genome.fa.s9.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  175  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56946485--56946540	9	5.7	10	80	16	64	35	0	3	60	1.14
56946484--56946563	11	7.7	11	75	22	68	33	2	6	57	1.37
56946487--56946563	18	4.4	17	74	14	59	33	2	5	58	1.34
56946484--56946540	20	2.9	20	80	15	66	35	0	5	59	1.20
56952180--56952281	43	2.3	45	84	3	136	33	16	21	28	1.95
56952357--56952452	43	2.2	45	85	7	135	31	15	23	29	1.96
56952153--56952979	177	4.7	177	88	3	1138	31	17	23	27	1.97
56954940--56955002	31	2.0	32	81	9	76	39	6	3	50	1.44
56957896--56957944	20	2.5	20	86	3	64	53	0	24	22	1.47
56965126--56965189	32	2.1	29	82	8	74	35	4	0	59	1.18
56965184--56965233	25	2.0	25	88	3	75	40	0	2	58	1.10
56979265--56979311	23	2.0	23	91	0	76	44	0	0	55	0.99
56987479--56987531	21	2.6	20	77	11	54	24	11	1	62	1.39
56996262--56996301	15	2.7	15	84	3	55	50	2	0	47	1.14
56998247--56998294	24	2.0	24	83	0	60	58	8	2	31	1.39
57000479--57000534	28	2.0	28	96	0	103	23	14	7	55	1.63
57000906--57000948	18	2.4	18	92	0	68	58	2	0	39	1.11
57007516--57007547	16	1.9	17	93	6	57	75	3	3	18	1.08
57008865--57008921	6	9.3	6	81	11	62	22	3	0	73	0.98
57008870--57008907	20	1.9	20	88	0	58	21	5	0	73	1.02
57008867--57008933	25	2.6	25	84	13	84	22	4	0	73	1.01
57008865--57008924	32	1.9	31	83	10	77	23	3	0	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57010510--57010574	34	1.9	34	96	0	121	33	32	12	21	1.90
57021815--57021860	21	2.2	21	100	0	92	30	26	15	28	1.96
57021815--57021860	7	6.6	7	79	0	56	30	26	15	28	1.96
57021815--57021866	21	2.5	21	93	0	77	32	23	13	30	1.93
57021900--57021987	34	2.6	34	81	3	106	18	1	30	50	1.54
57022259--57022312	25	2.2	25	83	6	65	16	27	38	16	1.90
57023546--57023619	20	3.7	19	73	18	69	12	0	37	50	1.40
57023522--57023619	41	2.4	41	84	0	124	14	1	34	50	1.50
57023570--57023635	34	1.9	34	81	6	80	15	0	34	50	1.44
57023608--57023708	42	2.3	43	85	6	116	25	3	31	38	1.74
57023716--57023758	21	2.0	21	86	0	59	25	4	27	41	1.75
57029916--57030083	40	4.2	40	83	4	106	25	27	23	23	2.00
57029939--57030083	40	3.6	40	85	4	193	23	26	24	25	2.00
57031274--57031387	38	3.0	38	98	0	219	32	23	12	31	1.92
57032762--57032802	3	13.7	3	100	0	82	68	0	31	0	0.90
57033899--57033927	11	2.5	12	88	11	51	68	10	6	13	1.37
57033980--57034004	7	3.6	7	100	0	50	88	0	0	12	0.53
57041763--57041792	15	2.0	15	93	0	51	23	0	0	76	0.78
57043658--57043765	26	4.2	26	95	0	180	33	7	23	36	1.83
57045362--57045454	27	3.4	27	83	1	114	16	25	23	34	1.95
57045381--57045473	27	3.5	26	85	7	96	16	24	21	37	1.93
57045362--57045473	54	2.1	54	84	3	145	16	25	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57046590--57046649	10	6.0	10	88	7	95	68	1	8	21	1.25
57047097--57047230	38	3.5	38	71	13	130	29	24	20	25	1.99
57047099--57047266	77	2.2	78	91	3	270	30	24	19	25	1.98
57047108--57047228	40	3.1	40	67	23	112	31	25	18	24	1.97
57047099--57047268	38	4.4	38	72	15	127	31	24	19	25	1.98
57051861--57051909	26	1.9	25	87	4	71	22	4	10	63	1.43
57051899--57051978	26	3.1	28	77	16	84	35	3	6	55	1.43
57051934--57051987	26	2.1	26	82	6	65	35	7	3	53	1.47
57064753--57064783	16	1.9	16	93	0	53	48	6	0	45	1.28
57064751--57064793	16	2.7	16	82	7	52	51	4	0	44	1.22
57064938--57064996	29	2.0	30	86	3	84	27	6	13	52	1.65
57066053--57066077	12	2.1	12	100	0	50	60	0	0	40	0.97
57067591--57067691	50	2.0	50	82	1	123	30	5	11	51	1.62
57067734--57067765	17	1.9	17	93	6	57	34	12	6	46	1.67
57069874--57069935	6	10.5	6	74	8	56	74	0	19	6	1.03
57069874--57069957	18	4.8	16	78	15	62	72	0	20	7	1.07
57069809--57069953	36	4.3	34	72	22	101	67	0	20	11	1.26
57071637--57071730	49	1.9	49	89	2	145	27	5	11	55	1.57
57071779--57071811	17	1.9	17	93	0	57	36	12	3	48	1.56
57071875--57071932	30	1.9	30	89	6	91	37	12	22	27	1.89
57076728--57076756	12	2.3	13	94	5	51	72	0	3	24	1.00
57080775--57080836	30	2.1	30	90	0	97	41	17	17	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57087388--57087439	27	1.9	27	88	0	77	38	11	23	26	1.89
57088569--57088607	18	2.2	18	90	0	60	25	28	28	17	1.98
57090770--57090804	2	17.0	2	94	5	61	48	0	48	2	1.16
57099853--57099900	24	2.0	23	96	4	87	56	8	4	31	1.48
57102910--57102997	38	2.3	38	92	0	140	30	12	22	34	1.91
57110419--57110552	49	2.7	49	88	2	196	26	20	26	27	1.99
57110419--57110544	51	2.5	51	90	2	193	26	19	26	27	1.99
57112747--57112772	11	2.4	11	100	0	52	23	38	30	7	1.83
57114037--57114077	22	1.9	21	85	5	55	26	14	2	56	1.51
57115518--57115588	6	11.5	6	92	4	99	15	0	1	83	0.73
57118885--57118933	24	2.0	24	100	0	98	24	0	20	55	1.44
57119548--57119740	96	2.0	96	98	0	377	36	12	17	32	1.88
57127870--57128191	46	7.0	46	90	0	419	39	15	24	21	1.91
57143381--57143605	40	5.7	40	88	3	285	28	28	19	22	1.98
57148980--57149202	40	5.6	40	89	2	281	22	19	28	28	1.98
57148980--57149237	80	3.2	80	84	2	234	24	19	28	27	1.99
57161225--57161262	13	3.2	13	78	21	55	26	18	0	55	1.43
57164088--57164359	46	6.0	45	87	5	334	22	24	15	37	1.93
57164091--57164361	138	2.0	136	86	4	384	22	24	15	37	1.93
57177260--57177331	33	2.2	33	87	2	99	27	25	22	25	2.00
57197679--57197940	76	3.4	76	80	4	287	34	21	19	24	1.96
57197795--57197935	40	3.6	40	79	12	177	37	23	18	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57197751--57197940	40	5.0	37	71	14	147	36	22	18	22	1.95
57201759--57201941	37	5.0	37	95	1	316	24	21	16	37	1.93
57201905--57202173	46	5.6	46	82	10	322	27	22	14	35	1.93
57201948--57202167	52	4.3	52	83	8	281	26	22	14	35	1.93
57201905--57202173	98	2.7	98	92	0	439	27	22	14	35	1.93
57205293--57205438	49	3.0	49	88	1	220	32	30	13	23	1.93
57206689--57206871	37	5.0	37	93	1	307	24	21	15	38	1.92
57206689--57206918	111	2.0	115	85	9	319	25	21	15	37	1.92
57206835--57207103	46	5.6	46	83	10	331	27	22	14	35	1.93
57206878--57207097	52	4.3	52	83	8	290	27	22	14	35	1.93
57206835--57207103	98	2.7	98	92	0	448	27	22	14	35	1.93
57225289--57225513	40	5.7	40	88	3	285	28	28	19	22	1.98
57233170--57233394	40	5.7	40	88	3	285	28	28	19	22	1.98
57245212--57245249	20	2.0	19	85	10	51	42	13	21	23	1.88
57247063--57247099	15	2.7	14	84	16	51	32	0	0	67	0.91
57247029--57247268	129	1.9	127	87	9	353	33	5	4	56	1.41
57247211--57247270	25	2.5	24	75	8	59	31	6	3	58	1.40
57247385--57247437	27	2.0	27	88	0	79	28	7	3	60	1.41
57247628--57247659	15	2.1	15	94	0	55	31	3	0	65	1.08
57261398--57261451	27	2.0	27	100	0	108	29	14	11	44	1.80
57266008--57266125	18	6.6	18	75	7	60	37	17	9	35	1.82
57266070--57266179	18	6.1	18	81	4	132	35	15	15	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57266672--57266716	17	2.6	18	89	10	76	51	8	8	31	1.64
57267259--57267290	15	2.0	17	88	11	50	62	6	0	31	1.20
57267474--57267525	25	2.1	25	82	7	61	55	9	5	28	1.55
57268303--57268346	19	2.3	19	96	0	79	4	0	29	65	1.12
57268301--57268351	19	2.8	18	85	8	77	3	0	39	56	1.18
57271254--57271286	16	2.1	16	88	11	50	3	15	0	81	0.80
57273318--57273381	34	1.9	34	84	12	89	39	6	3	51	1.43
57278504--57278562	10	6.1	10	78	9	52	64	0	1	33	1.04
57278505--57278556	9	5.6	9	77	13	52	63	0	1	34	1.06
57278506--57278556	18	2.7	19	85	14	70	62	0	1	35	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259