	33	94	2	116	53	33	3	10	1.51
72727451--72727527	20	3.9	20	73	19	63	40	3	7	48	1.51
72727441--72727500	18	3.2	17	75	20	57	38	5	6	50	1.51
72744099--72744159	29	2.0	31	84	12	83	49	13	0	37	1.42
72747984--72748044	20	3.0	20	73	17	54	42	0	1	55	1.09
72766855--72766911	30	1.9	30	92	0	96	38	10	26	24	1.88
72768484--72768627	71	2.0	71	100	0	288	26	9	25	38	1.86
72771578--72771646	34	2.0	34	83	8	86	23	0	4	72	1.02
72772960--72773022	32	2.0	32	96	0	117	38	12	1	47	1.51
72775266--72775392	42	3.0	42	86	6	170	29	26	13	29	1.94
72775452--72775598	31	4.7	31	88	3	224	27	27	19	26	1.99
72775576--72775704	50	2.5	51	88	5	190	25	21	16	36	1.94
72791407--72791490	27	3.1	27	70	23	77	36	0	2	60	1.10
72792235--72792266	16	2.0	16	100	0	64	37	0	0	62	0.95
72793459--72793508	24	2.1	24	85	7	66	0	48	0	52	1.00
72793464--72793498	18	2.0	18	88	5	54	0	48	0	51	1.00
72803482--72803570	18	4.9	18	90	0	142	31	15	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72803482--72803574	36	2.6	36	96	0	168	31	15	24	29	1.95
72804891--72804954	30	2.1	30	100	0	128	26	18	14	40	1.89
72815016--72815072	17	3.6	17	71	22	52	29	47	0	22	1.52
72815011--72815072	29	2.1	30	87	3	90	32	45	0	22	1.53
72815150--72815241	45	2.0	45	97	0	175	34	9	15	40	1.80
72815480--72815651	3	57.7	3	70	16	92	31	2	2	62	1.25
72815490--72815651	19	8.4	19	68	18	95	32	3	3	61	1.27
72815495--72815650	14	10.9	14	68	21	67	32	3	2	61	1.25
72816237--72816470	126	1.9	126	88	1	353	29	17	15	38	1.90
72817792--72817838	19	2.5	19	86	6	60	25	25	10	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259